RNA–Protein interactions for RNA: ENST00000411220.1

RNU4-88P-201, Transcript of RNA, U4 small nuclear 88, pseudogene, humanhuman

BASIC

Gene RNU4-88P, Length 86 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-88P-201ENST00000411220 CDPF1Q6NVV7 123 aa0.48□□□□□ -2.33
RNU4-88P-201ENST00000411220 CNKSR3Q6P9H4 555 aa0.48□□□□□ -2.33
RNU4-88P-201ENST00000411220 MRGPRGQ86SM5 289 aa0.48□□□□□ -2.33
RNU4-88P-201ENST00000411220 NUTM1Q86Y26 1132 aa0.48□□□□□ -2.33
RNU4-88P-201ENST00000411220 IRF2BP1Q8IU81 584 aa0.48□□□□□ -2.33
RNU4-88P-201ENST00000411220 HS6ST3Q8IZP7 471 aa0.48□□□□□ -2.33
RNU4-88P-201ENST00000411220 DDX1Q92499 740 aaKnown RBP0.48□□□□□ -2.33
RNU4-88P-201ENST00000411220 EZH1Q92800 747 aaPredicted RBP0.48□□□□□ -2.33
RNU4-88P-201ENST00000411220 TRAK2O60296 914 aa0.47□□□□□ -2.33
RNU4-88P-201ENST00000411220 KCNQ4P56696 695 aa0.47□□□□□ -2.33
RNU4-88P-201ENST00000411220 PPP2R2DQ66LE6 453 aa0.47□□□□□ -2.33
RNU4-88P-201ENST00000411220 OGFOD3Q6PK18 319 aa0.47□□□□□ -2.33
RNU4-88P-201ENST00000411220 PCSK4Q6UW60 755 aa0.47□□□□□ -2.33
RNU4-88P-201ENST00000411220 PALM2Q8IXS6 379 aa0.47□□□□□ -2.33
RNU4-88P-201ENST00000411220 NEU4Q8WWR8 484 aaPredicted RBP0.47□□□□□ -2.33
RNU4-88P-201ENST00000411220 ASB11Q8WXH4 323 aa0.47□□□□□ -2.33
RNU4-88P-201ENST00000411220 PHOX2BQ99453 314 aa0.47□□□□□ -2.33
RNU4-88P-201ENST00000411220 NIFKQ9BYG3 293 aaKnown RBP0.47□□□□□ -2.33
RNU4-88P-201ENST00000411220 ZNF112Q9UJU3 913 aa0.47□□□□□ -2.33
RNU4-88P-201ENST00000411220 PER1O15534 1290 aaPredicted RBP0.46□□□□□ -2.34
RNU4-88P-201ENST00000411220 ZFPL1O95159 310 aa0.46□□□□□ -2.34
RNU4-88P-201ENST00000411220 CD38P28907 300 aa0.46□□□□□ -2.34
RNU4-88P-201ENST00000411220 LRRC69Q6ZNQ3 347 aa0.46□□□□□ -2.34
RNU4-88P-201ENST00000411220 OSBPL3Q9H4L5 887 aa0.46□□□□□ -2.34
RNU4-88P-201ENST00000411220 PPME1Q9Y570 386 aa0.46□□□□□ -2.34
RNU4-88P-201ENST00000411220 CFAP99D6REC4 459 aa0.45□□□□□ -2.34
RNU4-88P-201ENST00000411220 NARSO43776 548 aaKnown RBP0.45□□□□□ -2.34
RNU4-88P-201ENST00000411220 FKBP8Q14318 412 aa0.45□□□□□ -2.34
RNU4-88P-201ENST00000411220 NKX1-1Q15270 411 aaPredicted RBP0.45□□□□□ -2.34
RNU4-88P-201ENST00000411220 RUSC1-AS1Q66K80 236 aa0.45□□□□□ -2.34
RNU4-88P-201ENST00000411220 SPEM1Q8N4L4 309 aa0.45□□□□□ -2.34
RNU4-88P-201ENST00000411220 C12orf50Q8NA57 414 aaPredicted RBP0.45□□□□□ -2.34
RNU4-88P-201ENST00000411220 ADAM32Q8TC27 787 aa0.45□□□□□ -2.34
RNU4-88P-201ENST00000411220 CCDC120Q96HB5 630 aa0.45□□□□□ -2.34
RNU4-88P-201ENST00000411220 MKNK2Q9HBH9 465 aa0.45□□□□□ -2.34
RNU4-88P-201ENST00000411220 BRD7Q9NPI1 651 aa0.45□□□□□ -2.34
RNU4-88P-201ENST00000411220 MDFICQ9P1T7 246 aa0.45□□□□□ -2.34
RNU4-88P-201ENST00000411220 ADAM29Q9UKF5 820 aa0.45□□□□□ -2.34
RNU4-88P-201ENST00000411220 TM4SF5O14894 197 aa0.44□□□□□ -2.34
RNU4-88P-201ENST00000411220 RGL2O15211 777 aa0.44□□□□□ -2.34
RNU4-88P-201ENST00000411220 PLATP00750 562 aa0.44□□□□□ -2.34
RNU4-88P-201ENST00000411220 CEACAM5P06731 702 aa0.44□□□□□ -2.34
RNU4-88P-201ENST00000411220 ADRA1BP35368 520 aa0.44□□□□□ -2.34
RNU4-88P-201ENST00000411220 FOXE3Q13461 319 aa0.44□□□□□ -2.34
RNU4-88P-201ENST00000411220 MAP7Q14244 749 aa0.44□□□□□ -2.34
RNU4-88P-201ENST00000411220 MIIPQ5JXC2 388 aa0.44□□□□□ -2.34
RNU4-88P-201ENST00000411220 SPDYAQ5MJ70 313 aa0.44□□□□□ -2.34
RNU4-88P-201ENST00000411220 FAM129CQ86XR2 697 aa0.44□□□□□ -2.34
RNU4-88P-201ENST00000411220 DZIP3Q86Y13 1208 aaKnown RBP0.44□□□□□ -2.34
RNU4-88P-201ENST00000411220 SMRP1Q8NCR6 262 aa0.44□□□□□ -2.34
RNU4-88P-201ENST00000411220 SMG7Q92540 1137 aaKnown RBP0.44□□□□□ -2.34
RNU4-88P-201ENST00000411220 ESF1Q9H501 851 aaKnown RBP0.44□□□□□ -2.34
RNU4-88P-201ENST00000411220 SNX11Q9Y5W9 270 aa0.44□□□□□ -2.34
RNU4-88P-201ENST00000411220 LINC01387J3KSC0 135 aa0.43□□□□□ -2.34
RNU4-88P-201ENST00000411220 TRIM38O00635 465 aa0.43□□□□□ -2.34
RNU4-88P-201ENST00000411220 DDX3YO15523 660 aaKnown RBP0.43□□□□□ -2.34
RNU4-88P-201ENST00000411220 AOC2O75106 756 aa0.43□□□□□ -2.34
RNU4-88P-201ENST00000411220 SSTR3P32745 418 aaPredicted RBP0.43□□□□□ -2.34
RNU4-88P-201ENST00000411220 SCTRP47872 440 aa0.43□□□□□ -2.34
RNU4-88P-201ENST00000411220 SMTNP53814 917 aa0.43□□□□□ -2.34
RNU4-88P-201ENST00000411220 TLR1Q15399 786 aa0.43□□□□□ -2.34
RNU4-88P-201ENST00000411220 PRIMA1Q86XR5 153 aa0.43□□□□□ -2.34
RNU4-88P-201ENST00000411220 CCDC125Q86Z20 511 aa0.43□□□□□ -2.34
RNU4-88P-201ENST00000411220 CACTIN-AS1Q8N1I8 211 aa0.43□□□□□ -2.34
RNU4-88P-201ENST00000411220 PWWP2AQ96N64 755 aa0.43□□□□□ -2.34
RNU4-88P-201ENST00000411220 SLC6A17Q9H1V8 727 aa0.43□□□□□ -2.34
RNU4-88P-201ENST00000411220 ZNF552Q9H707 407 aaPredicted RBP0.43□□□□□ -2.34
RNU4-88P-201ENST00000411220 NEUROD4Q9HD90 331 aa0.43□□□□□ -2.34
RNU4-88P-201ENST00000411220 ZNF580Q9UK33 172 aa0.43□□□□□ -2.34
RNU4-88P-201ENST00000411220 KRT86O43790 486 aa0.42□□□□□ -2.34
RNU4-88P-201ENST00000411220 TIAF1O95411 115 aa0.42□□□□□ -2.34
RNU4-88P-201ENST00000411220 HYAL1Q12794 435 aa0.42□□□□□ -2.34
RNU4-88P-201ENST00000411220 HIC1Q14526 733 aa0.42□□□□□ -2.34
RNU4-88P-201ENST00000411220 KRT81Q14533 505 aa0.42□□□□□ -2.34
RNU4-88P-201ENST00000411220 TBC1D10BQ4KMP7 808 aaPredicted RBP0.42□□□□□ -2.34
RNU4-88P-201ENST00000411220 ESCO1Q5FWF5 840 aa0.42□□□□□ -2.34
RNU4-88P-201ENST00000411220 ARHGAP27Q6ZUM4 889 aa0.42□□□□□ -2.34
RNU4-88P-201ENST00000411220 GAREM2Q75VX8 874 aa0.42□□□□□ -2.34
RNU4-88P-201ENST00000411220 ZNF843Q8N446 348 aa0.42□□□□□ -2.34
RNU4-88P-201ENST00000411220 TRPM4Q8TD43 1214 aa0.42□□□□□ -2.34
RNU4-88P-201ENST00000411220 MYLIPQ8WY64 445 aa0.42□□□□□ -2.34
RNU4-88P-201ENST00000411220 PNMA5Q96PV4 448 aa0.42□□□□□ -2.34
RNU4-88P-201ENST00000411220 LNPKQ9C0E8 428 aa0.42□□□□□ -2.34
RNU4-88P-201ENST00000411220 RNF7Q9UBF6 113 aa0.42□□□□□ -2.34
RNU4-88P-201ENST00000411220 PLAGL2Q9UPG8 496 aa0.42□□□□□ -2.34
RNU4-88P-201ENST00000411220 GTF3C5Q9Y5Q8 519 aaPredicted RBP0.42□□□□□ -2.34
RNU4-88P-201ENST00000411220 GPR98Q8WXG9 6306 aa0.41□□□□□ -2.34
RNU4-88P-201ENST00000411220 FFAR3O14843 346 aa0.41□□□□□ -2.34
RNU4-88P-201ENST00000411220 N4BP3O15049 544 aa0.41□□□□□ -2.34
RNU4-88P-201ENST00000411220 RAMP2O60895 175 aa0.41□□□□□ -2.34
RNU4-88P-201ENST00000411220 NUDT3O95989 172 aa0.41□□□□□ -2.34
RNU4-88P-201ENST00000411220 EIF2AK2P19525 551 aaKnown RBP0.41□□□□□ -2.34
RNU4-88P-201ENST00000411220 EPHB3P54753 998 aa0.41□□□□□ -2.34
RNU4-88P-201ENST00000411220 COL10A1Q03692 680 aa0.41□□□□□ -2.34
RNU4-88P-201ENST00000411220 PTK2Q05397 1052 aa0.41□□□□□ -2.34
RNU4-88P-201ENST00000411220 PRR16Q569H4 304 aa0.41□□□□□ -2.34
RNU4-88P-201ENST00000411220 PLD4Q96BZ4 506 aa0.41□□□□□ -2.34
RNU4-88P-201ENST00000411220 CEP63Q96MT8 703 aa0.41□□□□□ -2.34
RNU4-88P-201ENST00000411220 OCSTAMPQ9BR26 566 aa0.41□□□□□ -2.34
RNU4-88P-201ENST00000411220 CARD10Q9BWT7 1032 aa0.41□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms