RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 CDPF1Q6NVV7 123 aa7.44□□□□□ -1.22
VPS29-202ENST00000447578 FBLIM1Q8WUP2 373 aa7.44□□□□□ -1.22
VPS29-202ENST00000447578 SUGCTQ9HAC7 445 aa7.44□□□□□ -1.22
VPS29-202ENST00000447578 CYP4F12Q9HCS2 524 aa7.44□□□□□ -1.22
VPS29-202ENST00000447578 PODXL2Q9NZ53 605 aa7.44□□□□□ -1.22
VPS29-202ENST00000447578 PIM2Q9P1W9 311 aa7.44□□□□□ -1.22
VPS29-202ENST00000447578 PPP1R15AO75807 674 aaPredicted RBP7.43□□□□□ -1.22
VPS29-202ENST00000447578 C8AP07357 584 aa7.43□□□□□ -1.22
VPS29-202ENST00000447578 SF3B2Q13435 895 aaKnown RBP7.43□□□□□ -1.22
VPS29-202ENST00000447578 OGFOD2Q6N063 350 aa7.43□□□□□ -1.22
VPS29-202ENST00000447578 GJD3Q8N144 294 aa7.43□□□□□ -1.22
VPS29-202ENST00000447578 SOX17Q9H6I2 414 aaPredicted RBP7.43□□□□□ -1.22
VPS29-202ENST00000447578 ATG3Q9NT62 314 aa7.43□□□□□ -1.22
VPS29-202ENST00000447578 FAM95CA0A1B0GW59 222 aa7.42□□□□□ -1.22
VPS29-202ENST00000447578 USP11P51784 963 aa7.42□□□□□ -1.22
VPS29-202ENST00000447578 ZNF423Q2M1K9 1284 aa7.42□□□□□ -1.22
VPS29-202ENST00000447578 SPRED3Q2MJR0 410 aa7.42□□□□□ -1.22
VPS29-202ENST00000447578 CTSBP07858 339 aa7.41□□□□□ -1.22
VPS29-202ENST00000447578 ADMP35318 185 aa7.41□□□□□ -1.22
VPS29-202ENST00000447578 GRIA4P48058 902 aa7.41□□□□□ -1.22
VPS29-202ENST00000447578 SOX4Q06945 474 aaPredicted RBP7.41□□□□□ -1.22
VPS29-202ENST00000447578 C2CD4AQ8NCU7 369 aaPredicted RBP7.41□□□□□ -1.22
VPS29-202ENST00000447578 OSBPL1AQ9BXW6 950 aa7.41□□□□□ -1.22
VPS29-202ENST00000447578 NRSN2Q9GZP1 204 aa7.41□□□□□ -1.22
VPS29-202ENST00000447578 MTMR7Q9Y216 660 aa7.41□□□□□ -1.22
VPS29-202ENST00000447578 LEMD3Q9Y2U8 911 aa7.41□□□□□ -1.22
VPS29-202ENST00000447578 A0A096LPE4 126 aa7.4□□□□□ -1.22
VPS29-202ENST00000447578 A0A1W2PP55 124 aa7.4□□□□□ -1.22
VPS29-202ENST00000447578 A0A1W2PPZ6 126 aa7.4□□□□□ -1.22
VPS29-202ENST00000447578 PCDH1Q08174 1060 aa7.4□□□□□ -1.22
VPS29-202ENST00000447578 USPL1Q5W0Q7 1092 aa7.4□□□□□ -1.22
VPS29-202ENST00000447578 TCF12Q99081 682 aa7.4□□□□□ -1.22
VPS29-202ENST00000447578 MAOBP27338 520 aa7.39□□□□□ -1.23
VPS29-202ENST00000447578 FBLN7Q53RD9 439 aa7.39□□□□□ -1.23
VPS29-202ENST00000447578 PAOXQ6QHF9 649 aa7.39□□□□□ -1.23
VPS29-202ENST00000447578 CCNJLQ8IV13 435 aa7.39□□□□□ -1.23
VPS29-202ENST00000447578 GIMAP7Q8NHV1 300 aa7.39□□□□□ -1.23
VPS29-202ENST00000447578 LIN7BQ9HAP6 207 aa7.39□□□□□ -1.23
VPS29-202ENST00000447578 ADGRE2Q9UHX3 823 aa7.39□□□□□ -1.23
VPS29-202ENST00000447578 ECEL1O95672 775 aa7.38□□□□□ -1.23
VPS29-202ENST00000447578 ADH5P11766 374 aa7.38□□□□□ -1.23
VPS29-202ENST00000447578 FOSL1P15407 271 aa7.38□□□□□ -1.23
VPS29-202ENST00000447578 MSMPQ1L6U9 139 aa7.38□□□□□ -1.23
VPS29-202ENST00000447578 GALNT12Q8IXK2 581 aa7.38□□□□□ -1.23
VPS29-202ENST00000447578 ABI1Q8IZP0 508 aa7.38□□□□□ -1.23
VPS29-202ENST00000447578 POU5F2Q8N7G0 328 aa7.38□□□□□ -1.23
VPS29-202ENST00000447578 TBC1D32Q96NH3 1257 aa7.38□□□□□ -1.23
VPS29-202ENST00000447578 CLEC4MQ9H2X3 399 aaPredicted RBP7.38□□□□□ -1.23
VPS29-202ENST00000447578 ACTL7BQ9Y614 415 aa7.38□□□□□ -1.23
VPS29-202ENST00000447578 FAM170BA6NMN3 283 aa7.37□□□□□ -1.23
VPS29-202ENST00000447578 TRIM26Q12899 539 aaPredicted RBP7.37□□□□□ -1.23
VPS29-202ENST00000447578 ECM1Q16610 540 aa7.37□□□□□ -1.23
VPS29-202ENST00000447578 LCE5AQ5TCM9 118 aa7.37□□□□□ -1.23
VPS29-202ENST00000447578 PRKAG2Q9UGJ0 569 aa7.37□□□□□ -1.23
VPS29-202ENST00000447578 ICMTO60725 284 aa7.36□□□□□ -1.23
VPS29-202ENST00000447578 NFICP08651 508 aa7.36□□□□□ -1.23
VPS29-202ENST00000447578 RAB6AP20340 208 aa7.36□□□□□ -1.23
VPS29-202ENST00000447578 SERPINB4P48594 390 aa7.36□□□□□ -1.23
VPS29-202ENST00000447578 POU4F3Q15319 338 aa7.36□□□□□ -1.23
VPS29-202ENST00000447578 AKAP4Q5JQC9 854 aa7.36□□□□□ -1.23
VPS29-202ENST00000447578 NFXL1Q6ZNB6 911 aa7.36□□□□□ -1.23
VPS29-202ENST00000447578 ZAR1Q86SH2 424 aa7.36□□□□□ -1.23
VPS29-202ENST00000447578 EZH1Q92800 747 aaPredicted RBP7.36□□□□□ -1.23
VPS29-202ENST00000447578 GATA6Q92908 595 aa7.36□□□□□ -1.23
VPS29-202ENST00000447578 CCDC39Q9UFE4 941 aa7.36□□□□□ -1.23
VPS29-202ENST00000447578 CYP26A1O43174 497 aa7.35□□□□□ -1.23
VPS29-202ENST00000447578 ORC1Q13415 861 aa7.35□□□□□ -1.23
VPS29-202ENST00000447578 DYMQ7RTS9 669 aa7.35□□□□□ -1.23
VPS29-202ENST00000447578 TRIM56Q9BRZ2 755 aaKnown RBP7.35□□□□□ -1.23
VPS29-202ENST00000447578 BRPF3Q9ULD4 1205 aa7.35□□□□□ -1.23
VPS29-202ENST00000447578 ANGEL1Q9UNK9 670 aaKnown RBP7.35□□□□□ -1.23
VPS29-202ENST00000447578 H3BRB1 525 aa7.34□□□□□ -1.23
VPS29-202ENST00000447578 CYP11A1P05108 521 aa7.34□□□□□ -1.23
VPS29-202ENST00000447578 TUT1Q9H6E5 874 aaKnown RBP7.34□□□□□ -1.23
VPS29-202ENST00000447578 RAD18Q9NS91 495 aa7.34□□□□□ -1.23
VPS29-202ENST00000447578 FAM105AQ9NUU6 356 aa7.34□□□□□ -1.23
VPS29-202ENST00000447578 METTL22Q9BUU2 404 aaPredicted RBP7.33□□□□□ -1.24
VPS29-202ENST00000447578 YIPF2Q9BWQ6 316 aa7.33□□□□□ -1.24
VPS29-202ENST00000447578 EHD4Q9H223 541 aa7.33□□□□□ -1.24
VPS29-202ENST00000447578 SEMA6CQ9H3T2 930 aa7.33□□□□□ -1.24
VPS29-202ENST00000447578 LGR6Q9HBX8 967 aa7.33□□□□□ -1.24
VPS29-202ENST00000447578 NPHS2Q9NP85 383 aa7.33□□□□□ -1.24
VPS29-202ENST00000447578 AP4E1Q9UPM8 1137 aa7.33□□□□□ -1.24
VPS29-202ENST00000447578 DYNC1LI2O43237 492 aaPredicted RBP7.32□□□□□ -1.24
VPS29-202ENST00000447578 PRNPP04156 253 aa7.32□□□□□ -1.24
VPS29-202ENST00000447578 ARHGAP4P98171 946 aa7.32□□□□□ -1.24
VPS29-202ENST00000447578 CPSF6Q16630 551 aaKnown RBP eCLIP7.32□□□□□ -1.24
VPS29-202ENST00000447578 KIAA0319Q5VV43 1072 aa7.32□□□□□ -1.24
VPS29-202ENST00000447578 GLYCTKQ8IVS8 523 aa7.32□□□□□ -1.24
VPS29-202ENST00000447578 CORO1BQ9BR76 489 aa7.32□□□□□ -1.24
VPS29-202ENST00000447578 ZNF576Q9H609 170 aa7.32□□□□□ -1.24
VPS29-202ENST00000447578 LRRC4CQ9HCJ2 640 aa7.32□□□□□ -1.24
VPS29-202ENST00000447578 EGFL7Q9UHF1 273 aa7.32□□□□□ -1.24
VPS29-202ENST00000447578 EIF4EBP3O60516 100 aaPredicted RBP7.31□□□□□ -1.24
VPS29-202ENST00000447578 B3GALT4O96024 378 aa7.31□□□□□ -1.24
VPS29-202ENST00000447578 ASPAP45381 313 aa7.31□□□□□ -1.24
VPS29-202ENST00000447578 COL19A1Q14993 1142 aa7.31□□□□□ -1.24
VPS29-202ENST00000447578 ZNF765Q7L2R6 523 aa7.31□□□□□ -1.24
VPS29-202ENST00000447578 TP53INP2Q8IXH6 220 aa7.31□□□□□ -1.24
VPS29-202ENST00000447578 ACSS3Q9H6R3 686 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms