RNA–Protein interactions for RNA: ENSMUST00000209611.1

Sh3rf1-202, Transcript of E3 ubiquitin-protein ligase SH3RF1, mousemouse

TSL 1 (best) BASIC

Gene Sh3rf1, Length 4,416 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1-202ENSMUST00000209611 Ctdnep1Q3TP92 244 aa11.15□□□□□ -0.62
Sh3rf1-202ENSMUST00000209611 IcoslgQ9JHJ8 322 aa11.15□□□□□ -0.62
Sh3rf1-202ENSMUST00000209611 Tuft1O08970 390 aa11.15□□□□□ -0.62
Sh3rf1-202ENSMUST00000209611 Gpatch3Q8BIY1 525 aa11.15□□□□□ -0.62
Sh3rf1-202ENSMUST00000209611 HdlbpQ8VDJ3 1268 aaKnown RBP11.15□□□□□ -0.62
Sh3rf1-202ENSMUST00000209611 Phf14Q9D4H9 881 aa11.15□□□□□ -0.62
Sh3rf1-202ENSMUST00000209611 Stat5bP42232 786 aa11.15□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Ubash3aQ3V3E1 624 aa11.15□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Polr3gQ6NXY9 223 aa11.15□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Tpcn2Q8BWC0 731 aa11.15□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 SrrtQ99MR6 875 aaKnown RBP11.15□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Wdhd1P59328 1117 aa11.14□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Nxf7Q80SZ6 620 aaKnown RBP11.14□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Alx1Q8C8B0 326 aa11.14□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Pold4Q9CWP8 107 aa11.14□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Gm9992B2RWK3 458 aa11.14□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Unc93aQ710D3 458 aa11.14□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Mtmr3Q8K296 1196 aa11.14□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Mrpl12Q9DB15 201 aaKnown RBP11.14□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Stk38Q91VJ4 465 aa11.14□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Wdr33Q8K4P0 1330 aaKnown RBP11.13□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Oas2E9Q9A9 742 aa11.13□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Mcm3P25206 812 aaKnown RBP11.13□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Acap3Q6NXL5 833 aa11.13□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Ccdc82Q6PG04 518 aa11.13□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Plcd1Q8R3B1 756 aa11.13□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 TnmdQ9EP64 317 aa11.13□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 TbcaP48428 108 aaKnown RBP11.13□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Kcnq3Q8K3F6 873 aa11.13□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Terf2ipQ91VL8 393 aa11.13□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Ndufa8Q9DCJ5 172 aa11.13□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Cntnap1O54991 1385 aa11.13□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Map7d2A2AG50 781 aa11.13□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Cfap58B2RW38 873 aa11.13□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Lipo1J3QME6 396 aa11.13□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Celf1P28659 486 aaKnown RBP11.13□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Naa30Q8CES0 364 aa11.13□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 WtapQ9ER69 396 aa11.13□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Shank3Q4ACU6 1730 aa11.13□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Rbm28Q8CGC6 750 aaKnown RBP11.12□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Myh1Q5SX40 1942 aa11.12□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 CoblQ5NBX1 1337 aaKnown RBP11.12□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Fchsd1Q6PFY1 688 aa11.12□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Hook1Q8BIL5 728 aa11.12□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Ces1hD3Z298 562 aa11.12□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Fam184aE9PW83 1143 aa11.12□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Rbm15bQ6PHZ5 887 aaKnown RBP11.12□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Olfml1Q8BSH2 233 aa11.12□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Hnrnpul1Q8VDM6 859 aaKnown RBP11.12□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Eaf2Q91ZD6 262 aa11.12□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Ccdc39Q9D5Y1 937 aa11.12□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Mctp1E9PV86 951 aa11.12□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 NppbP40753 121 aa11.12□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Cep131Q62036 1060 aa11.12□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Pim2Q62070 370 aa11.12□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Myl10Q62082 202 aa11.12□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Sept9Q80UG5 583 aa11.12□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Rbm33Q9CXK9 1231 aaKnown RBP11.12□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Myo3bQ1EG27 1305 aa11.12□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Med23Q80YQ2 1367 aa11.11□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Cyp2d9P11714 504 aa11.11□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Cep63Q3UPP8 700 aa11.11□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Wasf1Q8R5H6 559 aa11.11□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 UvssaQ9D479 717 aa11.11□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Cxcl11Q9JHH5 100 aa11.11□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Cyp3a59D3Z2W7 503 aa11.11□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Zhx1P70121 873 aa11.11□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Ccdc174Q3U155 467 aa11.11□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Ifit1Q64282 463 aa11.11□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Smarcc2Q6PDG5 1213 aa11.11□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 9230110C19RikQ8CC70 267 aa11.11□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Ces1dQ8VCT4 565 aa11.11□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Tpd52l1O54818 204 aa11.11□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Jdp2P97875 163 aa11.11□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Sept12Q9D451 317 aa11.11□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Tnrc6cQ3UHC0 1690 aaKnown RBP11.11□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Ccdc112A0AUP1 442 aa11.1□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Ccdc173A0JLY1 547 aa11.1□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Cdcp1Q5U462 833 aa11.1□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Ube3cQ80U95 1083 aa11.1□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Ubxn4Q8VCH8 506 aa11.1□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Cacna1sQ02789 1880 aa11.1□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Krt24A1L317 512 aa11.1□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Cyp26a1O55127 497 aa11.1□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Ccp110Q7TSH4 1004 aa11.1□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Cd22P35329 862 aa11.1□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Zscan22Q8BGS5 496 aa11.1□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Wdr24Q8CFJ9 790 aa11.1□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Kat6bQ8BRB7 1872 aa11.1□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Zscan20B2KFW1 1030 aa11.1□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Kiaa0319Q5SZV5 1081 aa11.1□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Krt40Q6IFX3 439 aa11.1□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Ppm1fQ8CGA0 452 aa11.1□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 SdsQ8VBT2 327 aa11.1□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Prdm11A2AGX3 565 aa11.09□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Ankrd63A2ARS0 390 aa11.09□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Vmn2r23E9PXI5 849 aa11.09□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Gm20425E9Q035 978 aaKnown RBP11.09□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 Zbtb21E9Q444 1094 aa11.09□□□□□ -0.63
Sh3rf1-202ENSMUST00000209611 SrprbP47758 269 aa11.09□□□□□ -0.63
Retrieved 100 of 22,080 RNA–protein pairs in 24.5 ms