RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 CHMP3Q9Y3E7 222 aa15.14■□□□□ 0.01
PTPRF-208ENST00000437607 ZSWIM8A7E2V4 1837 aa15.14■□□□□ 0.01
PTPRF-208ENST00000437607 AAMPQ13685 434 aa15.13■□□□□ 0.01
PTPRF-208ENST00000437607 NBPF12Q5TAG4 269 aaPredicted RBP15.13■□□□□ 0.01
PTPRF-208ENST00000437607 ZNF804AQ7Z570 1209 aa15.13■□□□□ 0.01
PTPRF-208ENST00000437607 WNK4Q96J92 1243 aa15.13■□□□□ 0.01
PTPRF-208ENST00000437607 PPP2R3BQ9Y5P8 575 aa15.13■□□□□ 0.01
PTPRF-208ENST00000437607 MANSC4A6NHS7 340 aaPredicted RBP15.12■□□□□ 0.01
PTPRF-208ENST00000437607 IGF2BP3O00425 579 aaKnown RBP eCLIP15.12■□□□□ 0.01
PTPRF-208ENST00000437607 GJA5P36382 358 aa15.12■□□□□ 0.01
PTPRF-208ENST00000437607 IFNL1Q8IU54 200 aa15.12■□□□□ 0.01
PTPRF-208ENST00000437607 SLC10A4Q96EP9 437 aa15.12■□□□□ 0.01
PTPRF-208ENST00000437607 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.12■□□□□ 0.01
PTPRF-208ENST00000437607 FAM205AQ6ZU69 1335 aa15.12■□□□□ 0.01
PTPRF-208ENST00000437607 GRM8O00222 908 aa15.11■□□□□ 0.01
PTPRF-208ENST00000437607 USP2O75604 605 aaPredicted RBP15.11■□□□□ 0.01
PTPRF-208ENST00000437607 ALDH1L1O75891 902 aa15.11■□□□□ 0.01
PTPRF-208ENST00000437607 ZBTB48P10074 688 aaPredicted RBP15.11■□□□□ 0.01
PTPRF-208ENST00000437607 LDHAL6AQ6ZMR3 332 aa15.11■□□□□ 0.01
PTPRF-208ENST00000437607 KAZALD1Q96I82 304 aa15.11■□□□□ 0.01
PTPRF-208ENST00000437607 AK9Q5TCS8 1911 aa15.11■□□□□ 0.01
PTPRF-208ENST00000437607 ALDH1A1P00352 501 aa15.1■□□□□ 0.01
PTPRF-208ENST00000437607 INHBEP58166 350 aa15.1■□□□□ 0.01
PTPRF-208ENST00000437607 CCDC57Q2TAC2 916 aa15.1■□□□□ 0.01
PTPRF-208ENST00000437607 PRPF38BQ5VTL8 546 aaKnown RBP15.1■□□□□ 0.01
PTPRF-208ENST00000437607 PUS3Q9BZE2 481 aaKnown RBP15.1■□□□□ 0.01
PTPRF-208ENST00000437607 VEZTQ9HBM0 779 aa15.1■□□□□ 0.01
PTPRF-208ENST00000437607 PPP4R2Q9NY27 417 aa15.1■□□□□ 0.01
PTPRF-208ENST00000437607 UNCXA6NJT0 531 aa15.09■□□□□ 0.01
PTPRF-208ENST00000437607 MYO1BO43795 1136 aa15.09■□□□□ 0.01
PTPRF-208ENST00000437607 PPP1R12BO60237 982 aaPredicted RBP15.09■□□□□ 0.01
PTPRF-208ENST00000437607 RASA3Q14644 834 aa15.09■□□□□ 0.01
PTPRF-208ENST00000437607 SUPT20HL1Q3ZLR7 823 aa15.09■□□□□ 0.01
PTPRF-208ENST00000437607 CDAN1Q8IWY9 1227 aa15.09■□□□□ 0.01
PTPRF-208ENST00000437607 TDRD7Q8NHU6 1098 aaKnown RBP15.09■□□□□ 0.01
PTPRF-208ENST00000437607 CNNM1Q9NRU3 951 aa15.09■□□□□ 0.01
PTPRF-208ENST00000437607 GNAI3P08754 354 aa15.08■□□□□ 0
PTPRF-208ENST00000437607 GYG1P46976 350 aa15.08■□□□□ 0
PTPRF-208ENST00000437607 CAP1Q01518 475 aa15.08■□□□□ 0
PTPRF-208ENST00000437607 GRIK5Q16478 980 aa15.08■□□□□ 0
PTPRF-208ENST00000437607 SPDYE2Q495Y8 402 aa15.08■□□□□ 0
PTPRF-208ENST00000437607 TAF7LQ5H9L4 462 aa15.08■□□□□ 0
PTPRF-208ENST00000437607 OTOP1Q7RTM1 612 aa15.08■□□□□ 0
PTPRF-208ENST00000437607 SUCLG2Q96I99 432 aa15.08■□□□□ 0
PTPRF-208ENST00000437607 FAM84BQ96KN1 310 aaPredicted RBP15.08■□□□□ 0
PTPRF-208ENST00000437607 TEPSINQ96N21 525 aa15.08■□□□□ 0
PTPRF-208ENST00000437607 MEIS3Q99687 375 aa15.08■□□□□ 0
PTPRF-208ENST00000437607 PTPN18Q99952 460 aa15.08■□□□□ 0
PTPRF-208ENST00000437607 ZNF70Q9UC06 446 aaPredicted RBP15.08■□□□□ 0
PTPRF-208ENST00000437607 UBTFL1P0CB47 393 aaPredicted RBP15.07■□□□□ 0
PTPRF-208ENST00000437607 RBM5P52756 815 aaKnown RBP eCLIP15.07■□□□□ 0
PTPRF-208ENST00000437607 UBE4AQ14139 1066 aa15.07■□□□□ 0
PTPRF-208ENST00000437607 MFSD14BQ5SR56 506 aa15.07■□□□□ 0
PTPRF-208ENST00000437607 CCDC136Q96JN2 1154 aa15.07■□□□□ 0
PTPRF-208ENST00000437607 TDRD3Q9H7E2 651 aaKnown RBP15.07■□□□□ 0
PTPRF-208ENST00000437607 C9orf78Q9NZ63 289 aaPredicted RBP15.07■□□□□ 0
PTPRF-208ENST00000437607 TTF2Q9UNY4 1162 aaKnown RBP15.07■□□□□ 0
PTPRF-208ENST00000437607 TRIM17Q9Y577 477 aa15.07■□□□□ 0
PTPRF-208ENST00000437607 TESPA1A2RU30 521 aaPredicted RBP15.06■□□□□ 0
PTPRF-208ENST00000437607 NBPF7P0C2Y1 421 aaPredicted RBP15.06■□□□□ 0
PTPRF-208ENST00000437607 IREB2P48200 963 aaKnown RBP15.06■□□□□ 0
PTPRF-208ENST00000437607 CRHR2Q13324 411 aa15.06■□□□□ 0
PTPRF-208ENST00000437607 ANKRD13AQ8IZ07 590 aa15.06■□□□□ 0
PTPRF-208ENST00000437607 SERPINA10Q9UK55 444 aa15.06■□□□□ 0
PTPRF-208ENST00000437607 RIPOR2Q9Y4F9 1068 aa15.06■□□□□ 0
PTPRF-208ENST00000437607 UTYO14607 1347 aa15.06■□□□□ 0
PTPRF-208ENST00000437607 ZBTB7BO15156 539 aaPredicted RBP15.05■□□□□ -0
PTPRF-208ENST00000437607 HIBADHP31937 336 aaKnown RBP15.05■□□□□ -0
PTPRF-208ENST00000437607 CD99L2Q8TCZ2 262 aa15.05■□□□□ -0
PTPRF-208ENST00000437607 CNKSR2Q8WXI2 1034 aa15.05■□□□□ -0
PTPRF-208ENST00000437607 ELP3Q9H9T3 547 aa15.05■□□□□ -0
PTPRF-208ENST00000437607 ZBTB40Q9NUA8 1239 aa15.05■□□□□ -0
PTPRF-208ENST00000437607 HDAC5Q9UQL6 1122 aa15.05■□□□□ -0
PTPRF-208ENST00000437607 MGAMO43451 1857 aa15.05■□□□□ -0
PTPRF-208ENST00000437607 POTEFA5A3E0 1075 aa15.04■□□□□ -0
PTPRF-208ENST00000437607 RABL6Q3YEC7 729 aaPredicted RBP15.04■□□□□ -0
PTPRF-208ENST00000437607 LRRC24Q50LG9 513 aa15.04■□□□□ -0
PTPRF-208ENST00000437607 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.04■□□□□ -0
PTPRF-208ENST00000437607 OPTNQ96CV9 577 aa15.04■□□□□ -0
PTPRF-208ENST00000437607 MS4A4AQ96JQ5 239 aa15.04■□□□□ -0
PTPRF-208ENST00000437607 TMEM39BQ9GZU3 492 aa15.04■□□□□ -0
PTPRF-208ENST00000437607 C1orf115Q9H7X2 142 aa15.04■□□□□ -0
PTPRF-208ENST00000437607 PCDH10Q9P2E7 1040 aa15.04■□□□□ -0
PTPRF-208ENST00000437607 IQSEC3Q9UPP2 1182 aaPredicted RBP15.04■□□□□ -0
PTPRF-208ENST00000437607 PTPN22Q9Y2R2 807 aa15.04■□□□□ -0
PTPRF-208ENST00000437607 MYH2Q9UKX2 1941 aa15.04■□□□□ -0
PTPRF-208ENST00000437607 TCP10L2B9ZVM9 353 aa15.03■□□□□ -0
PTPRF-208ENST00000437607 GNAI2P04899 355 aa15.03■□□□□ -0
PTPRF-208ENST00000437607 CRKP46108 304 aa15.03■□□□□ -0
PTPRF-208ENST00000437607 TNFAIP1Q13829 316 aa15.03■□□□□ -0
PTPRF-208ENST00000437607 FBXO33Q7Z6M2 555 aa15.03■□□□□ -0
PTPRF-208ENST00000437607 ANKRD44Q8N8A2 993 aa15.03■□□□□ -0
PTPRF-208ENST00000437607 VGLL2Q8N8G2 317 aa15.03■□□□□ -0
PTPRF-208ENST00000437607 BICC1Q9H694 974 aaKnown RBP15.03■□□□□ -0
PTPRF-208ENST00000437607 PTPRFP10586 1907 aa15.02■□□□□ -0
PTPRF-208ENST00000437607 MROH5Q6ZUA9 1318 aa15.02■□□□□ -0
PTPRF-208ENST00000437607 DOCK2Q92608 1830 aa15.02■□□□□ -0
PTPRF-208ENST00000437607 B4GALNT3Q6L9W6 998 aa15.02■□□□□ -0
PTPRF-208ENST00000437607 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.02■□□□□ -0
PTPRF-208ENST00000437607 BRI3BPQ8WY22 251 aa15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms