RNA–Protein interactions for RNA: ENST00000496653.4

LIMS1-213, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 4

Gene LIMS1, Length 626 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-213ENST00000496653 TNFAIP1Q13829 316 aa17.9■□□□□ 0.46
LIMS1-213ENST00000496653 CFAP100Q494V2 611 aa17.9■□□□□ 0.46
LIMS1-213ENST00000496653 TMED8Q6PL24 325 aaPredicted RBP17.9■□□□□ 0.46
LIMS1-213ENST00000496653 DZIP1Q86YF9 867 aaKnown RBP17.9■□□□□ 0.46
LIMS1-213ENST00000496653 EGFRP00533 1210 aa17.89■□□□□ 0.45
LIMS1-213ENST00000496653 CRKP46108 304 aa17.89■□□□□ 0.45
LIMS1-213ENST00000496653 HHIPL2Q6UWX4 724 aa17.89■□□□□ 0.45
LIMS1-213ENST00000496653 CCDC8Q9H0W5 538 aaPredicted RBP17.89■□□□□ 0.45
LIMS1-213ENST00000496653 TMOD2Q9NZR1 351 aa17.89■□□□□ 0.45
LIMS1-213ENST00000496653 HMG20BQ9P0W2 317 aa17.89■□□□□ 0.45
LIMS1-213ENST00000496653 ABCF2Q9UG63 623 aa17.89■□□□□ 0.45
LIMS1-213ENST00000496653 PPP2R3BQ9Y5P8 575 aa17.89■□□□□ 0.45
LIMS1-213ENST00000496653 PASKQ96RG2 1323 aa17.89■□□□□ 0.45
LIMS1-213ENST00000496653 ITGBL1O95965 494 aaPredicted RBP17.88■□□□□ 0.45
LIMS1-213ENST00000496653 GSTO1P78417 241 aa17.88■□□□□ 0.45
LIMS1-213ENST00000496653 ANGEL2Q5VTE6 544 aaKnown RBP17.88■□□□□ 0.45
LIMS1-213ENST00000496653 ERICH6Q7L0X2 663 aa17.88■□□□□ 0.45
LIMS1-213ENST00000496653 EXOC6Q8TAG9 804 aa17.88■□□□□ 0.45
LIMS1-213ENST00000496653 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.88■□□□□ 0.45
LIMS1-213ENST00000496653 ZBED3Q96IU2 234 aaPredicted RBP17.88■□□□□ 0.45
LIMS1-213ENST00000496653 ZDHHC15Q96MV8 337 aa17.88■□□□□ 0.45
LIMS1-213ENST00000496653 ZNF646O15015 1829 aaPredicted RBP17.88■□□□□ 0.45
LIMS1-213ENST00000496653 PRDX5P30044 214 aa17.87■□□□□ 0.45
LIMS1-213ENST00000496653 MCAMP43121 646 aa17.87■□□□□ 0.45
LIMS1-213ENST00000496653 CREBZFQ9NS37 354 aa17.87■□□□□ 0.45
LIMS1-213ENST00000496653 TLR7Q9NYK1 1049 aaKnown RBP17.87■□□□□ 0.45
LIMS1-213ENST00000496653 TTF1Q15361 905 aaPredicted RBP17.86■□□□□ 0.45
LIMS1-213ENST00000496653 NBPF9Q3BBW0 867 aa17.86■□□□□ 0.45
LIMS1-213ENST00000496653 GLIS2Q9BZE0 524 aaPredicted RBP17.86■□□□□ 0.45
LIMS1-213ENST00000496653 LRP2BPQ9P2M1 347 aa17.86■□□□□ 0.45
LIMS1-213ENST00000496653 TMEM88BA6NKF7 163 aa17.85■□□□□ 0.45
LIMS1-213ENST00000496653 LDHCP07864 332 aa17.85■□□□□ 0.45
LIMS1-213ENST00000496653 NF2P35240 595 aa17.85■□□□□ 0.45
LIMS1-213ENST00000496653 TNNI2P48788 182 aa17.85■□□□□ 0.45
LIMS1-213ENST00000496653 MAP4K4O95819 1239 aaPredicted RBP17.84■□□□□ 0.45
LIMS1-213ENST00000496653 SPDYE2Q495Y8 402 aa17.84■□□□□ 0.45
LIMS1-213ENST00000496653 USP48Q86UV5 1035 aa17.84■□□□□ 0.45
LIMS1-213ENST00000496653 CERS3Q8IU89 383 aa17.84■□□□□ 0.45
LIMS1-213ENST00000496653 RAI14Q9P0K7 980 aa17.84■□□□□ 0.45
LIMS1-213ENST00000496653 NEFLP07196 543 aa17.83■□□□□ 0.44
LIMS1-213ENST00000496653 ATP5JP18859 108 aa17.83■□□□□ 0.44
LIMS1-213ENST00000496653 FKBP1CQ5VVH2 108 aa17.83■□□□□ 0.44
LIMS1-213ENST00000496653 FAM163AQ96GL9 167 aaPredicted RBP17.83■□□□□ 0.44
LIMS1-213ENST00000496653 PRMT6Q96LA8 375 aaPredicted RBP17.83■□□□□ 0.44
LIMS1-213ENST00000496653 NOL10Q9BSC4 688 aaKnown RBP17.83■□□□□ 0.44
LIMS1-213ENST00000496653 GAKO14976 1311 aa17.82■□□□□ 0.44
LIMS1-213ENST00000496653 ADM5C9JUS6 153 aa17.82■□□□□ 0.44
LIMS1-213ENST00000496653 ERC2O15083 957 aa17.82■□□□□ 0.44
LIMS1-213ENST00000496653 CELF2O95319 508 aaKnown RBP17.82■□□□□ 0.44
LIMS1-213ENST00000496653 ZAP70P43403 619 aa17.82■□□□□ 0.44
LIMS1-213ENST00000496653 FKBP1BP68106 108 aa17.82■□□□□ 0.44
LIMS1-213ENST00000496653 MAP3K12Q12852 859 aa17.82■□□□□ 0.44
LIMS1-213ENST00000496653 GRIK5Q16478 980 aa17.82■□□□□ 0.44
LIMS1-213ENST00000496653 PI16Q6UXB8 463 aa17.82■□□□□ 0.44
LIMS1-213ENST00000496653 VEZTQ9HBM0 779 aa17.82■□□□□ 0.44
LIMS1-213ENST00000496653 ECHDC1Q9NTX5 307 aa17.82■□□□□ 0.44
LIMS1-213ENST00000496653 DAGLAQ9Y4D2 1042 aa17.82■□□□□ 0.44
LIMS1-213ENST00000496653 MYH13Q9UKX3 1938 aa17.82■□□□□ 0.44
LIMS1-213ENST00000496653 MROH7-TTC4A0A0A0MT08 1334 aa17.81■□□□□ 0.44
LIMS1-213ENST00000496653 ASTN2O75129 1339 aaPredicted RBP17.81■□□□□ 0.44
LIMS1-213ENST00000496653 TTC41PQ6P2S7 1318 aa17.81■□□□□ 0.44
LIMS1-213ENST00000496653 CLRN2A0PK11 232 aa17.81■□□□□ 0.44
LIMS1-213ENST00000496653 TRAF5O00463 557 aa17.81■□□□□ 0.44
LIMS1-213ENST00000496653 MECOMQ03112 1051 aa17.81■□□□□ 0.44
LIMS1-213ENST00000496653 HOOK2Q96ED9 719 aa17.81■□□□□ 0.44
LIMS1-213ENST00000496653 BCL11AQ9H165 835 aa17.81■□□□□ 0.44
LIMS1-213ENST00000496653 SNRKQ9NRH2 765 aa17.81■□□□□ 0.44
LIMS1-213ENST00000496653 ZNF70Q9UC06 446 aaPredicted RBP17.81■□□□□ 0.44
LIMS1-213ENST00000496653 SMARCA5O60264 1052 aaPredicted RBP17.8■□□□□ 0.44
LIMS1-213ENST00000496653 BAG3O95817 575 aa17.8■□□□□ 0.44
LIMS1-213ENST00000496653 CYP2E1P05181 493 aaPredicted RBP17.8■□□□□ 0.44
LIMS1-213ENST00000496653 PLCG2P16885 1265 aa17.8■□□□□ 0.44
LIMS1-213ENST00000496653 DIXDC1Q155Q3 683 aa17.8■□□□□ 0.44
LIMS1-213ENST00000496653 SUPT20HL1Q3ZLR7 823 aa17.8■□□□□ 0.44
LIMS1-213ENST00000496653 ANKRD45Q5TZF3 282 aa17.8■□□□□ 0.44
LIMS1-213ENST00000496653 NAA16Q6N069 864 aaPredicted RBP17.8■□□□□ 0.44
LIMS1-213ENST00000496653 APOBEC3HQ6NTF7 200 aaKnown RBP17.8■□□□□ 0.44
LIMS1-213ENST00000496653 SMC5Q8IY18 1101 aa17.8■□□□□ 0.44
LIMS1-213ENST00000496653 C2orf69Q8N8R5 385 aa17.8■□□□□ 0.44
LIMS1-213ENST00000496653 NSUN4Q96CB9 384 aaKnown RBP17.8■□□□□ 0.44
LIMS1-213ENST00000496653 CDCA5Q96FF9 252 aa17.8■□□□□ 0.44
LIMS1-213ENST00000496653 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.8■□□□□ 0.44
LIMS1-213ENST00000496653 DEFB129Q9H1M3 183 aa17.8■□□□□ 0.44
LIMS1-213ENST00000496653 TDRD3Q9H7E2 651 aaKnown RBP17.8■□□□□ 0.44
LIMS1-213ENST00000496653 ZNF408Q9H9D4 720 aa17.8■□□□□ 0.44
LIMS1-213ENST00000496653 IDH1O75874 414 aaKnown RBP17.79■□□□□ 0.44
LIMS1-213ENST00000496653 IRX6P78412 446 aaPredicted RBP17.79■□□□□ 0.44
LIMS1-213ENST00000496653 FAM83AQ86UY5 434 aa17.79■□□□□ 0.44
LIMS1-213ENST00000496653 DNAJC2Q99543 621 aaKnown RBP17.79■□□□□ 0.44
LIMS1-213ENST00000496653 HAUS7Q99871 368 aa17.79■□□□□ 0.44
LIMS1-213ENST00000496653 ABT1Q9ULW3 272 aaKnown RBP17.79■□□□□ 0.44
LIMS1-213ENST00000496653 RPAP1Q9BWH6 1393 aaPredicted RBP17.79■□□□□ 0.44
LIMS1-213ENST00000496653 GLRX3O76003 335 aaKnown RBP17.78■□□□□ 0.44
LIMS1-213ENST00000496653 LRRFIP1Q32MZ4 808 aaKnown RBP17.78■□□□□ 0.44
LIMS1-213ENST00000496653 TBC1D9Q6ZT07 1266 aa17.78■□□□□ 0.44
LIMS1-213ENST00000496653 HHIPL1Q96JK4 782 aa17.78■□□□□ 0.44
LIMS1-213ENST00000496653 GBA2Q9HCG7 927 aaPredicted RBP17.78■□□□□ 0.44
LIMS1-213ENST00000496653 PAG1Q9NWQ8 432 aa17.78■□□□□ 0.44
LIMS1-213ENST00000496653 GPR75-ASB3A0A0A6YYF3 556 aa17.77■□□□□ 0.44
LIMS1-213ENST00000496653 MX1P20591 662 aa17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms