RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 PYDC2Q56P42 97 aa15.08■□□□□ 0
CLN3-260ENST00000637578 C18orf65Q6ZTR6 163 aa15.08■□□□□ 0
CLN3-260ENST00000637578 OVCH2Q7RTZ1 564 aa15.08■□□□□ 0
CLN3-260ENST00000637578 LINC00482Q8N8I6 264 aa15.08■□□□□ 0
CLN3-260ENST00000637578 RNF5Q99942 180 aa15.08■□□□□ 0
CLN3-260ENST00000637578 RBMX2Q9Y388 322 aaKnown RBP15.08■□□□□ 0
CLN3-260ENST00000637578 OR2W1Q9Y3N9 320 aa15.08■□□□□ 0
CLN3-260ENST00000637578 J3QRK9 145 aa15.07■□□□□ 0
CLN3-260ENST00000637578 IGLL1P15814 213 aa15.07■□□□□ 0
CLN3-260ENST00000637578 FCGR2CP31995 323 aa15.07■□□□□ 0
CLN3-260ENST00000637578 THBS3P49746 956 aa15.07■□□□□ 0
CLN3-260ENST00000637578 GLDNQ6ZMI3 551 aaPredicted RBP15.07■□□□□ 0
CLN3-260ENST00000637578 OR2D2Q9H210 308 aa15.07■□□□□ 0
CLN3-260ENST00000637578 ZNF221Q9UK13 617 aa15.07■□□□□ 0
CLN3-260ENST00000637578 GAB2Q9UQC2 676 aa15.07■□□□□ 0
CLN3-260ENST00000637578 RBM7Q9Y580 266 aaKnown RBP15.07■□□□□ 0
CLN3-260ENST00000637578 TGP01266 2768 aa15.07■□□□□ 0
CLN3-260ENST00000637578 IGHV7-81A0A0B4J1V7 117 aa15.07■□□□□ 0
CLN3-260ENST00000637578 IGKV1D-13A0A0B4J2D9 117 aa15.07■□□□□ 0
CLN3-260ENST00000637578 RPLP1P05386 114 aaKnown RBP15.07■□□□□ 0
CLN3-260ENST00000637578 IGKV1-13P0DP09 117 aa15.07■□□□□ 0
CLN3-260ENST00000637578 AADACP22760 399 aa15.07■□□□□ 0
CLN3-260ENST00000637578 PTBP1P26599 531 aaKnown RBP eCLIP15.07■□□□□ 0
CLN3-260ENST00000637578 PPIFP30405 207 aaKnown RBP15.07■□□□□ 0
CLN3-260ENST00000637578 SSBP1Q04837 148 aaKnown RBP15.07■□□□□ 0
CLN3-260ENST00000637578 DYRK1AQ13627 763 aa15.07■□□□□ 0
CLN3-260ENST00000637578 LIN54Q6MZP7 749 aa15.07■□□□□ 0
CLN3-260ENST00000637578 REC114Q7Z4M0 266 aa15.07■□□□□ 0
CLN3-260ENST00000637578 ZNF695Q8IW36 515 aa15.07■□□□□ 0
CLN3-260ENST00000637578 MRPL41Q8IXM3 137 aaKnown RBP15.07■□□□□ 0
CLN3-260ENST00000637578 RCC1LQ96I51 464 aaKnown RBP15.07■□□□□ 0
CLN3-260ENST00000637578 P2RX4Q99571 388 aa15.07■□□□□ 0
CLN3-260ENST00000637578 OR51J1Q9H342 316 aa15.07■□□□□ 0
CLN3-260ENST00000637578 WASHC3Q9Y3C0 194 aa15.07■□□□□ 0
CLN3-260ENST00000637578 M0QYG6 137 aa15.06■□□□□ 0
CLN3-260ENST00000637578 CD3DP04234 171 aa15.06■□□□□ 0
CLN3-260ENST00000637578 VDAC1P21796 283 aa15.06■□□□□ 0
CLN3-260ENST00000637578 PSMB8P28062 276 aa15.06■□□□□ 0
CLN3-260ENST00000637578 MYCNOSP40205 109 aa15.06■□□□□ 0
CLN3-260ENST00000637578 CDX1P47902 265 aaPredicted RBP15.06■□□□□ 0
CLN3-260ENST00000637578 LUMP51884 338 aaPredicted RBP15.06■□□□□ 0
CLN3-260ENST00000637578 ACTBL2Q562R1 376 aa15.06■□□□□ 0
CLN3-260ENST00000637578 CXorf66Q5JRM2 361 aaPredicted RBP15.06■□□□□ 0
CLN3-260ENST00000637578 C8orf86Q6ZUL3 223 aa15.06■□□□□ 0
CLN3-260ENST00000637578 ZNF436-AS1Q8NC38 126 aaPredicted RBP15.06■□□□□ 0
CLN3-260ENST00000637578 C5orf30Q96GV9 206 aa15.06■□□□□ 0
CLN3-260ENST00000637578 DUS4LO95620 317 aaKnown RBP15.05■□□□□ -0
CLN3-260ENST00000637578 PPYP01298 95 aa15.05■□□□□ -0
CLN3-260ENST00000637578 VAX1Q5SQQ9 334 aa15.05■□□□□ -0
CLN3-260ENST00000637578 ZNF660Q6AZW8 331 aaPredicted RBP15.05■□□□□ -0
CLN3-260ENST00000637578 Q8N402 240 aa15.05■□□□□ -0
CLN3-260ENST00000637578 ZNF383Q8NA42 475 aa15.05■□□□□ -0
CLN3-260ENST00000637578 TMEM229BQ8NBD8 167 aa15.05■□□□□ -0
CLN3-260ENST00000637578 KLHL30-AS1Q8NEE0 82 aa15.05■□□□□ -0
CLN3-260ENST00000637578 MYOZ3Q8TDC0 251 aa15.05■□□□□ -0
CLN3-260ENST00000637578 GIMAP1Q8WWP7 306 aa15.05■□□□□ -0
CLN3-260ENST00000637578 TINAGL1Q9GZM7 467 aaPredicted RBP15.05■□□□□ -0
CLN3-260ENST00000637578 SRRQ9GZT4 340 aa15.05■□□□□ -0
CLN3-260ENST00000637578 KIAA1456Q9P272 454 aa15.05■□□□□ -0
CLN3-260ENST00000637578 RRHO14718 337 aa15.04■□□□□ -0
CLN3-260ENST00000637578 PRB2P02812 416 aaPredicted RBP15.04■□□□□ -0
CLN3-260ENST00000637578 TBPP20226 339 aa15.04■□□□□ -0
CLN3-260ENST00000637578 CRIP2P52943 208 aaPredicted RBP15.04■□□□□ -0
CLN3-260ENST00000637578 TAS2R19P59542 299 aa15.04■□□□□ -0
CLN3-260ENST00000637578 RNASE10Q5GAN6 216 aaKnown RBP15.04■□□□□ -0
CLN3-260ENST00000637578 DHRS11Q6UWP2 260 aa15.04■□□□□ -0
CLN3-260ENST00000637578 LCNL1Q6ZST4 164 aa15.04■□□□□ -0
CLN3-260ENST00000637578 MFSD4AQ8N468 514 aa15.04■□□□□ -0
CLN3-260ENST00000637578 DRAXINQ8NBI3 349 aaPredicted RBP15.04■□□□□ -0
CLN3-260ENST00000637578 OR4D10Q8NGI6 311 aa15.04■□□□□ -0
CLN3-260ENST00000637578 TRIM63Q969Q1 353 aa15.04■□□□□ -0
CLN3-260ENST00000637578 THAP7Q9BT49 309 aaPredicted RBP15.04■□□□□ -0
CLN3-260ENST00000637578 SDHAF2Q9NX18 166 aa15.04■□□□□ -0
CLN3-260ENST00000637578 NUDT19A8MXV4 375 aa15.03■□□□□ -0
CLN3-260ENST00000637578 ATP6V0E1O15342 81 aa15.03■□□□□ -0
CLN3-260ENST00000637578 IGLV1-40P01703 118 aa15.03■□□□□ -0
CLN3-260ENST00000637578 CD74P04233 296 aa15.03■□□□□ -0
CLN3-260ENST00000637578 LINC00205P59089 165 aa15.03■□□□□ -0
CLN3-260ENST00000637578 FXYD4P59646 89 aa15.03■□□□□ -0
CLN3-260ENST00000637578 C19orf54Q5BKX5 351 aa15.03■□□□□ -0
CLN3-260ENST00000637578 MINDY2Q8NBR6 621 aa15.03■□□□□ -0
CLN3-260ENST00000637578 ZNF2Q9BSG1 426 aaPredicted RBP15.03■□□□□ -0
CLN3-260ENST00000637578 G3V318 75 aa15.02■□□□□ -0
CLN3-260ENST00000637578 H7C2Y5 167 aa15.02■□□□□ -0
CLN3-260ENST00000637578 RAB3DO95716 219 aa15.02■□□□□ -0
CLN3-260ENST00000637578 IGKV1-16P04430 117 aa15.02■□□□□ -0
CLN3-260ENST00000637578 TSPAN5P62079 268 aa15.02■□□□□ -0
CLN3-260ENST00000637578 KIAA0141Q14154 515 aaPredicted RBP15.02■□□□□ -0
CLN3-260ENST00000637578 STEAP1BQ6NZ63 245 aa15.02■□□□□ -0
CLN3-260ENST00000637578 LINC00299Q6ZSB3 139 aa15.02■□□□□ -0
CLN3-260ENST00000637578 ZNF645Q8N7E2 425 aa15.02■□□□□ -0
CLN3-260ENST00000637578 OR6F1Q8NGZ6 308 aa15.02■□□□□ -0
CLN3-260ENST00000637578 SECTM1Q8WVN6 248 aa15.02■□□□□ -0
CLN3-260ENST00000637578 RAX2Q96IS3 184 aa15.02■□□□□ -0
CLN3-260ENST00000637578 FBXL15Q9H469 300 aa15.02■□□□□ -0
CLN3-260ENST00000637578 AKIP1Q9NQ31 210 aa15.02■□□□□ -0
CLN3-260ENST00000637578 TAS2R8Q9NYW2 309 aa15.02■□□□□ -0
CLN3-260ENST00000637578 ANKRD20A5PA0PJZ0 165 aa15.02□□□□□ -0.01
CLN3-260ENST00000637578 M0R1X1 148 aa15.02□□□□□ -0.01
CLN3-260ENST00000637578 FCN1O00602 326 aa15.02□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms