RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 MAP2K1Q02750 393 aaPredicted RBP8.76□□□□□ -1.01
VPS50-218ENST00000485994 FMR1Q06787 632 aaKnown RBP eCLIP8.76□□□□□ -1.014e-6■■■■□ 21.6
VPS50-218ENST00000485994 MTX1Q13505 466 aa8.76□□□□□ -1.01
VPS50-218ENST00000485994 LRRC24Q50LG9 513 aa8.76□□□□□ -1.01
VPS50-218ENST00000485994 VARS2Q5ST30 1063 aaKnown RBP8.76□□□□□ -1.01
VPS50-218ENST00000485994 RBM26Q5T8P6 1007 aaKnown RBP8.76□□□□□ -1.01
VPS50-218ENST00000485994 SULF1Q8IWU6 871 aa8.76□□□□□ -1.01
VPS50-218ENST00000485994 ZNF710Q8N1W2 664 aa8.76□□□□□ -1.01
VPS50-218ENST00000485994 COPRSQ9NQ92 184 aa8.76□□□□□ -1.01
VPS50-218ENST00000485994 WBP1LQ9NX94 342 aa8.76□□□□□ -1.01
VPS50-218ENST00000485994 PLIN1O60240 522 aa8.75□□□□□ -1.01
VPS50-218ENST00000485994 BCAR3O75815 825 aa8.75□□□□□ -1.01
VPS50-218ENST00000485994 CHRM1P11229 460 aaPredicted RBP8.75□□□□□ -1.01
VPS50-218ENST00000485994 TRIM27P14373 513 aa8.75□□□□□ -1.01
VPS50-218ENST00000485994 VASPP50552 380 aaPredicted RBP8.75□□□□□ -1.01
VPS50-218ENST00000485994 PDAP1Q13442 181 aaKnown RBP8.75□□□□□ -1.01
VPS50-218ENST00000485994 CAVIN4Q5BKX8 364 aa8.75□□□□□ -1.01
VPS50-218ENST00000485994 ATG9AQ7Z3C6 839 aa8.75□□□□□ -1.01
VPS50-218ENST00000485994 C2orf69Q8N8R5 385 aa8.75□□□□□ -1.01
VPS50-218ENST00000485994 ABT1Q9ULW3 272 aaKnown RBP8.75□□□□□ -1.01
VPS50-218ENST00000485994 SUGT1Q9Y2Z0 365 aa8.75□□□□□ -1.01
VPS50-218ENST00000485994 HSPA1AP0DMV8 641 aaKnown RBP8.74□□□□□ -1.01
VPS50-218ENST00000485994 HSPA1BP0DMV9 641 aaKnown RBP8.74□□□□□ -1.01
VPS50-218ENST00000485994 HDLBPQ00341 1268 aaKnown RBP8.74□□□□□ -1.01
VPS50-218ENST00000485994 NBPF9Q3BBW0 867 aa8.74□□□□□ -1.01
VPS50-218ENST00000485994 METTL24Q5JXM2 366 aa8.74□□□□□ -1.01
VPS50-218ENST00000485994 ANGEL2Q5VTE6 544 aaKnown RBP8.74□□□□□ -1.01
VPS50-218ENST00000485994 ZKSCAN2Q63HK3 967 aa8.74□□□□□ -1.01
VPS50-218ENST00000485994 TMEM92Q6UXU6 159 aa8.74□□□□□ -1.01
VPS50-218ENST00000485994 CERS5Q8N5B7 392 aa8.74□□□□□ -1.01
VPS50-218ENST00000485994 TBC1D22AQ8WUA7 517 aa8.74□□□□□ -1.01
VPS50-218ENST00000485994 LPIN2Q92539 896 aa8.74□□□□□ -1.01
VPS50-218ENST00000485994 CAPNS2Q96L46 248 aa8.74□□□□□ -1.01
VPS50-218ENST00000485994 GBA2Q9HCG7 927 aaPredicted RBP8.74□□□□□ -1.01
VPS50-218ENST00000485994 GGA3Q9NZ52 723 aa8.74□□□□□ -1.01
VPS50-218ENST00000485994 UNCXA6NJT0 531 aa8.73□□□□□ -1.01
VPS50-218ENST00000485994 IFIT1P09914 478 aaKnown RBP8.73□□□□□ -1.01
VPS50-218ENST00000485994 IL15P40933 162 aaPredicted RBP8.73□□□□□ -1.01
VPS50-218ENST00000485994 GYG1P46976 350 aa8.73□□□□□ -1.01
VPS50-218ENST00000485994 PUM3Q15397 648 aaKnown RBP8.73□□□□□ -1.01
VPS50-218ENST00000485994 DLGAP5Q15398 846 aa8.73□□□□□ -1.01
VPS50-218ENST00000485994 KLHDC4Q8TBB5 520 aa8.73□□□□□ -1.01
VPS50-218ENST00000485994 CCDC102AQ96A19 550 aa8.73□□□□□ -1.01
VPS50-218ENST00000485994 MEIS3Q99687 375 aa8.73□□□□□ -1.01
VPS50-218ENST00000485994 MXD3Q9BW11 206 aa8.73□□□□□ -1.01
VPS50-218ENST00000485994 PRDM10Q9NQV6 1147 aa8.73□□□□□ -1.01
VPS50-218ENST00000485994 CEP126Q9P2H0 1117 aa8.73□□□□□ -1.01
VPS50-218ENST00000485994 SERPINA10Q9UK55 444 aa8.73□□□□□ -1.01
VPS50-218ENST00000485994 LRRFIP2Q9Y608 721 aaKnown RBP8.73□□□□□ -1.01
VPS50-218ENST00000485994 GNAI2P04899 355 aa8.72□□□□□ -1.01
VPS50-218ENST00000485994 HUNKP57058 714 aa8.72□□□□□ -1.01
VPS50-218ENST00000485994 NOGQ13253 232 aa8.72□□□□□ -1.01
VPS50-218ENST00000485994 CYP4F22Q6NT55 531 aa8.72□□□□□ -1.01
VPS50-218ENST00000485994 RGMBQ6NW40 437 aa8.72□□□□□ -1.01
VPS50-218ENST00000485994 VPS37DQ86XT2 251 aa8.72□□□□□ -1.01
VPS50-218ENST00000485994 APOBEC3FQ8IUX4 373 aaKnown RBP8.72□□□□□ -1.01
VPS50-218ENST00000485994 KIAA0825Q8IV33 1275 aa8.72□□□□□ -1.01
VPS50-218ENST00000485994 CDCA5Q96FF9 252 aa8.72□□□□□ -1.01
VPS50-218ENST00000485994 PPP2R3BQ9Y5P8 575 aa8.72□□□□□ -1.01
VPS50-218ENST00000485994 ASTN2O75129 1339 aaPredicted RBP8.72□□□□□ -1.01
VPS50-218ENST00000485994 ECM29Q5VYK3 1845 aa8.71□□□□□ -1.01
VPS50-218ENST00000485994 FAM155AB1AL88 458 aaPredicted RBP8.71□□□□□ -1.02
VPS50-218ENST00000485994 ADM5C9JUS6 153 aa8.71□□□□□ -1.02
VPS50-218ENST00000485994 SEMA3EO15041 775 aa8.71□□□□□ -1.02
VPS50-218ENST00000485994 ZBTB7BO15156 539 aaPredicted RBP8.71□□□□□ -1.02
VPS50-218ENST00000485994 CA12O43570 354 aa8.71□□□□□ -1.02
VPS50-218ENST00000485994 MS4A1P11836 297 aa8.71□□□□□ -1.02
VPS50-218ENST00000485994 SLC5A1P13866 664 aa8.71□□□□□ -1.02
VPS50-218ENST00000485994 CTCFP49711 727 aaPredicted RBP8.71□□□□□ -1.02
VPS50-218ENST00000485994 BCAMP50895 628 aa8.71□□□□□ -1.02
VPS50-218ENST00000485994 ATP8B2P98198 1209 aa8.71□□□□□ -1.02
VPS50-218ENST00000485994 MAP3K11Q16584 847 aa8.71□□□□□ -1.02
VPS50-218ENST00000485994 CFAP100Q494V2 611 aa8.71□□□□□ -1.02
VPS50-218ENST00000485994 MFSD14BQ5SR56 506 aa8.71□□□□□ -1.02
VPS50-218ENST00000485994 IFFO2Q5TF58 517 aa8.71□□□□□ -1.02
VPS50-218ENST00000485994 DLK2Q6UY11 383 aa8.71□□□□□ -1.02
VPS50-218ENST00000485994 DZIP1LQ8IYY4 767 aaKnown RBP8.71□□□□□ -1.02
VPS50-218ENST00000485994 WDR66Q8TBY9 1149 aa8.71□□□□□ -1.02
VPS50-218ENST00000485994 FRAT1Q92837 279 aaPredicted RBP8.71□□□□□ -1.02
VPS50-218ENST00000485994 FBXW7Q969H0 707 aa8.71□□□□□ -1.02
VPS50-218ENST00000485994 PRMT6Q96LA8 375 aaPredicted RBP8.71□□□□□ -1.02
VPS50-218ENST00000485994 COL1A1P02452 1464 aaPredicted RBP8.7□□□□□ -1.02
VPS50-218ENST00000485994 FOXN1O15353 648 aa8.7□□□□□ -1.02
VPS50-218ENST00000485994 SRGAP3O43295 1099 aa8.7□□□□□ -1.02
VPS50-218ENST00000485994 MYO1BO43795 1136 aa8.7□□□□□ -1.02
VPS50-218ENST00000485994 NF2P35240 595 aa8.7□□□□□ -1.02
VPS50-218ENST00000485994 ATP2B3Q16720 1220 aa8.7□□□□□ -1.02
VPS50-218ENST00000485994 LDLRAD1Q5T700 205 aa8.7□□□□□ -1.02
VPS50-218ENST00000485994 FKBP1CQ5VVH2 108 aa8.7□□□□□ -1.02
VPS50-218ENST00000485994 HHIPL2Q6UWX4 724 aa8.7□□□□□ -1.02
VPS50-218ENST00000485994 TMEM57Q8N5G2 664 aa8.7□□□□□ -1.02
VPS50-218ENST00000485994 AIDAQ96BJ3 306 aa8.7□□□□□ -1.02
VPS50-218ENST00000485994 DEFB129Q9H1M3 183 aa8.7□□□□□ -1.02
VPS50-218ENST00000485994 ZNF408Q9H9D4 720 aa8.7□□□□□ -1.02
VPS50-218ENST00000485994 AKAP2Q9Y2D5 859 aa8.7□□□□□ -1.02
VPS50-218ENST00000485994 SALL1Q9NSC2 1324 aa8.7□□□□□ -1.02
VPS50-218ENST00000485994 THSD7BQ9C0I4 1608 aa8.69□□□□□ -1.02
VPS50-218ENST00000485994 IGSF3O75054 1194 aa8.69□□□□□ -1.02
VPS50-218ENST00000485994 FRAT2O75474 233 aaPredicted RBP8.69□□□□□ -1.02
VPS50-218ENST00000485994 ZNF157P51786 506 aaPredicted RBP8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms