RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 LNPKQ9C0E8 428 aa13.26□□□□□ -0.29
VPS13D-210ENST00000489961 SERPINA10Q9UK55 444 aa13.26□□□□□ -0.29
VPS13D-210ENST00000489961 ECM29Q5VYK3 1845 aa13.25□□□□□ -0.29
VPS13D-210ENST00000489961 TTC41PQ6P2S7 1318 aa13.25□□□□□ -0.29
VPS13D-210ENST00000489961 EGFRP00533 1210 aa13.25□□□□□ -0.29
VPS13D-210ENST00000489961 CYP2E1P05181 493 aaPredicted RBP13.25□□□□□ -0.29
VPS13D-210ENST00000489961 POTEIP0CG38 1075 aa13.25□□□□□ -0.29
VPS13D-210ENST00000489961 POTEJP0CG39 1038 aa13.25□□□□□ -0.29
VPS13D-210ENST00000489961 MX1P20591 662 aa13.25□□□□□ -0.29
VPS13D-210ENST00000489961 CRKP46108 304 aa13.25□□□□□ -0.29
VPS13D-210ENST00000489961 HIRAP54198 1017 aaPredicted RBP13.25□□□□□ -0.29
VPS13D-210ENST00000489961 CFAP100Q494V2 611 aa13.25□□□□□ -0.29
VPS13D-210ENST00000489961 CHADLQ6NUI6 762 aa13.25□□□□□ -0.29
VPS13D-210ENST00000489961 TBC1D9Q6ZT07 1266 aa13.25□□□□□ -0.29
VPS13D-210ENST00000489961 SLF2Q8IX21 1173 aa13.25□□□□□ -0.29
VPS13D-210ENST00000489961 MTMR14Q8NCE2 650 aa13.25□□□□□ -0.29
VPS13D-210ENST00000489961 SMC1BQ8NDV3 1235 aa13.25□□□□□ -0.29
VPS13D-210ENST00000489961 ZC3H15Q8WU90 426 aaKnown RBP13.25□□□□□ -0.29
VPS13D-210ENST00000489961 TEKT1Q969V4 418 aa13.25□□□□□ -0.29
VPS13D-210ENST00000489961 MRIQ9BWK5 157 aa13.25□□□□□ -0.29
VPS13D-210ENST00000489961 BOLA2Q9H3K6 86 aa13.25□□□□□ -0.29
VPS13D-210ENST00000489961 RAI14Q9P0K7 980 aa13.25□□□□□ -0.29
VPS13D-210ENST00000489961 LRP2BPQ9P2M1 347 aa13.25□□□□□ -0.29
VPS13D-210ENST00000489961 MYH2Q9UKX2 1941 aa13.24□□□□□ -0.29
VPS13D-210ENST00000489961 ERC2O15083 957 aa13.24□□□□□ -0.29
VPS13D-210ENST00000489961 MYO1BO43795 1136 aa13.24□□□□□ -0.29
VPS13D-210ENST00000489961 IGSF3O75054 1194 aa13.24□□□□□ -0.29
VPS13D-210ENST00000489961 TTF1Q15361 905 aaPredicted RBP13.24□□□□□ -0.29
VPS13D-210ENST00000489961 CCDC136Q96JN2 1154 aa13.24□□□□□ -0.29
VPS13D-210ENST00000489961 DNAJC2Q99543 621 aaKnown RBP13.24□□□□□ -0.29
VPS13D-210ENST00000489961 MAST2Q6P0Q8 1798 aa13.24□□□□□ -0.29
VPS13D-210ENST00000489961 MYO5AQ9Y4I1 1855 aaKnown RBP13.23□□□□□ -0.29
VPS13D-210ENST00000489961 DOCK2Q92608 1830 aa13.23□□□□□ -0.29
VPS13D-210ENST00000489961 WNT10BO00744 389 aa13.23□□□□□ -0.29
VPS13D-210ENST00000489961 GSTO1P78417 241 aa13.23□□□□□ -0.29
VPS13D-210ENST00000489961 NBPF9Q3BBW0 867 aa13.23□□□□□ -0.29
VPS13D-210ENST00000489961 HHIPL2Q6UWX4 724 aa13.23□□□□□ -0.29
VPS13D-210ENST00000489961 CENPQQ7L2Z9 268 aaPredicted RBP13.23□□□□□ -0.29
VPS13D-210ENST00000489961 OTUD7AQ8TE49 926 aaPredicted RBP13.23□□□□□ -0.29
VPS13D-210ENST00000489961 DCPSQ96C86 337 aaKnown RBP13.23□□□□□ -0.29
VPS13D-210ENST00000489961 HAUS7Q99871 368 aa13.23□□□□□ -0.29
VPS13D-210ENST00000489961 PGAP2Q9UHJ9 254 aa13.23□□□□□ -0.29
VPS13D-210ENST00000489961 NDUFB9Q9Y6M9 179 aa13.23□□□□□ -0.29
VPS13D-210ENST00000489961 SALL3Q9BXA9 1300 aa13.22□□□□□ -0.29
VPS13D-210ENST00000489961 SPDYE2BA6NHP3 402 aa13.22□□□□□ -0.29
VPS13D-210ENST00000489961 GOLIM4O00461 696 aa13.22□□□□□ -0.29
VPS13D-210ENST00000489961 IDH1O75874 414 aaKnown RBP13.22□□□□□ -0.29
VPS13D-210ENST00000489961 GLRX3O76003 335 aaKnown RBP13.22□□□□□ -0.29
VPS13D-210ENST00000489961 LDHCP07864 332 aa13.22□□□□□ -0.29
VPS13D-210ENST00000489961 SPDYE6P0CI01 402 aa13.22□□□□□ -0.29
VPS13D-210ENST00000489961 MECOMQ03112 1051 aa13.22□□□□□ -0.29
VPS13D-210ENST00000489961 FSTL1Q12841 308 aa13.22□□□□□ -0.29
VPS13D-210ENST00000489961 MAP3K12Q12852 859 aa13.22□□□□□ -0.29
VPS13D-210ENST00000489961 ZBED3Q96IU2 234 aaPredicted RBP13.22□□□□□ -0.29
VPS13D-210ENST00000489961 PRMT6Q96LA8 375 aaPredicted RBP13.22□□□□□ -0.29
VPS13D-210ENST00000489961 ZDHHC15Q96MV8 337 aa13.22□□□□□ -0.29
VPS13D-210ENST00000489961 PIH1D3Q9NQM4 214 aaKnown RBP13.22□□□□□ -0.29
VPS13D-210ENST00000489961 PAG1Q9NWQ8 432 aa13.22□□□□□ -0.29
VPS13D-210ENST00000489961 GGA3Q9NZ52 723 aa13.22□□□□□ -0.29
VPS13D-210ENST00000489961 STAP2Q9UGK3 403 aa13.22□□□□□ -0.29
VPS13D-210ENST00000489961 PITPNM2Q9BZ72 1349 aa13.21□□□□□ -0.29
VPS13D-210ENST00000489961 PDE1AP54750 535 aa13.21□□□□□ -0.29
VPS13D-210ENST00000489961 DIXDC1Q155Q3 683 aa13.21□□□□□ -0.29
VPS13D-210ENST00000489961 ANGEL2Q5VTE6 544 aaKnown RBP13.21□□□□□ -0.29
VPS13D-210ENST00000489961 TSHZ3Q63HK5 1081 aa13.21□□□□□ -0.29
VPS13D-210ENST00000489961 MAP1SQ66K74 1059 aaPredicted RBP13.21□□□□□ -0.29
VPS13D-210ENST00000489961 NAA16Q6N069 864 aaPredicted RBP13.21□□□□□ -0.29
VPS13D-210ENST00000489961 TMED8Q6PL24 325 aaPredicted RBP13.21□□□□□ -0.29
VPS13D-210ENST00000489961 CNTROBQ8N137 903 aa13.21□□□□□ -0.29
VPS13D-210ENST00000489961 NSUN4Q96CB9 384 aaKnown RBP13.21□□□□□ -0.29
VPS13D-210ENST00000489961 FAM163AQ96GL9 167 aaPredicted RBP13.21□□□□□ -0.29
VPS13D-210ENST00000489961 ANTXR1Q9H6X2 564 aa13.21□□□□□ -0.29
VPS13D-210ENST00000489961 PPP4R2Q9NY27 417 aa13.21□□□□□ -0.29
VPS13D-210ENST00000489961 DAGLAQ9Y4D2 1042 aa13.21□□□□□ -0.29
VPS13D-210ENST00000489961 PCDHAC2Q9Y5I4 1007 aa13.21□□□□□ -0.29
VPS13D-210ENST00000489961 POLR2AP24928 1970 aaKnown RBP13.21□□□□□ -0.29
VPS13D-210ENST00000489961 MROH7-TTC4A0A0A0MT08 1334 aa13.2□□□□□ -0.3
VPS13D-210ENST00000489961 ASTN2O75129 1339 aaPredicted RBP13.2□□□□□ -0.3
VPS13D-210ENST00000489961 AOX1Q06278 1338 aa13.2□□□□□ -0.3
VPS13D-210ENST00000489961 MYH7P12883 1935 aa13.2□□□□□ -0.3
VPS13D-210ENST00000489961 CDC37L1Q7L3B6 337 aa13.2□□□□□ -0.3
VPS13D-210ENST00000489961 APOBEC3FQ8IUX4 373 aaKnown RBP13.2□□□□□ -0.3
VPS13D-210ENST00000489961 SULF1Q8IWU6 871 aa13.2□□□□□ -0.3
VPS13D-210ENST00000489961 PI4K2BQ8TCG2 481 aa13.2□□□□□ -0.3
VPS13D-210ENST00000489961 NOL10Q9BSC4 688 aaKnown RBP13.2□□□□□ -0.3
VPS13D-210ENST00000489961 TDRD3Q9H7E2 651 aaKnown RBP13.2□□□□□ -0.3
VPS13D-210ENST00000489961 TMOD2Q9NZR1 351 aa13.2□□□□□ -0.3
VPS13D-210ENST00000489961 GAKO14976 1311 aa13.19□□□□□ -0.3
VPS13D-210ENST00000489961 CLRN2A0PK11 232 aa13.19□□□□□ -0.3
VPS13D-210ENST00000489961 SPDYE2Q495Y8 402 aa13.19□□□□□ -0.3
VPS13D-210ENST00000489961 APOBEC3HQ6NTF7 200 aaKnown RBP13.19□□□□□ -0.3
VPS13D-210ENST00000489961 KRT26Q7Z3Y9 468 aa13.19□□□□□ -0.3
VPS13D-210ENST00000489961 EDC3Q96F86 508 aaKnown RBP13.19□□□□□ -0.3
VPS13D-210ENST00000489961 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.19□□□□□ -0.32e-8■■□□□ 12.7
VPS13D-210ENST00000489961 VEZTQ9HBM0 779 aa13.19□□□□□ -0.3
VPS13D-210ENST00000489961 ZNF70Q9UC06 446 aaPredicted RBP13.19□□□□□ -0.3
VPS13D-210ENST00000489961 CYP7A1P22680 504 aa13.18□□□□□ -0.3
VPS13D-210ENST00000489961 BTDP43251 543 aa13.18□□□□□ -0.3
VPS13D-210ENST00000489961 TNFAIP1Q13829 316 aa13.18□□□□□ -0.3
VPS13D-210ENST00000489961 ZSCAN25Q6NSZ9 544 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms