RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 FAM223BA6NKX1 122 aa11.3□□□□□ -0.6
SYNE2-228ENST00000639659 OR2J3O76001 311 aa11.3□□□□□ -0.6
SYNE2-228ENST00000639659 BPNT1O95861 308 aa11.3□□□□□ -0.6
SYNE2-228ENST00000639659 FOLR2P14207 255 aa11.3□□□□□ -0.6
SYNE2-228ENST00000639659 MECP2P51608 486 aaKnown RBP11.3□□□□□ -0.6
SYNE2-228ENST00000639659 MRPS15P82914 257 aaKnown RBP11.3□□□□□ -0.6
SYNE2-228ENST00000639659 DEFB114Q30KQ6 69 aa11.3□□□□□ -0.6
SYNE2-228ENST00000639659 HSD17B12Q53GQ0 312 aa11.3□□□□□ -0.6
SYNE2-228ENST00000639659 TTC23Q5W5X9 447 aa11.3□□□□□ -0.6
SYNE2-228ENST00000639659 SLC16A13Q7RTY0 426 aa11.3□□□□□ -0.6
SYNE2-228ENST00000639659 FAM223AQ8IWN6 122 aa11.3□□□□□ -0.6
SYNE2-228ENST00000639659 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.3□□□□□ -0.6
SYNE2-228ENST00000639659 ARHGAP5-AS1Q96IT6 56 aa11.3□□□□□ -0.6
SYNE2-228ENST00000639659 SDHAF2Q9NX18 166 aa11.3□□□□□ -0.6
SYNE2-228ENST00000639659 C2orf70A6NJV1 201 aa11.29□□□□□ -0.6
SYNE2-228ENST00000639659 SRRM4A7MD48 611 aaKnown RBP11.29□□□□□ -0.6
SYNE2-228ENST00000639659 TRDCB7Z8K6 153 aa11.29□□□□□ -0.6
SYNE2-228ENST00000639659 ACTL6BO94805 426 aa11.29□□□□□ -0.6
SYNE2-228ENST00000639659 CRYZL1O95825 349 aa11.29□□□□□ -0.6
SYNE2-228ENST00000639659 IGHV3-23P01764 117 aa11.29□□□□□ -0.6
SYNE2-228ENST00000639659 SRMP19623 302 aa11.29□□□□□ -0.6
SYNE2-228ENST00000639659 ZNF45Q02386 682 aa11.29□□□□□ -0.6
SYNE2-228ENST00000639659 C10orf55Q5SWW7 151 aa11.29□□□□□ -0.6
SYNE2-228ENST00000639659 CEACAM19Q7Z692 300 aa11.29□□□□□ -0.6
SYNE2-228ENST00000639659 C10orf67Q8IYJ2 551 aa11.29□□□□□ -0.6
SYNE2-228ENST00000639659 OR6M1Q8NGM8 313 aa11.29□□□□□ -0.6
SYNE2-228ENST00000639659 C5orf30Q96GV9 206 aa11.29□□□□□ -0.6
SYNE2-228ENST00000639659 PECRQ9BY49 303 aa11.29□□□□□ -0.6
SYNE2-228ENST00000639659 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.28□□□□□ -0.6
SYNE2-228ENST00000639659 SCAF4O95104 1147 aaKnown RBP11.28□□□□□ -0.6
SYNE2-228ENST00000639659 OR2C1O95371 312 aa11.28□□□□□ -0.6
SYNE2-228ENST00000639659 CD1AP06126 327 aa11.28□□□□□ -0.6
SYNE2-228ENST00000639659 QRFPP83859 136 aa11.28□□□□□ -0.6
SYNE2-228ENST00000639659 PRSS8Q16651 343 aa11.28□□□□□ -0.6
SYNE2-228ENST00000639659 TMEM177Q53S58 311 aa11.28□□□□□ -0.6
SYNE2-228ENST00000639659 IGSF11Q5DX21 431 aa11.28□□□□□ -0.6
SYNE2-228ENST00000639659 BPIFB6Q8NFQ5 453 aa11.28□□□□□ -0.6
SYNE2-228ENST00000639659 OR52B4Q8NGK2 314 aa11.28□□□□□ -0.6
SYNE2-228ENST00000639659 MAFIPQ8WZ33 124 aa11.28□□□□□ -0.6
SYNE2-228ENST00000639659 PHYHIPQ92561 330 aa11.28□□□□□ -0.6
SYNE2-228ENST00000639659 KCTD12Q96CX2 325 aaKnown RBP11.28□□□□□ -0.6
SYNE2-228ENST00000639659 GGTLC1Q9BX51 225 aa11.28□□□□□ -0.6
SYNE2-228ENST00000639659 FAM53CQ9NYF3 392 aa11.28□□□□□ -0.6
SYNE2-228ENST00000639659 S4R3C0 116 aa11.28□□□□□ -0.6
SYNE2-228ENST00000639659 A0A0J9YWU9 116 aa11.27□□□□□ -0.61
SYNE2-228ENST00000639659 ZNF320A2RRD8 509 aa11.27□□□□□ -0.61
SYNE2-228ENST00000639659 NUPR2A6NF83 97 aa11.27□□□□□ -0.61
SYNE2-228ENST00000639659 FABP7O15540 132 aa11.27□□□□□ -0.61
SYNE2-228ENST00000639659 KIR2DS2P43631 304 aa11.27□□□□□ -0.61
SYNE2-228ENST00000639659 CLDN12P56749 244 aa11.27□□□□□ -0.61
SYNE2-228ENST00000639659 MRGPRG-AS1Q2M3A8 158 aa11.27□□□□□ -0.61
SYNE2-228ENST00000639659 C15orf32Q32M92 178 aa11.27□□□□□ -0.61
SYNE2-228ENST00000639659 C19orf35Q6ZS72 473 aa11.27□□□□□ -0.61
SYNE2-228ENST00000639659 OR10J5Q8NHC4 309 aa11.27□□□□□ -0.61
SYNE2-228ENST00000639659 OVOL2Q9BRP0 275 aa11.27□□□□□ -0.61
SYNE2-228ENST00000639659 DCUN1D5Q9BTE7 237 aa11.27□□□□□ -0.61
SYNE2-228ENST00000639659 LOC102724200A0A096LPH7 203 aaPredicted RBP11.26□□□□□ -0.61
SYNE2-228ENST00000639659 J3QRK9 145 aa11.26□□□□□ -0.61
SYNE2-228ENST00000639659 GGCTO75223 188 aaKnown RBP11.26□□□□□ -0.61
SYNE2-228ENST00000639659 RRASP10301 218 aa11.26□□□□□ -0.61
SYNE2-228ENST00000639659 SERPINB10P48595 397 aa11.26□□□□□ -0.61
SYNE2-228ENST00000639659 TMEM50BP56557 158 aa11.26□□□□□ -0.61
SYNE2-228ENST00000639659 UBE2KP61086 200 aa11.26□□□□□ -0.61
SYNE2-228ENST00000639659 RAB11BQ15907 218 aa11.26□□□□□ -0.61
SYNE2-228ENST00000639659 OR2B11Q5JQS5 317 aa11.26□□□□□ -0.61
SYNE2-228ENST00000639659 ZNF57Q68EA5 555 aaPredicted RBP11.26□□□□□ -0.61
SYNE2-228ENST00000639659 TMEM61Q8N0U2 210 aa11.26□□□□□ -0.61
SYNE2-228ENST00000639659 DHRSXQ8N5I4 330 aa11.26□□□□□ -0.61
SYNE2-228ENST00000639659 RPP25LQ8N5L8 163 aaKnown RBP11.26□□□□□ -0.61
SYNE2-228ENST00000639659 MS4A15Q8N5U1 240 aa11.26□□□□□ -0.61
SYNE2-228ENST00000639659 NANOGP1Q8N7R0 232 aa11.26□□□□□ -0.61
SYNE2-228ENST00000639659 TEX45Q8NA69 505 aa11.26□□□□□ -0.61
SYNE2-228ENST00000639659 OR4A4PQ8NGN8 299 aa11.26□□□□□ -0.61
SYNE2-228ENST00000639659 TMEM203Q969S6 136 aa11.26□□□□□ -0.61
SYNE2-228ENST00000639659 SPIN2AQ99865 258 aa11.26□□□□□ -0.61
SYNE2-228ENST00000639659 SPIN2BQ9BPZ2 258 aa11.26□□□□□ -0.61
SYNE2-228ENST00000639659 GINS4Q9BRT9 223 aa11.26□□□□□ -0.61
SYNE2-228ENST00000639659 ZNF430Q9H8G1 570 aaPredicted RBP11.26□□□□□ -0.61
SYNE2-228ENST00000639659 ZC4H2Q9NQZ6 224 aa11.26□□□□□ -0.61
SYNE2-228ENST00000639659 TECRQ9NZ01 308 aaKnown RBP11.26□□□□□ -0.61
SYNE2-228ENST00000639659 PSORS1C1Q9UIG5 152 aa11.26□□□□□ -0.61
SYNE2-228ENST00000639659 HSF4Q9ULV5 492 aa11.26□□□□□ -0.61
SYNE2-228ENST00000639659 AK6Q9Y3D8 172 aaKnown RBP11.26□□□□□ -0.61
SYNE2-228ENST00000639659 A0A075B6Q4 140 aa11.25□□□□□ -0.61
SYNE2-228ENST00000639659 DPPA5A6NC42 116 aa11.25□□□□□ -0.61
SYNE2-228ENST00000639659 HMX3A6NHT5 357 aa11.25□□□□□ -0.61
SYNE2-228ENST00000639659 GSTT2P0CG29 244 aa11.25□□□□□ -0.61
SYNE2-228ENST00000639659 GSTT2BP0CG30 244 aa11.25□□□□□ -0.61
SYNE2-228ENST00000639659 SAA1P0DJI8 122 aaPredicted RBP11.25□□□□□ -0.61
SYNE2-228ENST00000639659 ARL3P36405 182 aa11.25□□□□□ -0.61
SYNE2-228ENST00000639659 EWSR1Q01844 656 aaKnown RBP eCLIP11.25□□□□□ -0.61
SYNE2-228ENST00000639659 C8orf59Q8N0T1 100 aaPredicted RBP11.25□□□□□ -0.61
SYNE2-228ENST00000639659 NECAP1Q8NC96 275 aa11.25□□□□□ -0.61
SYNE2-228ENST00000639659 FBXL7Q9UJT9 491 aa11.25□□□□□ -0.61
SYNE2-228ENST00000639659 TRBV9A0A0B4J1U6 114 aa11.24□□□□□ -0.61
SYNE2-228ENST00000639659 FOXI3A8MTJ6 420 aaPredicted RBP11.24□□□□□ -0.61
SYNE2-228ENST00000639659 CREBL2O60519 120 aaPredicted RBP11.24□□□□□ -0.61
SYNE2-228ENST00000639659 DEDDO75618 318 aa11.24□□□□□ -0.61
SYNE2-228ENST00000639659 CBLN1P23435 193 aa11.24□□□□□ -0.61
SYNE2-228ENST00000639659 TPBGQ13641 420 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms