RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 CLSTN2Q9H4D0 955 aa14.04□□□□□ -0.16
NUP54-202ENST00000502850 NAP1L2Q9ULW6 460 aaPredicted RBP14.04□□□□□ -0.16
NUP54-202ENST00000502850 NHSQ6T4R5 1651 aa14.04□□□□□ -0.16
NUP54-202ENST00000502850 LOC102724428A0A0B4J2F2 783 aa14.03□□□□□ -0.16
NUP54-202ENST00000502850 CDKL5O76039 1030 aa14.03□□□□□ -0.16
NUP54-202ENST00000502850 IGHMBP2P38935 993 aaKnown RBP14.03□□□□□ -0.16
NUP54-202ENST00000502850 CRKLP46109 303 aaKnown RBP14.03□□□□□ -0.16
NUP54-202ENST00000502850 SIK1P57059 783 aa14.03□□□□□ -0.16
NUP54-202ENST00000502850 MAP3K12Q12852 859 aa14.03□□□□□ -0.16
NUP54-202ENST00000502850 ALX1Q15699 326 aa14.03□□□□□ -0.16
NUP54-202ENST00000502850 TXNRD1Q16881 649 aa14.03□□□□□ -0.16
NUP54-202ENST00000502850 SLFNL1Q499Z3 407 aa14.03□□□□□ -0.16
NUP54-202ENST00000502850 INTS5Q6P9B9 1019 aaKnown RBP14.03□□□□□ -0.16
NUP54-202ENST00000502850 NAP1L5Q96NT1 182 aaPredicted RBP14.03□□□□□ -0.16
NUP54-202ENST00000502850 C4AP0C0L4 1744 aa14.03□□□□□ -0.16
NUP54-202ENST00000502850 C4BP0C0L5 1744 aa14.03□□□□□ -0.16
NUP54-202ENST00000502850 GOLGA8BA8MQT2 603 aa14.02□□□□□ -0.16
NUP54-202ENST00000502850 FOXP2O15409 715 aa14.02□□□□□ -0.16
NUP54-202ENST00000502850 KDM4AO75164 1064 aa14.02□□□□□ -0.16
NUP54-202ENST00000502850 CTDNEP1O95476 244 aa14.02□□□□□ -0.16
NUP54-202ENST00000502850 PDE6AP16499 860 aa14.02□□□□□ -0.16
NUP54-202ENST00000502850 GNAT2P19087 354 aa14.02□□□□□ -0.16
NUP54-202ENST00000502850 TTLL5Q6EMB2 1281 aa14.02□□□□□ -0.16
NUP54-202ENST00000502850 CPLX2Q6PUV4 134 aaKnown RBP14.02□□□□□ -0.16
NUP54-202ENST00000502850 SYNE4Q8N205 404 aa14.02□□□□□ -0.16
NUP54-202ENST00000502850 CDC5LQ99459 802 aaKnown RBP14.02□□□□□ -0.16
NUP54-202ENST00000502850 RCOR1Q9UKL0 485 aa14.02□□□□□ -0.16
NUP54-202ENST00000502850 KLF18A0A0U1RQI7 1052 aa14.01□□□□□ -0.17
NUP54-202ENST00000502850 GOLGA6L6A8MZA4 724 aa14.01□□□□□ -0.17
NUP54-202ENST00000502850 CPLX1O14810 134 aa14.01□□□□□ -0.17
NUP54-202ENST00000502850 IDH1O75874 414 aaKnown RBP14.01□□□□□ -0.17
NUP54-202ENST00000502850 CAMTA2O94983 1202 aa14.01□□□□□ -0.17
NUP54-202ENST00000502850 LIG1P18858 919 aa14.01□□□□□ -0.17
NUP54-202ENST00000502850 TERF1P54274 439 aa14.01□□□□□ -0.17
NUP54-202ENST00000502850 CCT2P78371 535 aaKnown RBP14.01□□□□□ -0.17
NUP54-202ENST00000502850 FAM173BQ6P4H8 233 aa14.01□□□□□ -0.17
NUP54-202ENST00000502850 BRAPQ7Z569 592 aa14.01□□□□□ -0.17
NUP54-202ENST00000502850 AIDAQ96BJ3 306 aa14.01□□□□□ -0.17
NUP54-202ENST00000502850 TMEM87BQ96K49 555 aa14.01□□□□□ -0.17
NUP54-202ENST00000502850 DACT1Q9NYF0 836 aa14.01□□□□□ -0.17
NUP54-202ENST00000502850 TFIP11Q9UBB9 837 aaKnown RBP14.01□□□□□ -0.17
NUP54-202ENST00000502850 SCN7AQ01118 1682 aa14.01□□□□□ -0.17
NUP54-202ENST00000502850 BTAF1O14981 1849 aa14.01□□□□□ -0.17
NUP54-202ENST00000502850 MYO5AQ9Y4I1 1855 aaKnown RBP14.01□□□□□ -0.17
NUP54-202ENST00000502850 A0A1B0GUL6 1792 aa14.01□□□□□ -0.17
NUP54-202ENST00000502850 OFD1O75665 1012 aa14.01□□□□□ -0.17
NUP54-202ENST00000502850 PHKA1P46020 1223 aa14.01□□□□□ -0.17
NUP54-202ENST00000502850 HAND2P61296 217 aa14.01□□□□□ -0.17
NUP54-202ENST00000502850 TYRO3Q06418 890 aa14.01□□□□□ -0.17
NUP54-202ENST00000502850 SUSD4Q5VX71 490 aa14.01□□□□□ -0.17
NUP54-202ENST00000502850 SASS6Q6UVJ0 657 aa14.01□□□□□ -0.17
NUP54-202ENST00000502850 CLEC4GQ6UXB4 293 aa14.01□□□□□ -0.17
NUP54-202ENST00000502850 CCDC73Q6ZRK6 1079 aa14.01□□□□□ -0.17
NUP54-202ENST00000502850 SPATA5Q8NB90 893 aa14.01□□□□□ -0.17
NUP54-202ENST00000502850 CNNM2Q9H8M5 875 aa14.01□□□□□ -0.17
NUP54-202ENST00000502850 ZNF532Q9HCE3 1301 aa14.01□□□□□ -0.17
NUP54-202ENST00000502850 ANO8Q9HCE9 1232 aaPredicted RBP14.01□□□□□ -0.17
NUP54-202ENST00000502850 PIH1D3Q9NQM4 214 aaKnown RBP14.01□□□□□ -0.17
NUP54-202ENST00000502850 USP25Q9UHP3 1055 aa14.01□□□□□ -0.17
NUP54-202ENST00000502850 ANGEL1Q9UNK9 670 aaKnown RBP14.01□□□□□ -0.17
NUP54-202ENST00000502850 ADCY5O95622 1261 aa14□□□□□ -0.17
NUP54-202ENST00000502850 KIAA2012Q0VF49 1180 aa14□□□□□ -0.17
NUP54-202ENST00000502850 TPRNQ4KMQ1 711 aa14□□□□□ -0.17
NUP54-202ENST00000502850 PI16Q6UXB8 463 aa14□□□□□ -0.17
NUP54-202ENST00000502850 C8orf76Q96K31 380 aa14□□□□□ -0.17
NUP54-202ENST00000502850 SPON1Q9HCB6 807 aa14□□□□□ -0.17
NUP54-202ENST00000502850 MYH14Q7Z406 1995 aaKnown RBP13.99□□□□□ -0.17
NUP54-202ENST00000502850 TCRBV5S4A2TA0A5A2 114 aa13.99□□□□□ -0.17
NUP54-202ENST00000502850 NTSR2O95665 410 aa13.99□□□□□ -0.17
NUP54-202ENST00000502850 APPP05067 770 aa13.99□□□□□ -0.17
NUP54-202ENST00000502850 TPM2P07951 284 aa13.99□□□□□ -0.17
NUP54-202ENST00000502850 MTA3Q9BTC8 594 aa13.99□□□□□ -0.17
NUP54-202ENST00000502850 NACAP1Q9BZK3 213 aa13.99□□□□□ -0.17
NUP54-202ENST00000502850 NCOA5Q9HCD5 579 aaKnown RBP13.99□□□□□ -0.17
NUP54-202ENST00000502850 PNPLA7Q6ZV29 1317 aa13.98□□□□□ -0.17
NUP54-202ENST00000502850 A0A0G2JLW4 131 aa13.98□□□□□ -0.17
NUP54-202ENST00000502850 DTNBO60941 627 aa13.98□□□□□ -0.17
NUP54-202ENST00000502850 CHST3Q7LGC8 479 aa13.98□□□□□ -0.17
NUP54-202ENST00000502850 KCNG4Q8TDN1 519 aa13.98□□□□□ -0.17
NUP54-202ENST00000502850 PGBD1Q96JS3 809 aa13.98□□□□□ -0.17
NUP54-202ENST00000502850 STK32BQ9NY57 414 aa13.98□□□□□ -0.17
NUP54-202ENST00000502850 ORC3Q9UBD5 711 aaPredicted RBP13.98□□□□□ -0.17
NUP54-202ENST00000502850 NIP7Q9Y221 180 aaKnown RBP eCLIP13.98□□□□□ -0.17
NUP54-202ENST00000502850 CASZ1Q86V15 1759 aa13.98□□□□□ -0.17
NUP54-202ENST00000502850 PATL2C9JE40 543 aaKnown RBP13.97□□□□□ -0.17
NUP54-202ENST00000502850 SH2B2O14492 632 aaPredicted RBP13.97□□□□□ -0.17
NUP54-202ENST00000502850 KINO60870 393 aaKnown RBP13.97□□□□□ -0.17
NUP54-202ENST00000502850 YEATS4O95619 227 aa13.97□□□□□ -0.17
NUP54-202ENST00000502850 ADD1P35611 737 aaKnown RBP13.97□□□□□ -0.17
NUP54-202ENST00000502850 ANTXR2P58335 489 aa13.97□□□□□ -0.17
NUP54-202ENST00000502850 STRBPQ96SI9 672 aaKnown RBP13.97□□□□□ -0.17
NUP54-202ENST00000502850 KRT23Q9C075 422 aa13.97□□□□□ -0.17
NUP54-202ENST00000502850 NAPBQ9H115 298 aa13.97□□□□□ -0.17
NUP54-202ENST00000502850 GNL3LQ9NVN8 582 aaKnown RBP13.97□□□□□ -0.17
NUP54-202ENST00000502850 RTEL1Q9NZ71 1219 aa13.97□□□□□ -0.17
NUP54-202ENST00000502850 MRVI1Q9Y6F6 885 aa13.97□□□□□ -0.17
NUP54-202ENST00000502850 A0A1W2PQ27 194 aa13.97□□□□□ -0.17
NUP54-202ENST00000502850 A0A1W2PQ64 194 aa13.97□□□□□ -0.17
NUP54-202ENST00000502850 A0A1W2PQD8 194 aa13.97□□□□□ -0.17
NUP54-202ENST00000502850 METAP2P50579 478 aaKnown RBP eCLIP13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms