RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 GNAI2P04899 355 aa20.58■□□□□ 0.89
TRIM54-203ENST00000485306 SUPT20HL1Q3ZLR7 823 aa20.58■□□□□ 0.89
TRIM54-203ENST00000485306 MOB2Q70IA6 237 aa20.58■□□□□ 0.89
TRIM54-203ENST00000485306 GNL3LQ9NVN8 582 aaKnown RBP20.58■□□□□ 0.89
TRIM54-203ENST00000485306 PCDHAC2Q9Y5I4 1007 aa20.58■□□□□ 0.89
TRIM54-203ENST00000485306 RLBP1P12271 317 aa20.57■□□□□ 0.88
TRIM54-203ENST00000485306 HDLBPQ00341 1268 aaKnown RBP20.57■□□□□ 0.88
TRIM54-203ENST00000485306 MTX1Q13505 466 aa20.57■□□□□ 0.88
TRIM54-203ENST00000485306 TNFAIP1Q13829 316 aa20.57■□□□□ 0.88
TRIM54-203ENST00000485306 PRKG1Q13976 671 aa20.57■□□□□ 0.88
TRIM54-203ENST00000485306 ATP2B3Q16720 1220 aa20.57■□□□□ 0.88
TRIM54-203ENST00000485306 RASAL3Q86YV0 1011 aa20.57■□□□□ 0.88
TRIM54-203ENST00000485306 PA2G4Q9UQ80 394 aaKnown RBP20.57■□□□□ 0.88
TRIM54-203ENST00000485306 SUGT1Q9Y2Z0 365 aa20.57■□□□□ 0.88
TRIM54-203ENST00000485306 ARAP2Q8WZ64 1704 aa20.56■□□□□ 0.88
TRIM54-203ENST00000485306 PPP1R12BO60237 982 aaPredicted RBP20.56■□□□□ 0.88
TRIM54-203ENST00000485306 CRKP46108 304 aa20.56■□□□□ 0.88
TRIM54-203ENST00000485306 WDR66Q8TBY9 1149 aa20.56■□□□□ 0.88
TRIM54-203ENST00000485306 MRIQ9BWK5 157 aa20.56■□□□□ 0.88
TRIM54-203ENST00000485306 TSKSQ9UJT2 592 aa20.56■□□□□ 0.88
TRIM54-203ENST00000485306 MAST3O60307 1309 aa20.55■□□□□ 0.88
TRIM54-203ENST00000485306 SPDYE2Q495Y8 402 aa20.55■□□□□ 0.88
TRIM54-203ENST00000485306 ITPRIPQ8IWB1 547 aa20.55■□□□□ 0.88
TRIM54-203ENST00000485306 TEKT1Q969V4 418 aa20.55■□□□□ 0.88
TRIM54-203ENST00000485306 CSRNP1Q96S65 589 aa20.55■□□□□ 0.88
TRIM54-203ENST00000485306 CHMP4BQ9H444 224 aaKnown RBP20.55■□□□□ 0.88
TRIM54-203ENST00000485306 TDRD3Q9H7E2 651 aaKnown RBP20.55■□□□□ 0.88
TRIM54-203ENST00000485306 ZNF70Q9UC06 446 aaPredicted RBP20.55■□□□□ 0.88
TRIM54-203ENST00000485306 ANGEL1Q9UNK9 670 aaKnown RBP20.55■□□□□ 0.88
TRIM54-203ENST00000485306 RASA3Q14644 834 aa20.54■□□□□ 0.88
TRIM54-203ENST00000485306 SAGE1Q9NXZ1 904 aa20.54■□□□□ 0.88
TRIM54-203ENST00000485306 AKAP2Q9Y2D5 859 aa20.54■□□□□ 0.88
TRIM54-203ENST00000485306 AKAP11Q9UKA4 1901 aa20.54■□□□□ 0.88
TRIM54-203ENST00000485306 MYH13Q9UKX3 1938 aa20.53■□□□□ 0.88
TRIM54-203ENST00000485306 TNNI2P48788 182 aa20.53■□□□□ 0.88
TRIM54-203ENST00000485306 PANK1Q8TE04 598 aa20.53■□□□□ 0.88
TRIM54-203ENST00000485306 DDX19BQ9UMR2 479 aa20.53■□□□□ 0.88
TRIM54-203ENST00000485306 UNCXA6NJT0 531 aa20.52■□□□□ 0.88
TRIM54-203ENST00000485306 CAPN15O75808 1086 aa20.52■□□□□ 0.88
TRIM54-203ENST00000485306 MVPQ14764 893 aaKnown RBP20.52■□□□□ 0.88
TRIM54-203ENST00000485306 GRIK5Q16478 980 aa20.52■□□□□ 0.88
TRIM54-203ENST00000485306 LDLRAD1Q5T700 205 aa20.52■□□□□ 0.88
TRIM54-203ENST00000485306 RNF186Q9NXI6 227 aa20.52■□□□□ 0.88
TRIM54-203ENST00000485306 PNMA6EA0A0J9YXQ4 647 aa20.51■□□□□ 0.87
TRIM54-203ENST00000485306 SEMA3EO15041 775 aa20.51■□□□□ 0.87
TRIM54-203ENST00000485306 ZBTB7BO15156 539 aaPredicted RBP20.51■□□□□ 0.87
TRIM54-203ENST00000485306 TRPA1O75762 1119 aa20.51■□□□□ 0.87
TRIM54-203ENST00000485306 MAP3K11Q16584 847 aa20.51■□□□□ 0.87
TRIM54-203ENST00000485306 NBPF12Q5TAG4 269 aaPredicted RBP20.51■□□□□ 0.87
TRIM54-203ENST00000485306 C20orf194Q5TEA3 1177 aa20.51■□□□□ 0.87
TRIM54-203ENST00000485306 SLC10A4Q96EP9 437 aa20.51■□□□□ 0.87
TRIM54-203ENST00000485306 ZDHHC15Q96MV8 337 aa20.51■□□□□ 0.87
TRIM54-203ENST00000485306 TMOD2Q9NZR1 351 aa20.51■□□□□ 0.87
TRIM54-203ENST00000485306 DENND2AQ9ULE3 1009 aa20.51■□□□□ 0.87
TRIM54-203ENST00000485306 AOX1Q06278 1338 aa20.51■□□□□ 0.87
TRIM54-203ENST00000485306 TCP10L2B9ZVM9 353 aa20.5■□□□□ 0.87
TRIM54-203ENST00000485306 NEFLP07196 543 aa20.5■□□□□ 0.87
TRIM54-203ENST00000485306 IREB2P48200 963 aaKnown RBP20.5■□□□□ 0.87
TRIM54-203ENST00000485306 G3BP1Q13283 466 aaKnown RBP eCLIP20.5■□□□□ 0.87
TRIM54-203ENST00000485306 HHIPL2Q6UWX4 724 aa20.5■□□□□ 0.87
TRIM54-203ENST00000485306 C1orf115Q9H7X2 142 aa20.5■□□□□ 0.87
TRIM54-203ENST00000485306 TIMM10P62072 90 aa20.49■□□□□ 0.87
TRIM54-203ENST00000485306 TFCP2Q12800 502 aa20.49■□□□□ 0.87
TRIM54-203ENST00000485306 AAMPQ13685 434 aa20.49■□□□□ 0.87
TRIM54-203ENST00000485306 CCDC102BQ68D86 513 aa20.49■□□□□ 0.87
TRIM54-203ENST00000485306 COG6Q9Y2V7 657 aa20.49■□□□□ 0.87
TRIM54-203ENST00000485306 LDHBP07195 334 aaKnown RBP20.48■□□□□ 0.87
TRIM54-203ENST00000485306 PHKA1P46020 1223 aa20.48■□□□□ 0.87
TRIM54-203ENST00000485306 SREBF2Q12772 1141 aa20.48■□□□□ 0.87
TRIM54-203ENST00000485306 ZGPATQ8N5A5 531 aaKnown RBP20.48■□□□□ 0.87
TRIM54-203ENST00000485306 FZD1Q9UP38 647 aa20.48■□□□□ 0.87
TRIM54-203ENST00000485306 CASP8AP2Q9UKL3 1982 aa20.48■□□□□ 0.87
TRIM54-203ENST00000485306 A0A1B0GUL7 405 aa20.47■□□□□ 0.87
TRIM54-203ENST00000485306 ZBTB22O15209 634 aa20.47■□□□□ 0.87
TRIM54-203ENST00000485306 USP2O75604 605 aaPredicted RBP20.47■□□□□ 0.87
TRIM54-203ENST00000485306 TM4SF4P48230 202 aa20.47■□□□□ 0.87
TRIM54-203ENST00000485306 ATP8B2P98198 1209 aa20.47■□□□□ 0.87
TRIM54-203ENST00000485306 POLA2Q14181 598 aa20.47■□□□□ 0.87
TRIM54-203ENST00000485306 NEUROD6Q96NK8 337 aa20.47■□□□□ 0.87
TRIM54-203ENST00000485306 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.47■□□□□ 0.87
TRIM54-203ENST00000485306 ADORA1P30542 326 aa20.46■□□□□ 0.87
TRIM54-203ENST00000485306 INHBEP58166 350 aa20.46■□□□□ 0.87
TRIM54-203ENST00000485306 MKRN3Q13064 507 aaKnown RBP20.46■□□□□ 0.87
TRIM54-203ENST00000485306 GORABQ5T7V8 394 aa20.46■□□□□ 0.87
TRIM54-203ENST00000485306 FKBP1CQ5VVH2 108 aa20.46■□□□□ 0.87
TRIM54-203ENST00000485306 SPRYD7Q5W111 196 aa20.46■□□□□ 0.87
TRIM54-203ENST00000485306 APOBEC3HQ6NTF7 200 aaKnown RBP20.46■□□□□ 0.87
TRIM54-203ENST00000485306 ANKRD13AQ8IZ07 590 aa20.46■□□□□ 0.87
TRIM54-203ENST00000485306 HOOK2Q96ED9 719 aa20.46■□□□□ 0.87
TRIM54-203ENST00000485306 XAGE2Q96GT9 111 aa20.46■□□□□ 0.87
TRIM54-203ENST00000485306 TMEM39BQ9GZU3 492 aa20.46■□□□□ 0.87
TRIM54-203ENST00000485306 SALL1Q9NSC2 1324 aa20.46■□□□□ 0.87
TRIM54-203ENST00000485306 ZBTB48P10074 688 aaPredicted RBP20.45■□□□□ 0.86
TRIM54-203ENST00000485306 FAM83AQ86UY5 434 aa20.45■□□□□ 0.86
TRIM54-203ENST00000485306 SSH3Q8TE77 659 aa20.45■□□□□ 0.86
TRIM54-203ENST00000485306 TEPSINQ96N21 525 aa20.45■□□□□ 0.86
TRIM54-203ENST00000485306 SSC5DA1L4H1 1573 aa20.45■□□□□ 0.86
TRIM54-203ENST00000485306 MANSC4A6NHS7 340 aaPredicted RBP20.44■□□□□ 0.86
TRIM54-203ENST00000485306 SPTY2D1Q68D10 685 aaPredicted RBP20.44■□□□□ 0.86
TRIM54-203ENST00000485306 CRBNQ96SW2 442 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms