RNA–Protein interactions for RNA: ENST00000479051.1

VARS-224, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 612 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-224ENST00000479051 ZBED3Q96IU2 234 aaPredicted RBP25.1■■□□□ 1.61
VARS-224ENST00000479051 DCTPP1Q9H773 170 aa25.1■■□□□ 1.61
VARS-224ENST00000479051 ASTN2O75129 1339 aaPredicted RBP25.1■■□□□ 1.61
VARS-224ENST00000479051 TMEM88BA6NKF7 163 aa25.09■■□□□ 1.61
VARS-224ENST00000479051 TRAF5O00463 557 aa25.09■■□□□ 1.61
VARS-224ENST00000479051 APOBEC3FQ8IUX4 373 aaKnown RBP25.09■■□□□ 1.61
VARS-224ENST00000479051 ZNF512BQ96KM6 892 aaPredicted RBP25.09■■□□□ 1.61
VARS-224ENST00000479051 MRIQ9BWK5 157 aa25.09■■□□□ 1.61
VARS-224ENST00000479051 HMG20BQ9P0W2 317 aa25.09■■□□□ 1.61
VARS-224ENST00000479051 GRIK5Q16478 980 aa25.08■■□□□ 1.61
VARS-224ENST00000479051 BCL11AQ9H165 835 aa25.08■■□□□ 1.61
VARS-224ENST00000479051 CREBZFQ9NS37 354 aa25.08■■□□□ 1.61
VARS-224ENST00000479051 TLR7Q9NYK1 1049 aaKnown RBP25.08■■□□□ 1.61
VARS-224ENST00000479051 ABCF2Q9UG63 623 aa25.08■■□□□ 1.61
VARS-224ENST00000479051 MCAMP43121 646 aa25.07■■□□□ 1.6
VARS-224ENST00000479051 PRMT6Q96LA8 375 aaPredicted RBP25.07■■□□□ 1.6
VARS-224ENST00000479051 ADM5C9JUS6 153 aa25.06■■□□□ 1.6
VARS-224ENST00000479051 PRDX5P30044 214 aa25.06■■□□□ 1.6
VARS-224ENST00000479051 HHIPL2Q6UWX4 724 aa25.06■■□□□ 1.6
VARS-224ENST00000479051 ERICH6Q7L0X2 663 aa25.06■■□□□ 1.6
VARS-224ENST00000479051 DZIP1Q86YF9 867 aaKnown RBP25.06■■□□□ 1.6
VARS-224ENST00000479051 SLF2Q8IX21 1173 aa25.06■■□□□ 1.6
VARS-224ENST00000479051 EXOC6Q8TAG9 804 aa25.06■■□□□ 1.6
VARS-224ENST00000479051 CELF2O95319 508 aaKnown RBP25.05■■□□□ 1.6
VARS-224ENST00000479051 ZDHHC15Q96MV8 337 aa25.05■■□□□ 1.6
VARS-224ENST00000479051 ZNF408Q9H9D4 720 aa25.05■■□□□ 1.6
VARS-224ENST00000479051 POLR2AP24928 1970 aaKnown RBP25.05■■□□□ 1.6
VARS-224ENST00000479051 TRPM7Q96QT4 1865 aa25.04■■□□□ 1.6
VARS-224ENST00000479051 PI16Q6UXB8 463 aa25.04■■□□□ 1.6
VARS-224ENST00000479051 VEZTQ9HBM0 779 aa25.04■■□□□ 1.6
VARS-224ENST00000479051 ZBTB47Q9UFB7 747 aaPredicted RBP25.04■■□□□ 1.6
VARS-224ENST00000479051 PCDHAC2Q9Y5I4 1007 aa25.04■■□□□ 1.6
VARS-224ENST00000479051 ECM29Q5VYK3 1845 aa25.03■■□□□ 1.6
VARS-224ENST00000479051 CLRN2A0PK11 232 aa25.03■■□□□ 1.6
VARS-224ENST00000479051 HDAC1Q13547 482 aaPredicted RBP25.03■■□□□ 1.6
VARS-224ENST00000479051 TNFAIP1Q13829 316 aa25.03■■□□□ 1.6
VARS-224ENST00000479051 SNRKQ9NRH2 765 aa25.03■■□□□ 1.6
VARS-224ENST00000479051 TMOD2Q9NZR1 351 aa25.03■■□□□ 1.6
VARS-224ENST00000479051 FMR1Q06787 632 aaKnown RBP eCLIP25.02■■□□□ 1.62e-8■■■■■ 27.8
VARS-224ENST00000479051 SPDYE2Q495Y8 402 aa25.02■■□□□ 1.6
VARS-224ENST00000479051 CDCA5Q96FF9 252 aa25.02■■□□□ 1.6
VARS-224ENST00000479051 RAI14Q9P0K7 980 aa25.02■■□□□ 1.6
VARS-224ENST00000479051 LRP2BPQ9P2M1 347 aa25.02■■□□□ 1.6
VARS-224ENST00000479051 IGSF3O75054 1194 aa25.01■■□□□ 1.59
VARS-224ENST00000479051 GSTO1P78417 241 aa25.01■■□□□ 1.59
VARS-224ENST00000479051 GCC1Q96CN9 775 aa25.01■■□□□ 1.59
VARS-224ENST00000479051 RWDD1Q9H446 243 aaPredicted RBP25.01■■□□□ 1.59
VARS-224ENST00000479051 TDRD3Q9H7E2 651 aaKnown RBP25.01■■□□□ 1.59
VARS-224ENST00000479051 ZNF70Q9UC06 446 aaPredicted RBP25.01■■□□□ 1.59
VARS-224ENST00000479051 ABT1Q9ULW3 272 aaKnown RBP25.01■■□□□ 1.59
VARS-224ENST00000479051 PPP2R3BQ9Y5P8 575 aa25.01■■□□□ 1.59
VARS-224ENST00000479051 SMARCA5O60264 1052 aaPredicted RBP25■■□□□ 1.59
VARS-224ENST00000479051 NF2P35240 595 aa25■■□□□ 1.59
VARS-224ENST00000479051 TNNI2P48788 182 aa25■■□□□ 1.59
VARS-224ENST00000479051 HTRA3P83110 453 aa25■■□□□ 1.59
VARS-224ENST00000479051 DIXDC1Q155Q3 683 aa25■■□□□ 1.59
VARS-224ENST00000479051 CST9Q5W186 159 aa25■■□□□ 1.59
VARS-224ENST00000479051 TBC1D9Q6ZT07 1266 aa25■■□□□ 1.59
VARS-224ENST00000479051 LDHCP07864 332 aa24.99■■□□□ 1.59
VARS-224ENST00000479051 ZAP70P43403 619 aa24.99■■□□□ 1.59
VARS-224ENST00000479051 PPIL4Q8WUA2 492 aaKnown RBP eCLIP24.99■■□□□ 1.59
VARS-224ENST00000479051 GPATCH3Q96I76 525 aa24.99■■□□□ 1.59
VARS-224ENST00000479051 DEFB129Q9H1M3 183 aa24.99■■□□□ 1.59
VARS-224ENST00000479051 SCAF8Q9UPN6 1271 aaKnown RBP24.99■■□□□ 1.59
VARS-224ENST00000479051 DAGLAQ9Y4D2 1042 aa24.99■■□□□ 1.59
VARS-224ENST00000479051 CYP2E1P05181 493 aaPredicted RBP24.98■■□□□ 1.59
VARS-224ENST00000479051 IRX6P78412 446 aaPredicted RBP24.98■■□□□ 1.59
VARS-224ENST00000479051 MECOMQ03112 1051 aa24.98■■□□□ 1.59
VARS-224ENST00000479051 APOBEC3HQ6NTF7 200 aaKnown RBP24.98■■□□□ 1.59
VARS-224ENST00000479051 C2orf69Q8N8R5 385 aa24.98■■□□□ 1.59
VARS-224ENST00000479051 AKAP11Q9UKA4 1901 aa24.98■■□□□ 1.59
VARS-224ENST00000479051 DLK2Q6UY11 383 aa24.97■■□□□ 1.59
VARS-224ENST00000479051 FAM163AQ96GL9 167 aaPredicted RBP24.97■■□□□ 1.59
VARS-224ENST00000479051 GBA2Q9HCG7 927 aaPredicted RBP24.97■■□□□ 1.59
VARS-224ENST00000479051 GAKO14976 1311 aa24.96■■□□□ 1.59
VARS-224ENST00000479051 AOX1Q06278 1338 aa24.96■■□□□ 1.59
VARS-224ENST00000479051 TTF1Q15361 905 aaPredicted RBP24.96■■□□□ 1.59
VARS-224ENST00000479051 TLL2Q9Y6L7 1015 aa24.96■■□□□ 1.59
VARS-224ENST00000479051 MROH7-TTC4A0A0A0MT08 1334 aa24.95■■□□□ 1.58
VARS-224ENST00000479051 MYH2Q9UKX2 1941 aa24.95■■□□□ 1.58
VARS-224ENST00000479051 TCP10L2B9ZVM9 353 aa24.95■■□□□ 1.58
VARS-224ENST00000479051 FKBP1CQ5VVH2 108 aa24.95■■□□□ 1.58
VARS-224ENST00000479051 NSUN4Q96CB9 384 aaKnown RBP24.95■■□□□ 1.58
VARS-224ENST00000479051 NOL10Q9BSC4 688 aaKnown RBP24.95■■□□□ 1.58
VARS-224ENST00000479051 ATP5JP18859 108 aa24.94■■□□□ 1.58
VARS-224ENST00000479051 FKBP1BP68106 108 aa24.94■■□□□ 1.58
VARS-224ENST00000479051 RASA3Q14644 834 aa24.94■■□□□ 1.58
VARS-224ENST00000479051 SUPT20HL1Q3ZLR7 823 aa24.94■■□□□ 1.58
VARS-224ENST00000479051 PRAMEF18Q5VWM3 479 aa24.94■■□□□ 1.58
VARS-224ENST00000479051 NAA16Q6N069 864 aaPredicted RBP24.94■■□□□ 1.58
VARS-224ENST00000479051 ECHDC1Q9NTX5 307 aa24.94■■□□□ 1.58
VARS-224ENST00000479051 USP40Q9NVE5 1235 aa24.94■■□□□ 1.58
VARS-224ENST00000479051 IDH1O75874 414 aaKnown RBP24.93■■□□□ 1.58
VARS-224ENST00000479051 DEFB115Q30KQ5 88 aa24.93■■□□□ 1.58
VARS-224ENST00000479051 ANKRD45Q5TZF3 282 aa24.93■■□□□ 1.58
VARS-224ENST00000479051 CDC42EP5Q6NZY7 148 aa24.93■■□□□ 1.58
VARS-224ENST00000479051 KLRG1Q96E93 195 aa24.93■■□□□ 1.58
VARS-224ENST00000479051 DNAJC2Q99543 621 aaKnown RBP24.93■■□□□ 1.58
VARS-224ENST00000479051 PIH1D3Q9NQM4 214 aaKnown RBP24.93■■□□□ 1.58
VARS-224ENST00000479051 CNTNAP1P78357 1384 aa24.93■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms