RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 CNTNAP1P78357 1384 aa8.56□□□□□ -1.04
LIMA1-202ENST00000394943 RAD50Q92878 1312 aa8.56□□□□□ -1.04
LIMA1-202ENST00000394943 KIF3CO14782 793 aa8.56□□□□□ -1.04
LIMA1-202ENST00000394943 RHBDL3P58872 404 aa8.56□□□□□ -1.04
LIMA1-202ENST00000394943 TTLL5Q6EMB2 1281 aa8.56□□□□□ -1.04
LIMA1-202ENST00000394943 APOBEC3HQ6NTF7 200 aaKnown RBP8.56□□□□□ -1.04
LIMA1-202ENST00000394943 GIMAP6Q6P9H5 292 aa8.56□□□□□ -1.04
LIMA1-202ENST00000394943 EVI5LQ96CN4 794 aa8.56□□□□□ -1.04
LIMA1-202ENST00000394943 RIOK1Q9BRS2 568 aaKnown RBP8.56□□□□□ -1.04
LIMA1-202ENST00000394943 IQCA1LA6NCM1 817 aa8.56□□□□□ -1.04
LIMA1-202ENST00000394943 SMARCA5O60264 1052 aaPredicted RBP8.56□□□□□ -1.04
LIMA1-202ENST00000394943 IFIT2P09913 472 aaKnown RBP8.56□□□□□ -1.04
LIMA1-202ENST00000394943 KCNJ4P48050 445 aa8.56□□□□□ -1.04
LIMA1-202ENST00000394943 GRIK5Q16478 980 aa8.56□□□□□ -1.04
LIMA1-202ENST00000394943 SPDYE2Q495Y8 402 aa8.56□□□□□ -1.04
LIMA1-202ENST00000394943 OTUD7AQ8TE49 926 aaPredicted RBP8.56□□□□□ -1.04
LIMA1-202ENST00000394943 TAF1DQ9H5J8 278 aaPredicted RBP8.56□□□□□ -1.04
LIMA1-202ENST00000394943 DBNDD1Q9H9R9 158 aa8.56□□□□□ -1.04
LIMA1-202ENST00000394943 SPDYE2BA6NHP3 402 aa8.56□□□□□ -1.04
LIMA1-202ENST00000394943 SPDYE6P0CI01 402 aa8.56□□□□□ -1.04
LIMA1-202ENST00000394943 ZAP70P43403 619 aa8.56□□□□□ -1.04
LIMA1-202ENST00000394943 GSTO1P78417 241 aa8.56□□□□□ -1.04
LIMA1-202ENST00000394943 MAP3K11Q16584 847 aa8.56□□□□□ -1.04
LIMA1-202ENST00000394943 TTC39AQ5SRH9 613 aa8.56□□□□□ -1.04
LIMA1-202ENST00000394943 FAM83AQ86UY5 434 aa8.56□□□□□ -1.04
LIMA1-202ENST00000394943 C16orf71Q8IYS4 520 aaPredicted RBP8.56□□□□□ -1.04
LIMA1-202ENST00000394943 CCDC8Q9H0W5 538 aaPredicted RBP8.56□□□□□ -1.04
LIMA1-202ENST00000394943 PAG1Q9NWQ8 432 aa8.56□□□□□ -1.04
LIMA1-202ENST00000394943 A0A0G2JMZ2 1700 aa8.55□□□□□ -1.04
LIMA1-202ENST00000394943 PARP14Q460N5 1801 aa8.55□□□□□ -1.04
LIMA1-202ENST00000394943 GMPSP49915 693 aaPredicted RBP8.55□□□□□ -1.04
LIMA1-202ENST00000394943 ZMYM1Q5SVZ6 1142 aa8.55□□□□□ -1.04
LIMA1-202ENST00000394943 ANKRD45Q5TZF3 282 aa8.55□□□□□ -1.04
LIMA1-202ENST00000394943 RBM46Q8TBY0 533 aaKnown RBP8.55□□□□□ -1.04
LIMA1-202ENST00000394943 IL1RAPL2Q9NP60 686 aa8.55□□□□□ -1.04
LIMA1-202ENST00000394943 ALX1Q15699 326 aa8.55□□□□□ -1.04
LIMA1-202ENST00000394943 DOK7Q18PE1 504 aa8.55□□□□□ -1.04
LIMA1-202ENST00000394943 PNMA8AQ86V59 439 aaPredicted RBP8.55□□□□□ -1.04
LIMA1-202ENST00000394943 SLF2Q8IX21 1173 aa8.55□□□□□ -1.04
LIMA1-202ENST00000394943 DCAF8L1A6NGE4 600 aa8.55□□□□□ -1.04
LIMA1-202ENST00000394943 FGRP09769 529 aa8.55□□□□□ -1.04
LIMA1-202ENST00000394943 HIRAP54198 1017 aaPredicted RBP8.55□□□□□ -1.04
LIMA1-202ENST00000394943 KCNB2Q92953 911 aa8.55□□□□□ -1.04
LIMA1-202ENST00000394943 HELLSQ9NRZ9 838 aa8.55□□□□□ -1.04
LIMA1-202ENST00000394943 HACL1Q9UJ83 578 aa8.55□□□□□ -1.04
LIMA1-202ENST00000394943 FOXP2O15409 715 aa8.54□□□□□ -1.04
LIMA1-202ENST00000394943 TBC1D12O60347 775 aa8.54□□□□□ -1.04
LIMA1-202ENST00000394943 MECOMQ03112 1051 aa8.54□□□□□ -1.04
LIMA1-202ENST00000394943 DPY19L2Q6NUT2 758 aa8.54□□□□□ -1.04
LIMA1-202ENST00000394943 MYOZ2Q9NPC6 264 aa8.54□□□□□ -1.04
LIMA1-202ENST00000394943 PTPRFP10586 1907 aa8.54□□□□□ -1.04
LIMA1-202ENST00000394943 RIMBP2O15034 1052 aa8.54□□□□□ -1.04
LIMA1-202ENST00000394943 ENTPD3O75355 529 aa8.54□□□□□ -1.04
LIMA1-202ENST00000394943 NEFLP07196 543 aa8.54□□□□□ -1.04
LIMA1-202ENST00000394943 USP17L8P0C7I0 530 aa8.54□□□□□ -1.04
LIMA1-202ENST00000394943 GTF2IP78347 998 aa8.54□□□□□ -1.04
LIMA1-202ENST00000394943 FSTL1Q12841 308 aa8.54□□□□□ -1.04
LIMA1-202ENST00000394943 ZSCAN25Q6NSZ9 544 aa8.54□□□□□ -1.04
LIMA1-202ENST00000394943 DAGLAQ9Y4D2 1042 aa8.54□□□□□ -1.04
LIMA1-202ENST00000394943 MFSD14BQ5SR56 506 aa8.53□□□□□ -1.04
LIMA1-202ENST00000394943 LDHDQ86WU2 507 aa8.53□□□□□ -1.04
LIMA1-202ENST00000394943 MYH8P13535 1937 aa8.53□□□□□ -1.04
LIMA1-202ENST00000394943 HIP1O00291 1037 aa8.53□□□□□ -1.04
LIMA1-202ENST00000394943 CRKP46108 304 aa8.53□□□□□ -1.04
LIMA1-202ENST00000394943 OS9Q13438 667 aaPredicted RBP8.53□□□□□ -1.04
LIMA1-202ENST00000394943 PLIN4Q96Q06 1357 aa8.53□□□□□ -1.04
LIMA1-202ENST00000394943 NOVP48745 357 aa8.53□□□□□ -1.04
LIMA1-202ENST00000394943 SBK1Q52WX2 424 aa8.53□□□□□ -1.04
LIMA1-202ENST00000394943 ERICH6Q7L0X2 663 aa8.53□□□□□ -1.04
LIMA1-202ENST00000394943 HHIPL1Q96JK4 782 aa8.53□□□□□ -1.04
LIMA1-202ENST00000394943 TEPSINQ96N21 525 aa8.53□□□□□ -1.04
LIMA1-202ENST00000394943 EHD4Q9H223 541 aa8.53□□□□□ -1.04
LIMA1-202ENST00000394943 CNOT7Q9UIV1 285 aaKnown RBP8.53□□□□□ -1.04
LIMA1-202ENST00000394943 ZNF112Q9UJU3 913 aa8.53□□□□□ -1.04
LIMA1-202ENST00000394943 DDNO94850 711 aaPredicted RBP8.52□□□□□ -1.04
LIMA1-202ENST00000394943 LDHBP07195 334 aaKnown RBP8.52□□□□□ -1.04
LIMA1-202ENST00000394943 PRDX5P30044 214 aa8.52□□□□□ -1.04
LIMA1-202ENST00000394943 ADGRA1Q86SQ6 560 aa8.52□□□□□ -1.04
LIMA1-202ENST00000394943 ANTXR1Q9H6X2 564 aa8.52□□□□□ -1.04
LIMA1-202ENST00000394943 ANAPC4Q9UJX5 808 aa8.52□□□□□ -1.04
LIMA1-202ENST00000394943 POLR2AP24928 1970 aaKnown RBP8.52□□□□□ -1.05
LIMA1-202ENST00000394943 WNT10BO00744 389 aa8.52□□□□□ -1.05
LIMA1-202ENST00000394943 RNF113AO15541 343 aaKnown RBP8.52□□□□□ -1.05
LIMA1-202ENST00000394943 LDHCP07864 332 aa8.52□□□□□ -1.05
LIMA1-202ENST00000394943 PDE6AP16499 860 aa8.52□□□□□ -1.05
LIMA1-202ENST00000394943 LRRFIP1Q32MZ4 808 aaKnown RBP8.52□□□□□ -1.05
LIMA1-202ENST00000394943 KLHL34Q8N239 644 aa8.52□□□□□ -1.05
LIMA1-202ENST00000394943 APPBP2Q92624 585 aa8.52□□□□□ -1.05
LIMA1-202ENST00000394943 GINM1Q9NU53 330 aa8.52□□□□□ -1.05
LIMA1-202ENST00000394943 HDAC9Q9UKV0 1011 aa8.52□□□□□ -1.05
LIMA1-202ENST00000394943 ITGBL1O95965 494 aaPredicted RBP8.52□□□□□ -1.05
LIMA1-202ENST00000394943 VEGFAP15692 232 aaPredicted RBP8.52□□□□□ -1.05
LIMA1-202ENST00000394943 EPHX2P34913 555 aa8.52□□□□□ -1.05
LIMA1-202ENST00000394943 IRX6P78412 446 aaPredicted RBP8.52□□□□□ -1.05
LIMA1-202ENST00000394943 MICALL2Q8IY33 904 aa8.52□□□□□ -1.05
LIMA1-202ENST00000394943 WDHD1O75717 1129 aaPredicted RBP8.51□□□□□ -1.05
LIMA1-202ENST00000394943 PLCG2P16885 1265 aa8.51□□□□□ -1.05
LIMA1-202ENST00000394943 PI16Q6UXB8 463 aa8.51□□□□□ -1.05
LIMA1-202ENST00000394943 APOBEC3FQ8IUX4 373 aaKnown RBP8.51□□□□□ -1.05
LIMA1-202ENST00000394943 PIAS4Q8N2W9 510 aaPredicted RBP8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms