RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 KCNQ4P56696 695 aa17.03■□□□□ 0.32
COL17A1-201ENST00000353479 FLAD1Q8NFF5 587 aa17.03■□□□□ 0.32
COL17A1-201ENST00000353479 DACT1Q9NYF0 836 aa17.03■□□□□ 0.32
COL17A1-201ENST00000353479 PATL2C9JE40 543 aaKnown RBP17.02■□□□□ 0.32
COL17A1-201ENST00000353479 DHX58Q96C10 678 aa17.02■□□□□ 0.32
COL17A1-201ENST00000353479 YEATS4O95619 227 aa17.02■□□□□ 0.32
COL17A1-201ENST00000353479 ATP5JP18859 108 aa17.02■□□□□ 0.32
COL17A1-201ENST00000353479 FAM114A1Q8IWE2 563 aa17.02■□□□□ 0.32
COL17A1-201ENST00000353479 TMEM87BQ96K49 555 aa17.02■□□□□ 0.32
COL17A1-201ENST00000353479 MAPKAPK5Q8IW41 473 aa17.02■□□□□ 0.32
COL17A1-201ENST00000353479 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.02■□□□□ 0.32
COL17A1-201ENST00000353479 ZSCAN12O43309 604 aa17.02■□□□□ 0.31
COL17A1-201ENST00000353479 TCP10Q12799 353 aa17.02■□□□□ 0.31
COL17A1-201ENST00000353479 PPIP5K2O43314 1243 aa17.01■□□□□ 0.31
COL17A1-201ENST00000353479 LRRC24Q50LG9 513 aa17.01■□□□□ 0.31
COL17A1-201ENST00000353479 DNAI2Q9GZS0 605 aa17.01■□□□□ 0.31
COL17A1-201ENST00000353479 RNF17Q9BXT8 1623 aaKnown RBP17.01■□□□□ 0.31
COL17A1-201ENST00000353479 USP8P40818 1118 aa17.01■□□□□ 0.31
COL17A1-201ENST00000353479 GYG1P46976 350 aa17.01■□□□□ 0.31
COL17A1-201ENST00000353479 GTF2IP78347 998 aa17.01■□□□□ 0.31
COL17A1-201ENST00000353479 SH2D4AQ9H788 454 aa17.01■□□□□ 0.31
COL17A1-201ENST00000353479 SPATA31A3Q5VYP0 1347 aa17.01■□□□□ 0.31
COL17A1-201ENST00000353479 NIM1KQ8IY84 436 aa17.01■□□□□ 0.31
COL17A1-201ENST00000353479 INTS4Q96HW7 963 aaKnown RBP17.01■□□□□ 0.31
COL17A1-201ENST00000353479 ASIC1P78348 528 aa17■□□□□ 0.31
COL17A1-201ENST00000353479 JAKMIP3Q5VZ66 844 aa17■□□□□ 0.31
COL17A1-201ENST00000353479 IQCEQ6IPM2 695 aa17■□□□□ 0.31
COL17A1-201ENST00000353479 TGFBRAP1Q8WUH2 860 aa17■□□□□ 0.31
COL17A1-201ENST00000353479 MMRN2Q9H8L6 949 aa17■□□□□ 0.31
COL17A1-201ENST00000353479 ADCY5O95622 1261 aa17■□□□□ 0.31
COL17A1-201ENST00000353479 FAM196AQ6ZSG2 479 aa17■□□□□ 0.31
COL17A1-201ENST00000353479 ZSCAN30Q86W11 494 aa17■□□□□ 0.31
COL17A1-201ENST00000353479 EAF2Q96CJ1 260 aaPredicted RBP17■□□□□ 0.31
COL17A1-201ENST00000353479 ZNF772Q68DY9 489 aaPredicted RBP17■□□□□ 0.31
COL17A1-201ENST00000353479 ANGEL1Q9UNK9 670 aaKnown RBP17■□□□□ 0.31
COL17A1-201ENST00000353479 RXRBP28702 533 aa17■□□□□ 0.31
COL17A1-201ENST00000353479 IL6STP40189 918 aaPredicted RBP17■□□□□ 0.31
COL17A1-201ENST00000353479 HSP90AA4PQ58FG1 418 aa17■□□□□ 0.31
COL17A1-201ENST00000353479 UNC5CLQ8IV45 518 aa17■□□□□ 0.31
COL17A1-201ENST00000353479 GREM2Q9H772 168 aa17■□□□□ 0.31
COL17A1-201ENST00000353479 NCOA5Q9HCD5 579 aaKnown RBP17■□□□□ 0.31
COL17A1-201ENST00000353479 ZYXQ15942 572 aaKnown RBP16.99■□□□□ 0.31
COL17A1-201ENST00000353479 AXDND1Q5T1B0 1012 aaPredicted RBP16.99■□□□□ 0.31
COL17A1-201ENST00000353479 PICK1Q9NRD5 415 aa16.99■□□□□ 0.31
COL17A1-201ENST00000353479 ADGRL3Q9HAR2 1447 aa16.99■□□□□ 0.31
COL17A1-201ENST00000353479 CDK12Q9NYV4 1490 aaPredicted RBP16.99■□□□□ 0.31
COL17A1-201ENST00000353479 PTPN14Q15678 1187 aa16.99■□□□□ 0.31
COL17A1-201ENST00000353479 KRT79Q5XKE5 535 aa16.99■□□□□ 0.31
COL17A1-201ENST00000353479 C2CD5Q86YS7 1000 aa16.99■□□□□ 0.31
COL17A1-201ENST00000353479 TBC1D22AQ8WUA7 517 aa16.99■□□□□ 0.31
COL17A1-201ENST00000353479 BRAPQ7Z569 592 aa16.99■□□□□ 0.31
COL17A1-201ENST00000353479 UNC13BO14795 1591 aa16.99■□□□□ 0.31
COL17A1-201ENST00000353479 BCAMP50895 628 aa16.99■□□□□ 0.31
COL17A1-201ENST00000353479 MFSD14BQ5SR56 506 aa16.99■□□□□ 0.31
COL17A1-201ENST00000353479 CDC42BPBQ9Y5S2 1711 aa16.99■□□□□ 0.31
COL17A1-201ENST00000353479 ABCA9Q8IUA7 1624 aa16.99■□□□□ 0.31
COL17A1-201ENST00000353479 ALKQ9UM73 1620 aa16.99■□□□□ 0.31
COL17A1-201ENST00000353479 SPHKAPQ2M3C7 1700 aa16.99■□□□□ 0.31
COL17A1-201ENST00000353479 CERS3Q8IU89 383 aa16.99■□□□□ 0.31
COL17A1-201ENST00000353479 N4BP3O15049 544 aa16.98■□□□□ 0.31
COL17A1-201ENST00000353479 SYT1P21579 422 aa16.98■□□□□ 0.31
COL17A1-201ENST00000353479 ANO6Q4KMQ2 910 aa16.98■□□□□ 0.31
COL17A1-201ENST00000353479 ZNF408Q9H9D4 720 aa16.98■□□□□ 0.31
COL17A1-201ENST00000353479 KIF5CO60282 957 aa16.98■□□□□ 0.31
COL17A1-201ENST00000353479 DNA2P51530 1060 aa16.98■□□□□ 0.31
COL17A1-201ENST00000353479 KRT27Q7Z3Y8 459 aa16.98■□□□□ 0.31
COL17A1-201ENST00000353479 ARHGEF10LQ9HCE6 1279 aa16.98■□□□□ 0.31
COL17A1-201ENST00000353479 BCS1LQ9Y276 419 aa16.98■□□□□ 0.31
COL17A1-201ENST00000353479 GIGYF2Q6Y7W6 1299 aaKnown RBP16.98■□□□□ 0.31
COL17A1-201ENST00000353479 DNAJC5Q9H3Z4 198 aa16.98■□□□□ 0.31
COL17A1-201ENST00000353479 CAVIN2O95810 425 aa16.98■□□□□ 0.31
COL17A1-201ENST00000353479 CHRNDQ07001 517 aa16.98■□□□□ 0.31
COL17A1-201ENST00000353479 NEBLO76041 1014 aa16.97■□□□□ 0.31
COL17A1-201ENST00000353479 MYL10Q9BUA6 226 aa16.97■□□□□ 0.31
COL17A1-201ENST00000353479 CDC42BPGQ6DT37 1551 aa16.97■□□□□ 0.31
COL17A1-201ENST00000353479 LRSAM1Q6UWE0 723 aa16.97■□□□□ 0.31
COL17A1-201ENST00000353479 TRMT1Q9NXH9 659 aaKnown RBP16.97■□□□□ 0.31
COL17A1-201ENST00000353479 V9GY48 417 aaPredicted RBP16.97■□□□□ 0.31
COL17A1-201ENST00000353479 PRKG1Q13976 671 aa16.97■□□□□ 0.31
COL17A1-201ENST00000353479 TTF2Q9UNY4 1162 aaKnown RBP16.97■□□□□ 0.31
COL17A1-201ENST00000353479 NLGN1Q8N2Q7 840 aa16.97■□□□□ 0.31
COL17A1-201ENST00000353479 PIGBQ92521 554 aa16.97■□□□□ 0.31
COL17A1-201ENST00000353479 PLIN2Q99541 437 aa16.97■□□□□ 0.31
COL17A1-201ENST00000353479 ZBTB21Q9ULJ3 1066 aa16.97■□□□□ 0.31
COL17A1-201ENST00000353479 B4DLN1 442 aa16.97■□□□□ 0.31
COL17A1-201ENST00000353479 ERLIN1O75477 346 aa16.97■□□□□ 0.31
COL17A1-201ENST00000353479 MRPL12P52815 198 aaKnown RBP16.97■□□□□ 0.31
COL17A1-201ENST00000353479 CCDC174Q6PII3 467 aa16.97■□□□□ 0.31
COL17A1-201ENST00000353479 GLI2P10070 1586 aa16.97■□□□□ 0.31
COL17A1-201ENST00000353479 CETN2P41208 172 aa16.96■□□□□ 0.31
COL17A1-201ENST00000353479 SETQ01105 290 aaPredicted RBP16.96■□□□□ 0.31
COL17A1-201ENST00000353479 LETM2Q2VYF4 491 aa16.96■□□□□ 0.31
COL17A1-201ENST00000353479 DTHD1Q6ZMT9 781 aa16.96■□□□□ 0.31
COL17A1-201ENST00000353479 DEXIO95424 95 aa16.96■□□□□ 0.31
COL17A1-201ENST00000353479 DLGAP5Q15398 846 aa16.96■□□□□ 0.31
COL17A1-201ENST00000353479 ZNF174Q15697 407 aa16.96■□□□□ 0.31
COL17A1-201ENST00000353479 GOLGA6L10A6NI86 522 aa16.96■□□□□ 0.31
COL17A1-201ENST00000353479 RBM10P98175 930 aaKnown RBP16.96■□□□□ 0.31
COL17A1-201ENST00000353479 SP4Q02446 784 aa16.96■□□□□ 0.31
COL17A1-201ENST00000353479 VTI1AQ96AJ9 217 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms