RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 GPAA1O43292 621 aa11.25□□□□□ -0.61
COL6A3-204ENST00000392003 ROBO1Q9Y6N7 1651 aa11.25□□□□□ -0.61
COL6A3-204ENST00000392003 ERVV-1B6SEH8 477 aa11.25□□□□□ -0.61
COL6A3-204ENST00000392003 SCARF1Q14162 830 aa11.25□□□□□ -0.61
COL6A3-204ENST00000392003 SLC9C2Q5TAH2 1124 aa11.25□□□□□ -0.61
COL6A3-204ENST00000392003 UTP14AQ9BVJ6 771 aaKnown RBP11.25□□□□□ -0.61
COL6A3-204ENST00000392003 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.25□□□□□ -0.61
COL6A3-204ENST00000392003 USP21Q9UK80 565 aa11.25□□□□□ -0.61
COL6A3-204ENST00000392003 ABCA3Q99758 1704 aa11.25□□□□□ -0.61
COL6A3-204ENST00000392003 KLF18A0A0U1RQI7 1052 aa11.25□□□□□ -0.61
COL6A3-204ENST00000392003 GUCY1B3Q02153 619 aa11.25□□□□□ -0.61
COL6A3-204ENST00000392003 A0A0G2JLW4 131 aa11.24□□□□□ -0.61
COL6A3-204ENST00000392003 GOLGA8BA8MQT2 603 aa11.24□□□□□ -0.61
COL6A3-204ENST00000392003 CTAGE5O15320 804 aa11.24□□□□□ -0.61
COL6A3-204ENST00000392003 TSC1Q92574 1164 aa11.24□□□□□ -0.61
COL6A3-204ENST00000392003 SHANK3Q9BYB0 1731 aa11.24□□□□□ -0.61
COL6A3-204ENST00000392003 TERF1P54274 439 aa11.24□□□□□ -0.61
COL6A3-204ENST00000392003 KCNQ4P56696 695 aa11.24□□□□□ -0.61
COL6A3-204ENST00000392003 SF3A1Q15459 793 aaKnown RBP11.24□□□□□ -0.61
COL6A3-204ENST00000392003 ANO6Q4KMQ2 910 aa11.24□□□□□ -0.61
COL6A3-204ENST00000392003 CPLX2Q6PUV4 134 aaKnown RBP11.24□□□□□ -0.61
COL6A3-204ENST00000392003 PI16Q6UXB8 463 aa11.24□□□□□ -0.61
COL6A3-204ENST00000392003 DRC7Q8IY82 874 aa11.24□□□□□ -0.61
COL6A3-204ENST00000392003 HELBQ8NG08 1087 aaPredicted RBP11.24□□□□□ -0.61
COL6A3-204ENST00000392003 C8orf76Q96K31 380 aa11.24□□□□□ -0.61
COL6A3-204ENST00000392003 PUS7LQ9H0K6 701 aaKnown RBP11.24□□□□□ -0.61
COL6A3-204ENST00000392003 KINO60870 393 aaKnown RBP11.23□□□□□ -0.61
COL6A3-204ENST00000392003 PDE8BO95263 885 aa11.23□□□□□ -0.61
COL6A3-204ENST00000392003 CTDNEP1O95476 244 aa11.23□□□□□ -0.61
COL6A3-204ENST00000392003 CAVIN2O95810 425 aa11.23□□□□□ -0.61
COL6A3-204ENST00000392003 SLC5A1P13866 664 aa11.23□□□□□ -0.61
COL6A3-204ENST00000392003 ME1P48163 572 aa11.23□□□□□ -0.61
COL6A3-204ENST00000392003 CCAR1Q8IX12 1150 aaKnown RBP11.23□□□□□ -0.61
COL6A3-204ENST00000392003 ZNF622Q969S3 477 aaKnown RBP eCLIP11.23□□□□□ -0.61
COL6A3-204ENST00000392003 PGBD1Q96JS3 809 aa11.23□□□□□ -0.61
COL6A3-204ENST00000392003 RCOR1Q9UKL0 485 aa11.23□□□□□ -0.61
COL6A3-204ENST00000392003 NHSL1Q5SYE7 1610 aa11.23□□□□□ -0.61
COL6A3-204ENST00000392003 NR1I2O75469 434 aa11.23□□□□□ -0.61
COL6A3-204ENST00000392003 MCAMP43121 646 aa11.23□□□□□ -0.61
COL6A3-204ENST00000392003 BARGINQ6ZT62 677 aa11.23□□□□□ -0.61
COL6A3-204ENST00000392003 FBXL16Q8N461 479 aa11.23□□□□□ -0.61
COL6A3-204ENST00000392003 ORC3Q9UBD5 711 aaPredicted RBP11.23□□□□□ -0.61
COL6A3-204ENST00000392003 MRVI1Q9Y6F6 885 aa11.23□□□□□ -0.61
COL6A3-204ENST00000392003 TOGARAM1Q9Y4F4 1720 aa11.23□□□□□ -0.61
COL6A3-204ENST00000392003 PPFIA3O75145 1194 aa11.23□□□□□ -0.61
COL6A3-204ENST00000392003 ADD2P35612 726 aa11.23□□□□□ -0.61
COL6A3-204ENST00000392003 PUM3Q15397 648 aaKnown RBP11.23□□□□□ -0.61
COL6A3-204ENST00000392003 ZNF512BQ96KM6 892 aaPredicted RBP11.23□□□□□ -0.61
COL6A3-204ENST00000392003 MROH5Q6ZUA9 1318 aa11.22□□□□□ -0.61
COL6A3-204ENST00000392003 SPDYE4A6NLX3 237 aa11.22□□□□□ -0.61
COL6A3-204ENST00000392003 GOLGA6L19H0YKK7 550 aa11.22□□□□□ -0.61
COL6A3-204ENST00000392003 IGHMBP2P38935 993 aaKnown RBP11.22□□□□□ -0.61
COL6A3-204ENST00000392003 ZRSR1Q15695 479 aaKnown RBP11.22□□□□□ -0.61
COL6A3-204ENST00000392003 FAM182BQ5T319 152 aa11.22□□□□□ -0.61
COL6A3-204ENST00000392003 LPIN2Q92539 896 aa11.22□□□□□ -0.61
COL6A3-204ENST00000392003 AIDAQ96BJ3 306 aa11.22□□□□□ -0.61
COL6A3-204ENST00000392003 CARMIL3Q8ND23 1372 aa11.22□□□□□ -0.61
COL6A3-204ENST00000392003 EIF5P55010 431 aaKnown RBP11.22□□□□□ -0.61
COL6A3-204ENST00000392003 UBE3CQ15386 1083 aa11.22□□□□□ -0.61
COL6A3-204ENST00000392003 PARP10Q53GL7 1025 aa11.22□□□□□ -0.61
COL6A3-204ENST00000392003 SYNE3Q6ZMZ3 975 aa11.22□□□□□ -0.61
COL6A3-204ENST00000392003 SPC24Q8NBT2 197 aa11.22□□□□□ -0.61
COL6A3-204ENST00000392003 AK7Q96M32 723 aa11.22□□□□□ -0.61
COL6A3-204ENST00000392003 DISP2A7MBM2 1401 aa11.22□□□□□ -0.61
COL6A3-204ENST00000392003 RIC1Q4ADV7 1423 aa11.22□□□□□ -0.61
COL6A3-204ENST00000392003 ZNF165P49910 485 aa11.22□□□□□ -0.61
COL6A3-204ENST00000392003 STK38Q15208 465 aa11.22□□□□□ -0.61
COL6A3-204ENST00000392003 CCDC102BQ68D86 513 aa11.22□□□□□ -0.61
COL6A3-204ENST00000392003 MB21D2Q8IYB1 491 aaPredicted RBP11.22□□□□□ -0.61
COL6A3-204ENST00000392003 USP28Q96RU2 1077 aa11.22□□□□□ -0.61
COL6A3-204ENST00000392003 TTC12Q9H892 705 aaPredicted RBP11.22□□□□□ -0.61
COL6A3-204ENST00000392003 COL14A1Q05707 1796 aaKnown RBP11.21□□□□□ -0.61
COL6A3-204ENST00000392003 CAPN2P17655 700 aa11.21□□□□□ -0.61
COL6A3-204ENST00000392003 EVCP57679 992 aa11.21□□□□□ -0.61
COL6A3-204ENST00000392003 MAP3K12Q12852 859 aa11.21□□□□□ -0.61
COL6A3-204ENST00000392003 ITPK1Q13572 414 aa11.21□□□□□ -0.61
COL6A3-204ENST00000392003 CCDC152Q4G0S7 254 aa11.21□□□□□ -0.61
COL6A3-204ENST00000392003 LUZP1Q86V48 1076 aa11.21□□□□□ -0.61
COL6A3-204ENST00000392003 TRIM5Q9C035 493 aa11.21□□□□□ -0.61
COL6A3-204ENST00000392003 WDR19Q8NEZ3 1342 aa11.21□□□□□ -0.61
COL6A3-204ENST00000392003 LAMA4Q16363 1823 aa11.21□□□□□ -0.61
COL6A3-204ENST00000392003 CDKL5O76039 1030 aa11.21□□□□□ -0.62
COL6A3-204ENST00000392003 PHKA1P46020 1223 aa11.21□□□□□ -0.62
COL6A3-204ENST00000392003 SUSD4Q5VX71 490 aa11.21□□□□□ -0.62
COL6A3-204ENST00000392003 FSIP1Q8NA03 581 aa11.21□□□□□ -0.62
COL6A3-204ENST00000392003 TRERF1Q96PN7 1200 aa11.21□□□□□ -0.62
COL6A3-204ENST00000392003 CBX8Q9HC52 389 aa11.21□□□□□ -0.62
COL6A3-204ENST00000392003 GPHNQ9NQX3 736 aaPredicted RBP11.21□□□□□ -0.62
COL6A3-204ENST00000392003 ZNF532Q9HCE3 1301 aa11.21□□□□□ -0.62
COL6A3-204ENST00000392003 GNL2Q13823 731 aaKnown RBP11.21□□□□□ -0.62
COL6A3-204ENST00000392003 INTS5Q6P9B9 1019 aaKnown RBP11.21□□□□□ -0.62
COL6A3-204ENST00000392003 NFXL1Q6ZNB6 911 aa11.21□□□□□ -0.62
COL6A3-204ENST00000392003 EGFL6Q8IUX8 553 aa11.21□□□□□ -0.62
COL6A3-204ENST00000392003 ZNF34Q8IZ26 560 aa11.21□□□□□ -0.62
COL6A3-204ENST00000392003 PIBF1Q8WXW3 757 aa11.21□□□□□ -0.62
COL6A3-204ENST00000392003 SALL1Q9NSC2 1324 aa11.2□□□□□ -0.62
COL6A3-204ENST00000392003 ZPR1O75312 459 aa11.2□□□□□ -0.62
COL6A3-204ENST00000392003 PDE6AP16499 860 aa11.2□□□□□ -0.62
COL6A3-204ENST00000392003 VPS72Q15906 364 aa11.2□□□□□ -0.62
COL6A3-204ENST00000392003 RBM43Q6ZSC3 357 aaKnown RBP11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms