RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, human

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-222	ENST00000493919	KLHDC4	Q8TBB5	520 aa		13.74	□□□□□ -0.21
BRCA1-222	ENST00000493919	DDX19B	Q9UMR2	479 aa		13.74	□□□□□ -0.21
BRCA1-222	ENST00000493919	C6orf229	H3BNL8	230 aa		13.73	□□□□□ -0.21
BRCA1-222	ENST00000493919	YY1	P25490	414 aa		13.73	□□□□□ -0.21
BRCA1-222	ENST00000493919	LDHAL6A	Q6ZMR3	332 aa		13.73	□□□□□ -0.21
BRCA1-222	ENST00000493919		A0A1B0GUL6	1792 aa		13.73	□□□□□ -0.21
BRCA1-222	ENST00000493919	ZBTB7B	O15156	539 aa	Predicted RBP	13.72	□□□□□ -0.21
BRCA1-222	ENST00000493919	PPIP5K2	O43314	1243 aa		13.72	□□□□□ -0.21
BRCA1-222	ENST00000493919	UFL1	O94874	794 aa		13.72	□□□□□ -0.21
BRCA1-222	ENST00000493919	C1QTNF12	Q5T7M4	302 aa		13.72	□□□□□ -0.21
BRCA1-222	ENST00000493919	GPR101	Q96P66	508 aa	Predicted RBP	13.72	□□□□□ -0.21
BRCA1-222	ENST00000493919	SIL1	Q9H173	461 aa		13.72	□□□□□ -0.21
BRCA1-222	ENST00000493919	CEP126	Q9P2H0	1117 aa		13.72	□□□□□ -0.21
BRCA1-222	ENST00000493919	MINPP1	Q9UNW1	487 aa		13.72	□□□□□ -0.21
BRCA1-222	ENST00000493919	PAXBP1	Q9Y5B6	917 aa		13.72	□□□□□ -0.21
BRCA1-222	ENST00000493919	XDH	P47989	1333 aa		13.72	□□□□□ -0.21
BRCA1-222	ENST00000493919	CCDC189	A1A4V9	331 aa		13.72	□□□□□ -0.21
BRCA1-222	ENST00000493919	SRGAP3	O43295	1099 aa		13.72	□□□□□ -0.21
BRCA1-222	ENST00000493919	IARS	P41252	1262 aa	Known RBP	13.72	□□□□□ -0.21
BRCA1-222	ENST00000493919	AOC3	Q16853	763 aa		13.72	□□□□□ -0.21
BRCA1-222	ENST00000493919	SUPT20H	Q8NEM7	779 aa		13.72	□□□□□ -0.21
BRCA1-222	ENST00000493919	GGA1	Q9UJY5	639 aa		13.72	□□□□□ -0.21
BRCA1-222	ENST00000493919	DICER1	Q9UPY3	1922 aa	Known RBP	13.71	□□□□□ -0.21
BRCA1-222	ENST00000493919	CHRND	Q07001	517 aa		13.71	□□□□□ -0.21
BRCA1-222	ENST00000493919	ZSCAN30	Q86W11	494 aa		13.71	□□□□□ -0.21
BRCA1-222	ENST00000493919	LARGE2	Q8N3Y3	721 aa		13.71	□□□□□ -0.21
BRCA1-222	ENST00000493919	PUS3	Q9BZE2	481 aa	Known RBP	13.71	□□□□□ -0.21
BRCA1-222	ENST00000493919	NUCKS1	Q9H1E3	243 aa	Known RBP	13.71	□□□□□ -0.21
BRCA1-222	ENST00000493919	RIMBP2	O15034	1052 aa		13.7	□□□□□ -0.22
BRCA1-222	ENST00000493919	ZRANB2	O95218	330 aa	Known RBP eCLIP	13.7	□□□□□ -0.22
BRCA1-222	ENST00000493919	CD151	P48509	253 aa		13.7	□□□□□ -0.22
BRCA1-222	ENST00000493919	ZNF280D	Q6N043	979 aa		13.7	□□□□□ -0.22
BRCA1-222	ENST00000493919	HELB	Q8NG08	1087 aa	Predicted RBP	13.7	□□□□□ -0.22
BRCA1-222	ENST00000493919	TBC1D16	Q8TBP0	767 aa		13.7	□□□□□ -0.22
BRCA1-222	ENST00000493919	POLL	Q9UGP5	575 aa		13.7	□□□□□ -0.22
BRCA1-222	ENST00000493919	PA2G4	Q9UQ80	394 aa	Known RBP	13.7	□□□□□ -0.22
BRCA1-222	ENST00000493919	COL4A5	P29400	1685 aa		13.7	□□□□□ -0.22
BRCA1-222	ENST00000493919	TAF5L	O75529	589 aa		13.7	□□□□□ -0.22
BRCA1-222	ENST00000493919	LRRC24	Q50LG9	513 aa		13.7	□□□□□ -0.22
BRCA1-222	ENST00000493919	JDP2	Q8WYK2	163 aa		13.7	□□□□□ -0.22
BRCA1-222	ENST00000493919	RTFDC1	Q9BY42	306 aa	Predicted RBP	13.7	□□□□□ -0.22
BRCA1-222	ENST00000493919	KDM4C	Q9H3R0	1056 aa		13.7	□□□□□ -0.22
BRCA1-222	ENST00000493919	PNMA6E	A0A0J9YXQ4	647 aa		13.69	□□□□□ -0.22
BRCA1-222	ENST00000493919	RFX5	P48382	616 aa	Predicted RBP	13.69	□□□□□ -0.22
BRCA1-222	ENST00000493919	PTPN12	Q05209	780 aa	Known RBP	13.69	□□□□□ -0.22
BRCA1-222	ENST00000493919	WASHC4	Q2M389	1173 aa		13.69	□□□□□ -0.22
BRCA1-222	ENST00000493919	SASS6	Q6UVJ0	657 aa		13.69	□□□□□ -0.22
BRCA1-222	ENST00000493919	CXorf38	Q8TB03	319 aa		13.69	□□□□□ -0.22
BRCA1-222	ENST00000493919	ANKRD2	Q9GZV1	360 aa		13.69	□□□□□ -0.22
BRCA1-222	ENST00000493919	RPS6KL1	Q9Y6S9	549 aa		13.69	□□□□□ -0.22
BRCA1-222	ENST00000493919	CBX1	P83916	185 aa		13.68	□□□□□ -0.22
BRCA1-222	ENST00000493919	MTX1	Q13505	466 aa		13.68	□□□□□ -0.22
BRCA1-222	ENST00000493919	METTL24	Q5JXM2	366 aa		13.68	□□□□□ -0.22
BRCA1-222	ENST00000493919	RBM26	Q5T8P6	1007 aa	Known RBP	13.68	□□□□□ -0.22
BRCA1-222	ENST00000493919	SNRNP27	Q8WVK2	155 aa	Known RBP	13.68	□□□□□ -0.22
BRCA1-222	ENST00000493919	EYA3	Q99504	573 aa		13.68	□□□□□ -0.22
BRCA1-222	ENST00000493919	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	13.68	□□□□□ -0.22
BRCA1-222	ENST00000493919	WTIP	A6NIX2	430 aa	Predicted RBP	13.68	□□□□□ -0.22
BRCA1-222	ENST00000493919	SNAP23	O00161	211 aa		13.68	□□□□□ -0.22
BRCA1-222	ENST00000493919	TPM3	P06753	285 aa		13.68	□□□□□ -0.22
BRCA1-222	ENST00000493919	ATP2B4	P23634	1241 aa		13.68	□□□□□ -0.22
BRCA1-222	ENST00000493919	KIAA2012	Q0VF49	1180 aa		13.68	□□□□□ -0.22
BRCA1-222	ENST00000493919	KRBA2	Q6ZNG9	492 aa		13.68	□□□□□ -0.22
BRCA1-222	ENST00000493919	NIM1K	Q8IY84	436 aa		13.68	□□□□□ -0.22
BRCA1-222	ENST00000493919	BACH2	Q9BYV9	841 aa		13.68	□□□□□ -0.22
BRCA1-222	ENST00000493919	ZNF804B	A4D1E1	1349 aa		13.67	□□□□□ -0.22
BRCA1-222	ENST00000493919	MROH5	Q6ZUA9	1318 aa		13.67	□□□□□ -0.22
BRCA1-222	ENST00000493919		G3V3G9	751 aa		13.67	□□□□□ -0.22
BRCA1-222	ENST00000493919	EYA2	O00167	538 aa		13.67	□□□□□ -0.22
BRCA1-222	ENST00000493919	CDC37	Q16543	378 aa	Predicted RBP	13.67	□□□□□ -0.22
BRCA1-222	ENST00000493919	DCAF8	Q5TAQ9	597 aa		13.67	□□□□□ -0.22
BRCA1-222	ENST00000493919	CEP85	Q6P2H3	762 aa		13.67	□□□□□ -0.22
BRCA1-222	ENST00000493919	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	13.67	□□□□□ -0.22
BRCA1-222	ENST00000493919	ERCC4	Q92889	916 aa	Predicted RBP	13.67	□□□□□ -0.22
BRCA1-222	ENST00000493919	CRBN	Q96SW2	442 aa		13.67	□□□□□ -0.22
BRCA1-222	ENST00000493919	DBNDD1	Q9H9R9	158 aa		13.67	□□□□□ -0.22
BRCA1-222	ENST00000493919	ZBTB40	Q9NUA8	1239 aa		13.67	□□□□□ -0.22
BRCA1-222	ENST00000493919	TPD52L2	O43399	206 aa	Known RBP	13.66	□□□□□ -0.22
BRCA1-222	ENST00000493919	HS1BP3	Q53T59	392 aa		13.66	□□□□□ -0.22
BRCA1-222	ENST00000493919	FEZ1	Q99689	392 aa		13.66	□□□□□ -0.22
BRCA1-222	ENST00000493919	ZC3H12C	Q9C0D7	883 aa	Known RBP	13.66	□□□□□ -0.22
BRCA1-222	ENST00000493919	MED23	Q9ULK4	1368 aa		13.66	□□□□□ -0.22
BRCA1-222	ENST00000493919	ZC3H4	Q9UPT8	1303 aa	Known RBP	13.66	□□□□□ -0.22
BRCA1-222	ENST00000493919	KLRK1	P26718	216 aa		13.66	□□□□□ -0.22
BRCA1-222	ENST00000493919	DOK7	Q18PE1	504 aa		13.66	□□□□□ -0.22
BRCA1-222	ENST00000493919	LEMD3	Q9Y2U8	911 aa		13.66	□□□□□ -0.22
BRCA1-222	ENST00000493919	ZNF541	Q9H0D2	1346 aa		13.65	□□□□□ -0.22
BRCA1-222	ENST00000493919	CCDC196	A0A1B0GTZ2	297 aa		13.65	□□□□□ -0.22
BRCA1-222	ENST00000493919	PAX7	P23759	505 aa		13.65	□□□□□ -0.22
BRCA1-222	ENST00000493919	BIRC2	Q13490	618 aa		13.65	□□□□□ -0.22
BRCA1-222	ENST00000493919	GORAB	Q5T7V8	394 aa		13.65	□□□□□ -0.22
BRCA1-222	ENST00000493919	RPAIN	Q86UA6	219 aa		13.65	□□□□□ -0.22
BRCA1-222	ENST00000493919	PROCA1	Q8NCQ7	364 aa	Predicted RBP	13.65	□□□□□ -0.22
BRCA1-222	ENST00000493919	COPRS	Q9NQ92	184 aa		13.65	□□□□□ -0.22
BRCA1-222	ENST00000493919	SUFU	Q9UMX1	484 aa		13.65	□□□□□ -0.22
BRCA1-222	ENST00000493919	FRMD4B	Q9Y2L6	1034 aa		13.65	□□□□□ -0.22
BRCA1-222	ENST00000493919	R3HCC1	Q9Y3T6	440 aa	Known RBP	13.65	□□□□□ -0.22
BRCA1-222	ENST00000493919	MSN	P26038	577 aa	Known RBP	13.64	□□□□□ -0.23
BRCA1-222	ENST00000493919	PDE4A	P27815	886 aa		13.64	□□□□□ -0.23
BRCA1-222	ENST00000493919	EIF6	P56537	245 aa	Known RBP	13.64	□□□□□ -0.23

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