RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 SUPT20HL1Q3ZLR7 823 aa23.5■■□□□ 1.35
CCDC88B-206ENST00000473405 CDAN1Q8IWY9 1227 aa23.5■■□□□ 1.35
CCDC88B-206ENST00000473405 LRRFIP2Q9Y608 721 aaKnown RBP23.5■■□□□ 1.35
CCDC88B-206ENST00000473405 CENPFP49454 3210 aa23.5■■□□□ 1.35
CCDC88B-206ENST00000473405 FRAT2O75474 233 aaPredicted RBP23.49■■□□□ 1.35
CCDC88B-206ENST00000473405 SREBF2Q12772 1141 aa23.49■■□□□ 1.35
CCDC88B-206ENST00000473405 TNFAIP1Q13829 316 aa23.49■■□□□ 1.35
CCDC88B-206ENST00000473405 TEPSINQ96N21 525 aa23.49■■□□□ 1.35
CCDC88B-206ENST00000473405 MEIS3Q99687 375 aa23.49■■□□□ 1.35
CCDC88B-206ENST00000473405 TBC1D8O95759 1140 aa23.48■■□□□ 1.35
CCDC88B-206ENST00000473405 HDLBPQ00341 1268 aaKnown RBP23.48■■□□□ 1.35
CCDC88B-206ENST00000473405 LPIN2Q92539 896 aa23.48■■□□□ 1.35
CCDC88B-206ENST00000473405 SIL1Q9H173 461 aa23.48■■□□□ 1.35
CCDC88B-206ENST00000473405 UNCXA6NJT0 531 aa23.47■■□□□ 1.35
CCDC88B-206ENST00000473405 CIAO1O76071 339 aa23.47■■□□□ 1.35
CCDC88B-206ENST00000473405 SLC5A1P13866 664 aa23.47■■□□□ 1.35
CCDC88B-206ENST00000473405 ARHGAP45Q92619 1136 aa23.47■■□□□ 1.35
CCDC88B-206ENST00000473405 WNK4Q96J92 1243 aa23.47■■□□□ 1.35
CCDC88B-206ENST00000473405 FBXO3Q9UK99 471 aa23.47■■□□□ 1.35
CCDC88B-206ENST00000473405 USP2O75604 605 aaPredicted RBP23.46■■□□□ 1.35
CCDC88B-206ENST00000473405 ZBTB48P10074 688 aaPredicted RBP23.46■■□□□ 1.35
CCDC88B-206ENST00000473405 INTS3Q68E01 1043 aaKnown RBP23.46■■□□□ 1.35
CCDC88B-206ENST00000473405 TEKT1Q969V4 418 aa23.46■■□□□ 1.35
CCDC88B-206ENST00000473405 SLC10A4Q96EP9 437 aa23.46■■□□□ 1.35
CCDC88B-206ENST00000473405 CFHR5Q9BXR6 569 aa23.46■■□□□ 1.35
CCDC88B-206ENST00000473405 TMEM39BQ9GZU3 492 aa23.46■■□□□ 1.35
CCDC88B-206ENST00000473405 TCP10L2B9ZVM9 353 aa23.45■■□□□ 1.34
CCDC88B-206ENST00000473405 IREB2P48200 963 aaKnown RBP23.45■■□□□ 1.34
CCDC88B-206ENST00000473405 CTU1Q7Z7A3 348 aaKnown RBP23.45■■□□□ 1.34
CCDC88B-206ENST00000473405 ZNF296Q8WUU4 475 aaPredicted RBP23.45■■□□□ 1.34
CCDC88B-206ENST00000473405 ZDHHC15Q96MV8 337 aa23.45■■□□□ 1.34
CCDC88B-206ENST00000473405 PA2G4Q9UQ80 394 aaKnown RBP23.45■■□□□ 1.34
CCDC88B-206ENST00000473405 GJA5P36382 358 aa23.44■■□□□ 1.34
CCDC88B-206ENST00000473405 ATP2B3Q16720 1220 aa23.44■■□□□ 1.34
CCDC88B-206ENST00000473405 NOM1Q5C9Z4 860 aaKnown RBP23.44■■□□□ 1.34
CCDC88B-206ENST00000473405 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.44■■□□□ 1.34
CCDC88B-206ENST00000473405 SUGT1Q9Y2Z0 365 aa23.44■■□□□ 1.34
CCDC88B-206ENST00000473405 MAST3O60307 1309 aa23.43■■□□□ 1.34
CCDC88B-206ENST00000473405 MANSC4A6NHS7 340 aaPredicted RBP23.43■■□□□ 1.34
CCDC88B-206ENST00000473405 RGS19P49795 217 aa23.43■■□□□ 1.34
CCDC88B-206ENST00000473405 CACNB3P54284 484 aa23.43■■□□□ 1.34
CCDC88B-206ENST00000473405 ANKRD13AQ8IZ07 590 aa23.43■■□□□ 1.34
CCDC88B-206ENST00000473405 MRIQ9BWK5 157 aa23.43■■□□□ 1.34
CCDC88B-206ENST00000473405 R3HDMLQ9H3Y0 253 aa23.43■■□□□ 1.34
CCDC88B-206ENST00000473405 GPR25O00155 361 aa23.42■■□□□ 1.34
CCDC88B-206ENST00000473405 APOBEC3HQ6NTF7 200 aaKnown RBP23.42■■□□□ 1.34
CCDC88B-206ENST00000473405 COPRSQ9NQ92 184 aa23.42■■□□□ 1.34
CCDC88B-206ENST00000473405 CEP126Q9P2H0 1117 aa23.42■■□□□ 1.34
CCDC88B-206ENST00000473405 HDAC5Q9UQL6 1122 aa23.42■■□□□ 1.34
CCDC88B-206ENST00000473405 IGF2BP3O00425 579 aaKnown RBP eCLIP23.41■■□□□ 1.34
CCDC88B-206ENST00000473405 TRIM27P14373 513 aa23.41■■□□□ 1.34
CCDC88B-206ENST00000473405 IL15P40933 162 aaPredicted RBP23.41■■□□□ 1.34
CCDC88B-206ENST00000473405 TNNI2P48788 182 aa23.41■■□□□ 1.34
CCDC88B-206ENST00000473405 IFNL1Q8IU54 200 aa23.41■■□□□ 1.34
CCDC88B-206ENST00000473405 WDR66Q8TBY9 1149 aa23.41■■□□□ 1.34
CCDC88B-206ENST00000473405 TNNQ9UQP3 1299 aa23.41■■□□□ 1.34
CCDC88B-206ENST00000473405 BCAR3O75815 825 aa23.4■■□□□ 1.34
CCDC88B-206ENST00000473405 INHBEP58166 350 aa23.4■■□□□ 1.34
CCDC88B-206ENST00000473405 HHIPL2Q6UWX4 724 aa23.4■■□□□ 1.34
CCDC88B-206ENST00000473405 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.4■■□□□ 1.34
CCDC88B-206ENST00000473405 ALDH1A1P00352 501 aa23.39■■□□□ 1.33
CCDC88B-206ENST00000473405 GNAI3P08754 354 aa23.39■■□□□ 1.33
CCDC88B-206ENST00000473405 MTX1Q13505 466 aa23.39■■□□□ 1.33
CCDC88B-206ENST00000473405 MYH2Q9UKX2 1941 aa23.39■■□□□ 1.33
CCDC88B-206ENST00000473405 RPAP1Q9BWH6 1393 aaPredicted RBP23.39■■□□□ 1.33
CCDC88B-206ENST00000473405 BRCA2P51587 3418 aa23.39■■□□□ 1.33
CCDC88B-206ENST00000473405 PRDX5P30044 214 aa23.38■■□□□ 1.33
CCDC88B-206ENST00000473405 PHKA1P46020 1223 aa23.38■■□□□ 1.33
CCDC88B-206ENST00000473405 VGLL4Q14135 290 aa23.38■■□□□ 1.33
CCDC88B-206ENST00000473405 FKBP1CQ5VVH2 108 aa23.38■■□□□ 1.33
CCDC88B-206ENST00000473405 ATF7IPQ6VMQ6 1270 aa23.38■■□□□ 1.33
CCDC88B-206ENST00000473405 FAM83AQ86UY5 434 aa23.38■■□□□ 1.33
CCDC88B-206ENST00000473405 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.38■■□□□ 1.33
CCDC88B-206ENST00000473405 ELP3Q9H9T3 547 aa23.38■■□□□ 1.33
CCDC88B-206ENST00000473405 ADORA1P30542 326 aa23.37■■□□□ 1.33
CCDC88B-206ENST00000473405 CNKSR2Q8WXI2 1034 aa23.37■■□□□ 1.33
CCDC88B-206ENST00000473405 OPTNQ96CV9 577 aa23.37■■□□□ 1.33
CCDC88B-206ENST00000473405 DAGLAQ9Y4D2 1042 aa23.37■■□□□ 1.33
CCDC88B-206ENST00000473405 SALL1Q9NSC2 1324 aa23.36■■□□□ 1.33
CCDC88B-206ENST00000473405 IPO8O15397 1037 aaKnown RBP23.36■■□□□ 1.33
CCDC88B-206ENST00000473405 SRGAP3O43295 1099 aa23.36■■□□□ 1.33
CCDC88B-206ENST00000473405 DIXDC1Q155Q3 683 aa23.36■■□□□ 1.33
CCDC88B-206ENST00000473405 MIER1Q8N108 512 aa23.36■■□□□ 1.33
CCDC88B-206ENST00000473405 PTPN18Q99952 460 aa23.36■■□□□ 1.33
CCDC88B-206ENST00000473405 TMOD2Q9NZR1 351 aa23.36■■□□□ 1.33
CCDC88B-206ENST00000473405 TESPA1A2RU30 521 aaPredicted RBP23.35■■□□□ 1.33
CCDC88B-206ENST00000473405 SEMA3EO15041 775 aa23.35■■□□□ 1.33
CCDC88B-206ENST00000473405 ZBTB22O15209 634 aa23.35■■□□□ 1.33
CCDC88B-206ENST00000473405 FKTNO75072 461 aa23.35■■□□□ 1.33
CCDC88B-206ENST00000473405 MLLT1Q03111 559 aaPredicted RBP23.35■■□□□ 1.33
CCDC88B-206ENST00000473405 FRAT1Q92837 279 aaPredicted RBP23.35■■□□□ 1.33
CCDC88B-206ENST00000473405 GNL3LQ9NVN8 582 aaKnown RBP23.35■■□□□ 1.33
CCDC88B-206ENST00000473405 DOCK2Q92608 1830 aa23.35■■□□□ 1.33
CCDC88B-206ENST00000473405 AK9Q5TCS8 1911 aa23.35■■□□□ 1.33
CCDC88B-206ENST00000473405 PKN2Q16513 984 aaKnown RBP23.34■■□□□ 1.33
CCDC88B-206ENST00000473405 CCDC102BQ68D86 513 aa23.34■■□□□ 1.33
CCDC88B-206ENST00000473405 CLUAP1Q96AJ1 413 aa23.34■■□□□ 1.33
CCDC88B-206ENST00000473405 MS4A4AQ96JQ5 239 aa23.34■■□□□ 1.33
CCDC88B-206ENST00000473405 DENND2AQ9ULE3 1009 aa23.34■■□□□ 1.33
CCDC88B-206ENST00000473405 HPS5Q9UPZ3 1129 aa23.34■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms