RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 TMC6Q7Z403 805 aa24.79■■□□□ 1.56
TRIM28-201ENST00000253024 FMR1NBQ8N0W7 255 aaPredicted RBP24.79■■□□□ 1.56
TRIM28-201ENST00000253024 MIGA1Q8NAN2 632 aa24.79■■□□□ 1.56
TRIM28-201ENST00000253024 FBXO18Q8NFZ0 1043 aa24.79■■□□□ 1.56
TRIM28-201ENST00000253024 ANO10Q9NW15 660 aa24.79■■□□□ 1.56
TRIM28-201ENST00000253024 AKAP2Q9Y2D5 859 aa24.79■■□□□ 1.56
TRIM28-201ENST00000253024 PHRF1Q9P1Y6 1649 aaKnown RBP24.79■■□□□ 1.56
TRIM28-201ENST00000253024 ERVV-2B6SEH9 535 aa24.79■■□□□ 1.56
TRIM28-201ENST00000253024 PRKAB2O43741 272 aa24.79■■□□□ 1.56
TRIM28-201ENST00000253024 CTNNA3Q9UI47 895 aa24.79■■□□□ 1.56
TRIM28-201ENST00000253024 ATP1A3P13637 1013 aa24.78■■□□□ 1.56
TRIM28-201ENST00000253024 TTLL11Q8NHH1 800 aa24.78■■□□□ 1.56
TRIM28-201ENST00000253024 hCG_1642624A0A1W2PR95 340 aa24.78■■□□□ 1.56
TRIM28-201ENST00000253024 ZNF202O95125 648 aa24.78■■□□□ 1.56
TRIM28-201ENST00000253024 TPM3P06753 285 aa24.78■■□□□ 1.56
TRIM28-201ENST00000253024 METAP2P50579 478 aaKnown RBP eCLIP24.78■■□□□ 1.563e-8■■□□□ 12.9
TRIM28-201ENST00000253024 TMX1Q9H3N1 280 aa24.78■■□□□ 1.56
TRIM28-201ENST00000253024 MROH7-TTC4A0A0A0MT08 1334 aa24.78■■□□□ 1.56
TRIM28-201ENST00000253024 CAMTA1Q9Y6Y1 1673 aa24.78■■□□□ 1.56
TRIM28-201ENST00000253024 MAP7D2Q96T17 732 aa24.78■■□□□ 1.56
TRIM28-201ENST00000253024 AGXT2Q9BYV1 514 aa24.78■■□□□ 1.56
TRIM28-201ENST00000253024 XPO4Q9C0E2 1151 aaKnown RBP24.78■■□□□ 1.56
TRIM28-201ENST00000253024 ARMT1Q9H993 441 aa24.78■■□□□ 1.56
TRIM28-201ENST00000253024 WTIPA6NIX2 430 aaPredicted RBP24.77■■□□□ 1.56
TRIM28-201ENST00000253024 PDIA4P13667 645 aaKnown RBP24.77■■□□□ 1.56
TRIM28-201ENST00000253024 BTG4Q9NY30 223 aa24.77■■□□□ 1.56
TRIM28-201ENST00000253024 SLC3A2P08195 630 aaKnown RBP24.77■■□□□ 1.56
TRIM28-201ENST00000253024 GPR108Q9NPR9 543 aa24.77■■□□□ 1.56
TRIM28-201ENST00000253024 SEC31BQ9NQW1 1179 aa24.77■■□□□ 1.56
TRIM28-201ENST00000253024 ATG3Q9NT62 314 aa24.77■■□□□ 1.56
TRIM28-201ENST00000253024 PFKFB1P16118 471 aa24.76■■□□□ 1.55
TRIM28-201ENST00000253024 NEDD4P46934 1319 aa24.76■■□□□ 1.55
TRIM28-201ENST00000253024 PNOCQ13519 176 aa24.76■■□□□ 1.55
TRIM28-201ENST00000253024 SMIM5Q71RC9 77 aa24.76■■□□□ 1.55
TRIM28-201ENST00000253024 AIDAQ96BJ3 306 aa24.76■■□□□ 1.55
TRIM28-201ENST00000253024 ZBTB9Q96C00 473 aa24.76■■□□□ 1.55
TRIM28-201ENST00000253024 SLC4A9Q96Q91 983 aa24.76■■□□□ 1.55
TRIM28-201ENST00000253024 KCNJ14Q9UNX9 436 aa24.76■■□□□ 1.55
TRIM28-201ENST00000253024 LAMA4Q16363 1823 aa24.76■■□□□ 1.55
TRIM28-201ENST00000253024 CEP135Q66GS9 1140 aa24.75■■□□□ 1.55
TRIM28-201ENST00000253024 CCDC102BQ68D86 513 aa24.75■■□□□ 1.55
TRIM28-201ENST00000253024 NLRP10Q86W26 655 aa24.75■■□□□ 1.55
TRIM28-201ENST00000253024 MAGEB6Q8N7X4 407 aa24.75■■□□□ 1.55
TRIM28-201ENST00000253024 ZBTB38Q8NAP3 1195 aaPredicted RBP24.75■■□□□ 1.55
TRIM28-201ENST00000253024 CCDC112Q8NEF3 446 aa24.75■■□□□ 1.55
TRIM28-201ENST00000253024 CCDC94Q9BW85 323 aaPredicted RBP24.75■■□□□ 1.55
TRIM28-201ENST00000253024 SLC26A6Q9BXS9 759 aa24.75■■□□□ 1.55
TRIM28-201ENST00000253024 FOXN1O15353 648 aa24.75■■□□□ 1.55
TRIM28-201ENST00000253024 CIAO1O76071 339 aa24.75■■□□□ 1.55
TRIM28-201ENST00000253024 SLC4A8Q2Y0W8 1093 aa24.75■■□□□ 1.55
TRIM28-201ENST00000253024 VPS37DQ86XT2 251 aa24.75■■□□□ 1.55
TRIM28-201ENST00000253024 FAM177A1Q8N128 213 aaPredicted RBP24.75■■□□□ 1.55
TRIM28-201ENST00000253024 ACSBG1Q96GR2 724 aa24.75■■□□□ 1.55
TRIM28-201ENST00000253024 ANKRD18BA2A2Z9 1011 aa24.75■■□□□ 1.55
TRIM28-201ENST00000253024 ANO1Q5XXA6 986 aa24.75■■□□□ 1.55
TRIM28-201ENST00000253024 ADALQ6DHV7 355 aa24.75■■□□□ 1.55
TRIM28-201ENST00000253024 PDILTQ8N807 584 aa24.75■■□□□ 1.55
TRIM28-201ENST00000253024 KIAA1468Q9P260 1216 aa24.75■■□□□ 1.55
TRIM28-201ENST00000253024 KIF23Q02241 960 aaPredicted RBP24.74■■□□□ 1.55
TRIM28-201ENST00000253024 RTEL1Q9NZ71 1219 aa24.74■■□□□ 1.55
TRIM28-201ENST00000253024 KRT40Q6A162 431 aa24.74■■□□□ 1.55
TRIM28-201ENST00000253024 NUP133Q8WUM0 1156 aa24.74■■□□□ 1.55
TRIM28-201ENST00000253024 RIPOR2Q9Y4F9 1068 aa24.74■■□□□ 1.55
TRIM28-201ENST00000253024 GUCY1A2P33402 732 aa24.73■■□□□ 1.55
TRIM28-201ENST00000253024 NCBP1Q09161 790 aaKnown RBP24.73■■□□□ 1.55
TRIM28-201ENST00000253024 MBD4O95243 580 aa24.73■■□□□ 1.55
TRIM28-201ENST00000253024 STARD3NLO95772 234 aa24.73■■□□□ 1.55
TRIM28-201ENST00000253024 TMEM67Q5HYA8 995 aa24.73■■□□□ 1.55
TRIM28-201ENST00000253024 PCCAP05165 728 aaPredicted RBP24.72■■□□□ 1.55
TRIM28-201ENST00000253024 PDE6AP16499 860 aa24.72■■□□□ 1.55
TRIM28-201ENST00000253024 DDX24Q9GZR7 859 aaKnown RBP eCLIP24.72■■□□□ 1.551e-8■■■□□ 15.2
TRIM28-201ENST00000253024 SLAIN2Q9P270 581 aa24.72■■□□□ 1.55
TRIM28-201ENST00000253024 CTAGE5O15320 804 aa24.72■■□□□ 1.55
TRIM28-201ENST00000253024 ADD2P35612 726 aa24.72■■□□□ 1.55
TRIM28-201ENST00000253024 CTSWP56202 376 aa24.72■■□□□ 1.55
TRIM28-201ENST00000253024 PTPN14Q15678 1187 aa24.72■■□□□ 1.55
TRIM28-201ENST00000253024 KCNQ4P56696 695 aa24.72■■□□□ 1.55
TRIM28-201ENST00000253024 ZNF827Q17R98 1081 aa24.72■■□□□ 1.55
TRIM28-201ENST00000253024 ANGEL1Q9UNK9 670 aaKnown RBP24.72■■□□□ 1.55
TRIM28-201ENST00000253024 RFX7Q2KHR2 1363 aa24.71■■□□□ 1.55
TRIM28-201ENST00000253024 ALS2Q96Q42 1657 aa24.71■■□□□ 1.55
TRIM28-201ENST00000253024 IFIT3O14879 490 aaKnown RBP24.71■■□□□ 1.55
TRIM28-201ENST00000253024 DHX16O60231 1041 aaKnown RBP24.71■■□□□ 1.55
TRIM28-201ENST00000253024 GRIN1Q05586 938 aa24.71■■□□□ 1.55
TRIM28-201ENST00000253024 NBPF11Q86T75 865 aa24.71■■□□□ 1.55
TRIM28-201ENST00000253024 GOLGA8AA7E2F4 631 aa24.71■■□□□ 1.55
TRIM28-201ENST00000253024 GRAMD1CQ8IYS0 662 aa24.71■■□□□ 1.55
TRIM28-201ENST00000253024 ZNF335Q9H4Z2 1342 aaPredicted RBP24.71■■□□□ 1.55
TRIM28-201ENST00000253024 GIGYF2Q6Y7W6 1299 aaKnown RBP24.7■■□□□ 1.55
TRIM28-201ENST00000253024 TACC3Q9Y6A5 838 aa24.7■■□□□ 1.55
TRIM28-201ENST00000253024 GTF2F1P35269 517 aaKnown RBP eCLIP24.7■■□□□ 1.542e-6■■□□□ 14.1
TRIM28-201ENST00000253024 BCAMP50895 628 aa24.7■■□□□ 1.54
TRIM28-201ENST00000253024 APOA5Q6Q788 366 aa24.7■■□□□ 1.54
TRIM28-201ENST00000253024 DPF2Q92785 391 aa24.7■■□□□ 1.54
TRIM28-201ENST00000253024 ABCF2Q9UG63 623 aa24.7■■□□□ 1.54
TRIM28-201ENST00000253024 ZNF215Q9UL58 517 aaPredicted RBP24.7■■□□□ 1.54
TRIM28-201ENST00000253024 SYKP43405 635 aa24.69■■□□□ 1.54
TRIM28-201ENST00000253024 CCZ1BP86790 482 aa24.69■■□□□ 1.54
TRIM28-201ENST00000253024 CCZ1P86791 482 aaPredicted RBP24.69■■□□□ 1.54
TRIM28-201ENST00000253024 NAPBQ9H115 298 aa24.69■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms