RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 STK38Q15208 465 aa11.71□□□□□ -0.53
LIG3-201ENST00000262327 NAA16Q6N069 864 aaPredicted RBP11.71□□□□□ -0.53
LIG3-201ENST00000262327 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.71□□□□□ -0.53
LIG3-201ENST00000262327 PLBD2Q8NHP8 589 aa11.71□□□□□ -0.53
LIG3-201ENST00000262327 AIFM3Q96NN9 605 aa11.71□□□□□ -0.53
LIG3-201ENST00000262327 DOT1LQ8TEK3 1739 aa11.71□□□□□ -0.53
LIG3-201ENST00000262327 ONECUT3O60422 494 aaPredicted RBP11.71□□□□□ -0.53
LIG3-201ENST00000262327 SMC2O95347 1197 aa11.71□□□□□ -0.53
LIG3-201ENST00000262327 MARCKSP29966 332 aaPredicted RBP11.71□□□□□ -0.53
LIG3-201ENST00000262327 ZNF396Q96N95 335 aaPredicted RBP11.71□□□□□ -0.53
LIG3-201ENST00000262327 ASAP1Q9ULH1 1129 aa11.71□□□□□ -0.53
LIG3-201ENST00000262327 CARMIL3Q8ND23 1372 aa11.71□□□□□ -0.54
LIG3-201ENST00000262327 SH3TC1Q8TE82 1336 aa11.71□□□□□ -0.54
LIG3-201ENST00000262327 KLF18A0A0U1RQI7 1052 aa11.71□□□□□ -0.54
LIG3-201ENST00000262327 RNF113AO15541 343 aaKnown RBP11.71□□□□□ -0.54
LIG3-201ENST00000262327 STK11IPQ8N1F8 1099 aa11.71□□□□□ -0.54
LIG3-201ENST00000262327 NKX2-3Q8TAU0 364 aa11.71□□□□□ -0.54
LIG3-201ENST00000262327 LLPHQ9BRT6 129 aaKnown RBP11.71□□□□□ -0.54
LIG3-201ENST00000262327 ZNF215Q9UL58 517 aaPredicted RBP11.71□□□□□ -0.54
LIG3-201ENST00000262327 HMGB1P09429 215 aaKnown RBP11.7□□□□□ -0.54
LIG3-201ENST00000262327 CDK11BP21127 795 aaKnown RBP11.7□□□□□ -0.54
LIG3-201ENST00000262327 PTPN14Q15678 1187 aa11.7□□□□□ -0.54
LIG3-201ENST00000262327 SYNE4Q8N205 404 aa11.7□□□□□ -0.54
LIG3-201ENST00000262327 ANO10Q9NW15 660 aa11.7□□□□□ -0.54
LIG3-201ENST00000262327 CWC25Q9NXE8 425 aaPredicted RBP11.7□□□□□ -0.54
LIG3-201ENST00000262327 GOLGA8BA8MQT2 603 aa11.7□□□□□ -0.54
LIG3-201ENST00000262327 CEP57L1Q8IYX8 460 aa11.7□□□□□ -0.54
LIG3-201ENST00000262327 MRPS27Q92552 414 aaKnown RBP11.7□□□□□ -0.54
LIG3-201ENST00000262327 DSCC1Q9BVC3 393 aa11.7□□□□□ -0.54
LIG3-201ENST00000262327 HELLSQ9NRZ9 838 aa11.7□□□□□ -0.54
LIG3-201ENST00000262327 KIF28PB7ZC32 967 aa11.69□□□□□ -0.54
LIG3-201ENST00000262327 H7C1W4 665 aa11.69□□□□□ -0.54
LIG3-201ENST00000262327 EYA2O00167 538 aa11.69□□□□□ -0.54
LIG3-201ENST00000262327 CCZ1BP86790 482 aa11.69□□□□□ -0.54
LIG3-201ENST00000262327 CCZ1P86791 482 aaPredicted RBP11.69□□□□□ -0.54
LIG3-201ENST00000262327 ZRSR1Q15695 479 aaKnown RBP11.69□□□□□ -0.54
LIG3-201ENST00000262327 TMC6Q7Z403 805 aa11.69□□□□□ -0.54
LIG3-201ENST00000262327 C8orf76Q96K31 380 aa11.69□□□□□ -0.54
LIG3-201ENST00000262327 PUS7LQ9H0K6 701 aaKnown RBP11.69□□□□□ -0.54
LIG3-201ENST00000262327 IFNKQ9P0W0 207 aa11.69□□□□□ -0.54
LIG3-201ENST00000262327 ORC3Q9UBD5 711 aaPredicted RBP11.69□□□□□ -0.54
LIG3-201ENST00000262327 PRC1O43663 620 aa11.69□□□□□ -0.54
LIG3-201ENST00000262327 FGAP02671 866 aa11.69□□□□□ -0.54
LIG3-201ENST00000262327 HSP90AA4PQ58FG1 418 aa11.69□□□□□ -0.54
LIG3-201ENST00000262327 FMR1NBQ8N0W7 255 aaPredicted RBP11.69□□□□□ -0.54
LIG3-201ENST00000262327 CGNQ9P2M7 1197 aaKnown RBP11.69□□□□□ -0.54
LIG3-201ENST00000262327 PALLDQ8WX93 1383 aa11.69□□□□□ -0.54
LIG3-201ENST00000262327 FOXP2O15409 715 aa11.68□□□□□ -0.54
LIG3-201ENST00000262327 GOLGA8FQ08AF8 430 aa11.68□□□□□ -0.54
LIG3-201ENST00000262327 GOLGA8DPQ0D2H9 430 aa11.68□□□□□ -0.54
LIG3-201ENST00000262327 TTC39AQ5SRH9 613 aa11.68□□□□□ -0.54
LIG3-201ENST00000262327 MRFAP1L1Q96HT8 127 aa11.68□□□□□ -0.54
LIG3-201ENST00000262327 XPO4Q9C0E2 1151 aaKnown RBP11.68□□□□□ -0.54
LIG3-201ENST00000262327 SALL1Q9NSC2 1324 aa11.68□□□□□ -0.54
LIG3-201ENST00000262327 UBE2Q2LH0YL09 131 aa11.68□□□□□ -0.54
LIG3-201ENST00000262327 CPLX1O14810 134 aa11.68□□□□□ -0.54
LIG3-201ENST00000262327 CTAGE5O15320 804 aa11.68□□□□□ -0.54
LIG3-201ENST00000262327 STARD3NLO95772 234 aa11.68□□□□□ -0.54
LIG3-201ENST00000262327 LMOD1P29536 600 aaPredicted RBP11.68□□□□□ -0.54
LIG3-201ENST00000262327 IL15P40933 162 aaPredicted RBP11.68□□□□□ -0.54
LIG3-201ENST00000262327 ZAP70P43403 619 aa11.68□□□□□ -0.54
LIG3-201ENST00000262327 NBPF11Q86T75 865 aa11.68□□□□□ -0.54
LIG3-201ENST00000262327 SMARCC1Q92922 1105 aaPredicted RBP11.68□□□□□ -0.54
LIG3-201ENST00000262327 SECISBP2LQ93073 1101 aaKnown RBP11.68□□□□□ -0.54
LIG3-201ENST00000262327 FAM89AQ96GI7 184 aa11.68□□□□□ -0.54
LIG3-201ENST00000262327 CEP126Q9P2H0 1117 aa11.68□□□□□ -0.54
LIG3-201ENST00000262327 SARM1Q6SZW1 724 aa11.68□□□□□ -0.54
LIG3-201ENST00000262327 LINC00301Q8NCQ3 95 aa11.68□□□□□ -0.54
LIG3-201ENST00000262327 INCENPQ9NQS7 918 aa11.68□□□□□ -0.54
LIG3-201ENST00000262327 ELF2Q15723 593 aa11.67□□□□□ -0.54
LIG3-201ENST00000262327 LRRN4CLQ8ND94 238 aa11.67□□□□□ -0.54
LIG3-201ENST00000262327 XAGE2Q96GT9 111 aa11.67□□□□□ -0.54
LIG3-201ENST00000262327 SPTLC2O15270 562 aa11.67□□□□□ -0.54
LIG3-201ENST00000262327 CDC25BP30305 580 aa11.67□□□□□ -0.54
LIG3-201ENST00000262327 DHX37Q8IY37 1157 aaKnown RBP11.67□□□□□ -0.54
LIG3-201ENST00000262327 ZNF274Q96GC6 653 aaPredicted RBP11.67□□□□□ -0.54
LIG3-201ENST00000262327 AGXT2Q9BYV1 514 aa11.67□□□□□ -0.54
LIG3-201ENST00000262327 QTRT2Q9H974 415 aaKnown RBP11.67□□□□□ -0.54
LIG3-201ENST00000262327 SENP2Q9HC62 589 aa11.67□□□□□ -0.54
LIG3-201ENST00000262327 KIAA1468Q9P260 1216 aa11.67□□□□□ -0.54
LIG3-201ENST00000262327 CTNNA3Q9UI47 895 aa11.67□□□□□ -0.54
LIG3-201ENST00000262327 PAXBP1Q9Y5B6 917 aa11.67□□□□□ -0.54
LIG3-201ENST00000262327 ATP1A3P13637 1013 aa11.66□□□□□ -0.54
LIG3-201ENST00000262327 ANTXR2P58335 489 aa11.66□□□□□ -0.54
LIG3-201ENST00000262327 ADALQ6DHV7 355 aa11.66□□□□□ -0.54
LIG3-201ENST00000262327 CCAR2Q8N163 923 aaKnown RBP11.66□□□□□ -0.54
LIG3-201ENST00000262327 PHKBQ93100 1093 aa11.66□□□□□ -0.54
LIG3-201ENST00000262327 MYL10Q9BUA6 226 aa11.66□□□□□ -0.54
LIG3-201ENST00000262327 HPS5Q9UPZ3 1129 aa11.66□□□□□ -0.54
LIG3-201ENST00000262327 CICQ96RK0 1608 aaPredicted RBP11.66□□□□□ -0.54
LIG3-201ENST00000262327 A0A0G2JS52 829 aa11.66□□□□□ -0.54
LIG3-201ENST00000262327 ZNF202O95125 648 aa11.66□□□□□ -0.54
LIG3-201ENST00000262327 APPP05067 770 aa11.66□□□□□ -0.54
LIG3-201ENST00000262327 IMMTQ16891 758 aaKnown RBP11.66□□□□□ -0.54
LIG3-201ENST00000262327 CCDC57Q2TAC2 916 aa11.66□□□□□ -0.54
LIG3-201ENST00000262327 MYSM1Q5VVJ2 828 aa11.66□□□□□ -0.54
LIG3-201ENST00000262327 SYNE3Q6ZMZ3 975 aa11.66□□□□□ -0.54
LIG3-201ENST00000262327 TEX2Q8IWB9 1127 aa11.66□□□□□ -0.54
LIG3-201ENST00000262327 DNAJC10Q8IXB1 793 aa11.66□□□□□ -0.54
LIG3-201ENST00000262327 ACSBG1Q96GR2 724 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms