RNA–Protein interactions for RNA: ENST00000505589.1

NEDD9-210, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 571 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-210ENST00000505589 PRKRIP1Q9H875 184 aaPredicted RBP12.55□□□□□ -0.4
NEDD9-210ENST00000505589 COLQQ9Y215 455 aaPredicted RBP12.55□□□□□ -0.4
NEDD9-210ENST00000505589 IL16Q14005 1332 aa12.55□□□□□ -0.4
NEDD9-210ENST00000505589 FRAT2O75474 233 aaPredicted RBP12.54□□□□□ -0.4
NEDD9-210ENST00000505589 GJA5P36382 358 aa12.54□□□□□ -0.4
NEDD9-210ENST00000505589 CAVIN4Q5BKX8 364 aa12.54□□□□□ -0.4
NEDD9-210ENST00000505589 FKBP1CQ5VVH2 108 aa12.54□□□□□ -0.4
NEDD9-210ENST00000505589 DCAF15Q66K64 600 aa12.54□□□□□ -0.4
NEDD9-210ENST00000505589 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.54□□□□□ -0.4
NEDD9-210ENST00000505589 DPF3Q92784 378 aa12.54□□□□□ -0.4
NEDD9-210ENST00000505589 TDRD3Q9H7E2 651 aaKnown RBP12.54□□□□□ -0.4
NEDD9-210ENST00000505589 C9orf78Q9NZ63 289 aaPredicted RBP12.54□□□□□ -0.4
NEDD9-210ENST00000505589 SUGT1Q9Y2Z0 365 aa12.54□□□□□ -0.4
NEDD9-210ENST00000505589 NR2E3Q9Y5X4 410 aa12.54□□□□□ -0.4
NEDD9-210ENST00000505589 PTCH2Q9Y6C5 1203 aa12.54□□□□□ -0.4
NEDD9-210ENST00000505589 KIAA0100Q14667 2235 aaKnown RBP12.54□□□□□ -0.4
NEDD9-210ENST00000505589 CENPFP49454 3210 aa12.54□□□□□ -0.4
NEDD9-210ENST00000505589 LACTBP83111 547 aaPredicted RBP12.53□□□□□ -0.4
NEDD9-210ENST00000505589 FOXO4P98177 505 aa12.53□□□□□ -0.4
NEDD9-210ENST00000505589 LMBR1LQ6UX01 489 aa12.53□□□□□ -0.4
NEDD9-210ENST00000505589 G2E3Q7L622 706 aa12.53□□□□□ -0.4
NEDD9-210ENST00000505589 FAM83AQ86UY5 434 aa12.53□□□□□ -0.4
NEDD9-210ENST00000505589 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.53□□□□□ -0.4
NEDD9-210ENST00000505589 BRI3BPQ8WY22 251 aa12.53□□□□□ -0.4
NEDD9-210ENST00000505589 IRS2Q9Y4H2 1338 aa12.53□□□□□ -0.4
NEDD9-210ENST00000505589 RBBP6Q7Z6E9 1792 aaKnown RBP12.52□□□□□ -0.41
NEDD9-210ENST00000505589 SPDYE5A6NIY4 337 aa12.52□□□□□ -0.41
NEDD9-210ENST00000505589 TCP10L2B9ZVM9 353 aa12.52□□□□□ -0.41
NEDD9-210ENST00000505589 CRKP46108 304 aa12.52□□□□□ -0.41
NEDD9-210ENST00000505589 UBXN2AP68543 259 aa12.52□□□□□ -0.41
NEDD9-210ENST00000505589 PPATQ06203 517 aa12.52□□□□□ -0.41
NEDD9-210ENST00000505589 VGLL4Q14135 290 aa12.52□□□□□ -0.41
NEDD9-210ENST00000505589 WWC1Q8IX03 1113 aa12.52□□□□□ -0.41
NEDD9-210ENST00000505589 TEKT1Q969V4 418 aa12.52□□□□□ -0.41
NEDD9-210ENST00000505589 OTUD5Q96G74 571 aa12.52□□□□□ -0.41
NEDD9-210ENST00000505589 TRIM47Q96LD4 638 aa12.52□□□□□ -0.41
NEDD9-210ENST00000505589 MAST3O60307 1309 aa12.52□□□□□ -0.41
NEDD9-210ENST00000505589 MROH5Q6ZUA9 1318 aa12.52□□□□□ -0.41
NEDD9-210ENST00000505589 SNAP23O00161 211 aa12.51□□□□□ -0.41
NEDD9-210ENST00000505589 GRM8O00222 908 aa12.51□□□□□ -0.41
NEDD9-210ENST00000505589 PPIL2Q13356 520 aa12.51□□□□□ -0.41
NEDD9-210ENST00000505589 RAET1EQ8TD07 263 aa12.51□□□□□ -0.41
NEDD9-210ENST00000505589 TSR2Q969E8 191 aaKnown RBP12.51□□□□□ -0.41
NEDD9-210ENST00000505589 FAM84BQ96KN1 310 aaPredicted RBP12.51□□□□□ -0.41
NEDD9-210ENST00000505589 TEPSINQ96N21 525 aa12.51□□□□□ -0.41
NEDD9-210ENST00000505589 PCDHAC2Q9Y5I4 1007 aa12.51□□□□□ -0.41
NEDD9-210ENST00000505589 SSC5DA1L4H1 1573 aa12.51□□□□□ -0.41
NEDD9-210ENST00000505589 ECM29Q5VYK3 1845 aa12.51□□□□□ -0.41
NEDD9-210ENST00000505589 BRCA2P51587 3418 aa12.5□□□□□ -0.41
NEDD9-210ENST00000505589 ALDH1L1O75891 902 aa12.5□□□□□ -0.41
NEDD9-210ENST00000505589 BEND3Q5T5X7 828 aa12.5□□□□□ -0.41
NEDD9-210ENST00000505589 FAM43AQ8N2R8 423 aa12.5□□□□□ -0.41
NEDD9-210ENST00000505589 TMEM39BQ9GZU3 492 aa12.5□□□□□ -0.41
NEDD9-210ENST00000505589 SRRDQ9UH36 339 aa12.5□□□□□ -0.41
NEDD9-210ENST00000505589 LAMB1P07942 1786 aa12.49□□□□□ -0.41
NEDD9-210ENST00000505589 A0A1W2PPC1 479 aa12.49□□□□□ -0.41
NEDD9-210ENST00000505589 BTBD19C9JJ37 291 aa12.49□□□□□ -0.41
NEDD9-210ENST00000505589 H0YGN5 161 aa12.49□□□□□ -0.41
NEDD9-210ENST00000505589 VAMP4O75379 141 aa12.49□□□□□ -0.41
NEDD9-210ENST00000505589 FMNL1O95466 1100 aaPredicted RBP12.49□□□□□ -0.41
NEDD9-210ENST00000505589 GJB1P08034 283 aa12.49□□□□□ -0.41
NEDD9-210ENST00000505589 HOXD11P31277 338 aaPredicted RBP12.49□□□□□ -0.41
NEDD9-210ENST00000505589 C17orf99Q6UX52 265 aa12.49□□□□□ -0.41
NEDD9-210ENST00000505589 ANKRD23Q86SG2 305 aa12.49□□□□□ -0.41
NEDD9-210ENST00000505589 WDR63Q8IWG1 891 aa12.49□□□□□ -0.41
NEDD9-210ENST00000505589 ZDHHC15Q96MV8 337 aa12.49□□□□□ -0.41
NEDD9-210ENST00000505589 WRNIP1Q96S55 665 aa12.49□□□□□ -0.41
NEDD9-210ENST00000505589 ZNF341Q9BYN7 854 aa12.49□□□□□ -0.41
NEDD9-210ENST00000505589 BIN2Q9UBW5 565 aaPredicted RBP12.49□□□□□ -0.41
NEDD9-210ENST00000505589 JAG2Q9Y219 1238 aa12.49□□□□□ -0.41
NEDD9-210ENST00000505589 IRF6O14896 467 aa12.48□□□□□ -0.41
NEDD9-210ENST00000505589 GRK4P32298 578 aa12.48□□□□□ -0.41
NEDD9-210ENST00000505589 PSMC4P43686 418 aa12.48□□□□□ -0.41
NEDD9-210ENST00000505589 GYG1P46976 350 aa12.48□□□□□ -0.41
NEDD9-210ENST00000505589 GJA8P48165 433 aa12.48□□□□□ -0.41
NEDD9-210ENST00000505589 HHIPL2Q6UWX4 724 aa12.48□□□□□ -0.41
NEDD9-210ENST00000505589 FBXO33Q7Z6M2 555 aa12.48□□□□□ -0.41
NEDD9-210ENST00000505589 SH3TC2Q8TF17 1288 aa12.48□□□□□ -0.41
NEDD9-210ENST00000505589 CACNA1FO60840 1977 aa12.48□□□□□ -0.41
NEDD9-210ENST00000505589 ZNF646O15015 1829 aaPredicted RBP12.48□□□□□ -0.41
NEDD9-210ENST00000505589 SPEF2Q9C093 1822 aa12.48□□□□□ -0.41
NEDD9-210ENST00000505589 CHRDL2Q6WN34 429 aa12.47□□□□□ -0.41
NEDD9-210ENST00000505589 ZNF594Q96JF6 807 aaPredicted RBP12.47□□□□□ -0.41
NEDD9-210ENST00000505589 SRCIN1Q9C0H9 1055 aa12.47□□□□□ -0.41
NEDD9-210ENST00000505589 HTTP42858 3142 aa12.46□□□□□ -0.41
NEDD9-210ENST00000505589 CXCL11O14625 94 aa12.46□□□□□ -0.41
NEDD9-210ENST00000505589 MYCP01106 439 aaPredicted RBP12.46□□□□□ -0.41
NEDD9-210ENST00000505589 FCGRTP55899 365 aa12.46□□□□□ -0.41
NEDD9-210ENST00000505589 FASTKD5Q7L8L6 764 aaKnown RBP12.46□□□□□ -0.41
NEDD9-210ENST00000505589 SLAIN1Q8ND83 568 aa12.46□□□□□ -0.41
NEDD9-210ENST00000505589 WDR66Q8TBY9 1149 aa12.46□□□□□ -0.41
NEDD9-210ENST00000505589 FAM151AQ8WW52 585 aa12.46□□□□□ -0.41
NEDD9-210ENST00000505589 CNKSR2Q8WXI2 1034 aa12.46□□□□□ -0.41
NEDD9-210ENST00000505589 ZKSCAN4Q969J2 545 aaPredicted RBP12.46□□□□□ -0.41
NEDD9-210ENST00000505589 PARK7Q99497 189 aaKnown RBP12.46□□□□□ -0.41
NEDD9-210ENST00000505589 RNF208Q9H0X6 261 aa12.46□□□□□ -0.41
NEDD9-210ENST00000505589 RIPOR2Q9Y4F9 1068 aa12.46□□□□□ -0.41
NEDD9-210ENST00000505589 SNCAIPQ9Y6H5 919 aa12.46□□□□□ -0.41
NEDD9-210ENST00000505589 PDHXO00330 501 aa12.45□□□□□ -0.42
NEDD9-210ENST00000505589 PDE8BO95263 885 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms