RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 SEPT12Q8IYM1 358 aa13.08□□□□□ -0.32
TCOF1-203ENST00000394269 LCORLQ8N3X6 602 aa13.08□□□□□ -0.32
TCOF1-203ENST00000394269 GJD4Q96KN9 370 aaPredicted RBP13.08□□□□□ -0.32
TCOF1-203ENST00000394269 STRBPQ96SI9 672 aaKnown RBP13.08□□□□□ -0.32
TCOF1-203ENST00000394269 BCL2L12Q9HB09 334 aa13.08□□□□□ -0.32
TCOF1-203ENST00000394269 RRAGDQ9NQL2 400 aaPredicted RBP13.08□□□□□ -0.32
TCOF1-203ENST00000394269 AFF2P51816 1311 aa13.08□□□□□ -0.32
TCOF1-203ENST00000394269 ARID4AP29374 1257 aaPredicted RBP13.08□□□□□ -0.32
TCOF1-203ENST00000394269 RPS8P62241 208 aaKnown RBP13.08□□□□□ -0.32
TCOF1-203ENST00000394269 UBE3CQ15386 1083 aa13.08□□□□□ -0.32
TCOF1-203ENST00000394269 SENP2Q9HC62 589 aa13.08□□□□□ -0.32
TCOF1-203ENST00000394269 MINPP1Q9UNW1 487 aa13.08□□□□□ -0.32
TCOF1-203ENST00000394269 BCL9LQ86UU0 1499 aa13.08□□□□□ -0.32
TCOF1-203ENST00000394269 ADD1P35611 737 aaKnown RBP13.07□□□□□ -0.32
TCOF1-203ENST00000394269 TRAPPC3LQ5T215 181 aa13.07□□□□□ -0.32
TCOF1-203ENST00000394269 IFNL3Q8IZI9 196 aa13.07□□□□□ -0.32
TCOF1-203ENST00000394269 GNL3LQ9NVN8 582 aaKnown RBP13.07□□□□□ -0.32
TCOF1-203ENST00000394269 ANKIB1Q9P2G1 1089 aa13.07□□□□□ -0.32
TCOF1-203ENST00000394269 TJP1Q07157 1748 aa13.07□□□□□ -0.32
TCOF1-203ENST00000394269 NUP188Q5SRE5 1749 aa13.07□□□□□ -0.32
TCOF1-203ENST00000394269 RPS6KA4O75676 772 aa13.07□□□□□ -0.32
TCOF1-203ENST00000394269 FNBP4Q8N3X1 1017 aaPredicted RBP13.07□□□□□ -0.32
TCOF1-203ENST00000394269 SLIT2O94813 1529 aa13.07□□□□□ -0.32
TCOF1-203ENST00000394269 SMIM22K7EJ46 135 aa13.07□□□□□ -0.32
TCOF1-203ENST00000394269 LIG1P18858 919 aa13.07□□□□□ -0.32
TCOF1-203ENST00000394269 CYB5R4Q7L1T6 521 aa13.07□□□□□ -0.32
TCOF1-203ENST00000394269 ALDH8A1Q9H2A2 487 aaPredicted RBP13.07□□□□□ -0.32
TCOF1-203ENST00000394269 ORC3Q9UBD5 711 aaPredicted RBP13.07□□□□□ -0.32
TCOF1-203ENST00000394269 ANTXR2P58335 489 aa13.06□□□□□ -0.32
TCOF1-203ENST00000394269 CCDC183Q5T5S1 534 aa13.06□□□□□ -0.32
TCOF1-203ENST00000394269 FBXW7Q969H0 707 aa13.06□□□□□ -0.32
TCOF1-203ENST00000394269 GPR101Q96P66 508 aaPredicted RBP13.06□□□□□ -0.32
TCOF1-203ENST00000394269 NARFQ9UHQ1 456 aa13.06□□□□□ -0.32
TCOF1-203ENST00000394269 PAPPAQ13219 1627 aa13.06□□□□□ -0.32
TCOF1-203ENST00000394269 IFIT3O14879 490 aaKnown RBP13.06□□□□□ -0.32
TCOF1-203ENST00000394269 PHKBQ93100 1093 aa13.06□□□□□ -0.32
TCOF1-203ENST00000394269 DOT1LQ8TEK3 1739 aa13.06□□□□□ -0.32
TCOF1-203ENST00000394269 TCHHQ07283 1943 aa13.06□□□□□ -0.32
TCOF1-203ENST00000394269 PRDM1O75626 825 aa13.06□□□□□ -0.32
TCOF1-203ENST00000394269 TMEM67Q5HYA8 995 aa13.06□□□□□ -0.32
TCOF1-203ENST00000394269 AIFM3Q96NN9 605 aa13.06□□□□□ -0.32
TCOF1-203ENST00000394269 DACT1Q9NYF0 836 aa13.06□□□□□ -0.32
TCOF1-203ENST00000394269 KIF3AQ9Y496 699 aa13.06□□□□□ -0.32
TCOF1-203ENST00000394269 PATL2C9JE40 543 aaKnown RBP13.05□□□□□ -0.32
TCOF1-203ENST00000394269 PTMAP06454 111 aaKnown RBP13.05□□□□□ -0.32
TCOF1-203ENST00000394269 CMTR1Q8N1G2 835 aaKnown RBP13.05□□□□□ -0.32
TCOF1-203ENST00000394269 NUP133Q8WUM0 1156 aa13.05□□□□□ -0.32
TCOF1-203ENST00000394269 NACAP1Q9BZK3 213 aa13.05□□□□□ -0.32
TCOF1-203ENST00000394269 CYP2D7A0A087X1C5 515 aa13.05□□□□□ -0.32
TCOF1-203ENST00000394269 TRIM37O94972 964 aa13.05□□□□□ -0.32
TCOF1-203ENST00000394269 DYNLL1P63167 89 aaKnown RBP13.05□□□□□ -0.32
TCOF1-203ENST00000394269 GNL2Q13823 731 aaKnown RBP13.05□□□□□ -0.32
TCOF1-203ENST00000394269 MFSD6Q6ZSS7 791 aa13.05□□□□□ -0.32
TCOF1-203ENST00000394269 ADGRA1Q86SQ6 560 aa13.05□□□□□ -0.32
TCOF1-203ENST00000394269 MB21D2Q8IYB1 491 aaPredicted RBP13.05□□□□□ -0.32
TCOF1-203ENST00000394269 LEO1Q8WVC0 666 aaPredicted RBP13.05□□□□□ -0.32
TCOF1-203ENST00000394269 SCAND2PQ9GZW5 306 aaPredicted RBP13.05□□□□□ -0.32
TCOF1-203ENST00000394269 NBPF3Q9H094 633 aa13.05□□□□□ -0.32
TCOF1-203ENST00000394269 LRP6O75581 1613 aa13.05□□□□□ -0.32
TCOF1-203ENST00000394269 ABCC12Q96J65 1359 aa13.04□□□□□ -0.32
TCOF1-203ENST00000394269 HMGN5P82970 282 aaKnown RBP13.04□□□□□ -0.32
TCOF1-203ENST00000394269 C8orf76Q96K31 380 aa13.04□□□□□ -0.32
TCOF1-203ENST00000394269 EPB41L4AQ9HCS5 686 aaPredicted RBP13.04□□□□□ -0.32
TCOF1-203ENST00000394269 BSDC1Q9NW68 430 aaPredicted RBP13.04□□□□□ -0.32
TCOF1-203ENST00000394269 NEDD4P46934 1319 aa13.04□□□□□ -0.32
TCOF1-203ENST00000394269 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.04□□□□□ -0.32
TCOF1-203ENST00000394269 TCRBV5S4A2TA0A5A2 114 aa13.04□□□□□ -0.32
TCOF1-203ENST00000394269 METAP2P50579 478 aaKnown RBP eCLIP13.04□□□□□ -0.32
TCOF1-203ENST00000394269 ZNF274Q96GC6 653 aaPredicted RBP13.04□□□□□ -0.32
TCOF1-203ENST00000394269 ZSWIM5Q9P217 1185 aa13.04□□□□□ -0.32
TCOF1-203ENST00000394269 MYH14Q7Z406 1995 aaKnown RBP13.04□□□□□ -0.32
TCOF1-203ENST00000394269 ME1P48163 572 aa13.04□□□□□ -0.32
TCOF1-203ENST00000394269 ZNF512BQ96KM6 892 aaPredicted RBP13.04□□□□□ -0.32
TCOF1-203ENST00000394269 FAM84BQ96KN1 310 aaPredicted RBP13.04□□□□□ -0.32
TCOF1-203ENST00000394269 NYXQ9GZU5 481 aa13.04□□□□□ -0.32
TCOF1-203ENST00000394269 ANGEL1Q9UNK9 670 aaKnown RBP13.04□□□□□ -0.32
TCOF1-203ENST00000394269 GSG1L2A8MUP6 293 aa13.03□□□□□ -0.32
TCOF1-203ENST00000394269 DHX16O60231 1041 aaKnown RBP13.03□□□□□ -0.32
TCOF1-203ENST00000394269 SF3A1Q15459 793 aaKnown RBP13.03□□□□□ -0.32
TCOF1-203ENST00000394269 TXNRD3Q86VQ6 643 aa13.03□□□□□ -0.32
TCOF1-203ENST00000394269 LRRC4BQ9NT99 713 aa13.03□□□□□ -0.32
TCOF1-203ENST00000394269 UBE2Q2LH0YL09 131 aa13.03□□□□□ -0.32
TCOF1-203ENST00000394269 FDPSP14324 419 aaKnown RBP13.03□□□□□ -0.32
TCOF1-203ENST00000394269 CCDC173Q0VFZ6 552 aa13.03□□□□□ -0.32
TCOF1-203ENST00000394269 NAA16Q6N069 864 aaPredicted RBP13.03□□□□□ -0.32
TCOF1-203ENST00000394269 MAGEB6P1A0A0J9YX57 407 aa13.03□□□□□ -0.32
TCOF1-203ENST00000394269 CCDC69A6NI79 296 aa13.03□□□□□ -0.32
TCOF1-203ENST00000394269 SF3B3Q15393 1217 aaKnown RBP13.03□□□□□ -0.32
TCOF1-203ENST00000394269 LLPHQ9BRT6 129 aaKnown RBP13.03□□□□□ -0.32
TCOF1-203ENST00000394269 USP25Q9UHP3 1055 aa13.03□□□□□ -0.32
TCOF1-203ENST00000394269 NUP98P52948 1817 aa13.02□□□□□ -0.32
TCOF1-203ENST00000394269 RANBP6O60518 1105 aaKnown RBP13.02□□□□□ -0.32
TCOF1-203ENST00000394269 RESTQ13127 1097 aa13.02□□□□□ -0.32
TCOF1-203ENST00000394269 TMEM87AQ8NBN3 555 aa13.02□□□□□ -0.32
TCOF1-203ENST00000394269 SMARCC2Q8TAQ2 1214 aa13.02□□□□□ -0.32
TCOF1-203ENST00000394269 USP28Q96RU2 1077 aa13.02□□□□□ -0.32
TCOF1-203ENST00000394269 TNMDQ9H2S6 317 aa13.02□□□□□ -0.32
TCOF1-203ENST00000394269 AATFQ9NY61 560 aaKnown RBP eCLIP13.02□□□□□ -0.32
TCOF1-203ENST00000394269 SLC12A7Q9Y666 1083 aa13.02□□□□□ -0.32
TCOF1-203ENST00000394269 PLCH1Q4KWH8 1693 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms