RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 FAM166BA8MTA8 275 aa15.41■□□□□ 0.06
UPF1-210ENST00000600689 FAM90A22PA8MWA6 464 aa15.41■□□□□ 0.06
UPF1-210ENST00000600689 FAM90A12PA8MX19 464 aa15.41■□□□□ 0.06
UPF1-210ENST00000600689 FAM90A5PA8MXJ8 464 aa15.41■□□□□ 0.06
UPF1-210ENST00000600689 FAM90A23PA8MXZ1 464 aa15.41■□□□□ 0.06
UPF1-210ENST00000600689 CDIPTO14735 213 aa15.41■□□□□ 0.06
UPF1-210ENST00000600689 FAM90A15PP0C7V4 464 aa15.41■□□□□ 0.06
UPF1-210ENST00000600689 FAM90A13PP0C7W8 464 aa15.41■□□□□ 0.06
UPF1-210ENST00000600689 FAM90A14PP0C7W9 464 aa15.41■□□□□ 0.06
UPF1-210ENST00000600689 FAM90A24PP0C7X0 464 aa15.41■□□□□ 0.06
UPF1-210ENST00000600689 KITLGP21583 273 aa15.41■□□□□ 0.06
UPF1-210ENST00000600689 KRTDAPP60985 99 aa15.41■□□□□ 0.06
UPF1-210ENST00000600689 ZNF90Q03938 601 aa15.41■□□□□ 0.06
UPF1-210ENST00000600689 KRTAP27-1Q3LI81 207 aa15.41■□□□□ 0.06
UPF1-210ENST00000600689 ARRDC1-AS1Q9H2J1 176 aa15.41■□□□□ 0.06
UPF1-210ENST00000600689 F6UZH7 168 aa15.4■□□□□ 0.06
UPF1-210ENST00000600689 SERF1AO75920 110 aa15.4■□□□□ 0.06
UPF1-210ENST00000600689 RAB4AP20338 218 aa15.4■□□□□ 0.06
UPF1-210ENST00000600689 SRD5A2P31213 254 aa15.4■□□□□ 0.06
UPF1-210ENST00000600689 KIAA1644Q3SXP7 199 aa15.4■□□□□ 0.06
UPF1-210ENST00000600689 ARSJQ5FYB0 599 aaPredicted RBP15.4■□□□□ 0.06
UPF1-210ENST00000600689 ZCCHC14Q8WYQ9 949 aaKnown RBP15.4■□□□□ 0.06
UPF1-210ENST00000600689 WDYHV1Q96HA8 205 aa15.4■□□□□ 0.06
UPF1-210ENST00000600689 HES7Q9BYE0 225 aa15.4■□□□□ 0.06
UPF1-210ENST00000600689 LOXL2Q9Y4K0 774 aa15.4■□□□□ 0.06
UPF1-210ENST00000600689 CFAP47Q6ZTR5 3102 aa15.4■□□□□ 0.06
UPF1-210ENST00000600689 SRP14P37108 136 aaKnown RBP15.4■□□□□ 0.06
UPF1-210ENST00000600689 DCAF12Q5T6F0 453 aa15.4■□□□□ 0.06
UPF1-210ENST00000600689 APOBEC3DQ96AK3 386 aaPredicted RBP15.4■□□□□ 0.06
UPF1-210ENST00000600689 SCO2A0A1W2PP80 73 aa15.4■□□□□ 0.06
UPF1-210ENST00000600689 DLEU1O43261 78 aa15.4■□□□□ 0.06
UPF1-210ENST00000600689 NXPH2O95156 264 aa15.4■□□□□ 0.06
UPF1-210ENST00000600689 RPL15P61313 204 aaKnown RBP15.4■□□□□ 0.06
UPF1-210ENST00000600689 RIMS4Q9H426 269 aaPredicted RBP15.4■□□□□ 0.06
UPF1-210ENST00000600689 ZFHX4Q86UP3 3567 aa15.39■□□□□ 0.05
UPF1-210ENST00000600689 TRBV20OR9-2A0A075B6H5 130 aa15.39■□□□□ 0.05
UPF1-210ENST00000600689 MARCH11A6NNE9 402 aa15.39■□□□□ 0.05
UPF1-210ENST00000600689 GNG3P63215 75 aa15.39■□□□□ 0.05
UPF1-210ENST00000600689 ASPHD1Q5U4P2 390 aa15.39■□□□□ 0.05
UPF1-210ENST00000600689 CT55Q8WUE5 264 aa15.39■□□□□ 0.05
UPF1-210ENST00000600689 SSMEM1Q8WWF3 244 aa15.39■□□□□ 0.05
UPF1-210ENST00000600689 PXMP4Q9Y6I8 212 aa15.39■□□□□ 0.05
UPF1-210ENST00000600689 SYNGR4O95473 234 aa15.38■□□□□ 0.05
UPF1-210ENST00000600689 CD82P27701 267 aa15.38■□□□□ 0.05
UPF1-210ENST00000600689 IER3P46695 156 aa15.38■□□□□ 0.05
UPF1-210ENST00000600689 ZNF573Q86YE8 665 aa15.38■□□□□ 0.05
UPF1-210ENST00000600689 Q8NFD4 153 aa15.38■□□□□ 0.05
UPF1-210ENST00000600689 SFRP2Q96HF1 295 aa15.38■□□□□ 0.05
UPF1-210ENST00000600689 SPENQ96T58 3664 aaKnown RBP15.38■□□□□ 0.05
UPF1-210ENST00000600689 PLP2Q04941 152 aa15.38■□□□□ 0.05
UPF1-210ENST00000600689 HLA-DRB5Q30154 266 aa15.38■□□□□ 0.05
UPF1-210ENST00000600689 VKORC1L1Q8N0U8 176 aa15.38■□□□□ 0.05
UPF1-210ENST00000600689 DCAF16Q9NXF7 216 aa15.38■□□□□ 0.05
UPF1-210ENST00000600689 KIAA1549Q9HCM3 1950 aa15.38■□□□□ 0.05
UPF1-210ENST00000600689 COL27A1Q8IZC6 1860 aaPredicted RBP15.37■□□□□ 0.05
UPF1-210ENST00000600689 LRP5LA4QPB2 252 aa15.37■□□□□ 0.05
UPF1-210ENST00000600689 TMEM210A6NLX4 147 aa15.37■□□□□ 0.05
UPF1-210ENST00000600689 LRRC30A6NM36 301 aa15.37■□□□□ 0.05
UPF1-210ENST00000600689 TCF21O43680 179 aa15.37■□□□□ 0.05
UPF1-210ENST00000600689 AESQ08117 197 aa15.37■□□□□ 0.05
UPF1-210ENST00000600689 ALKBH6Q3KRA9 238 aa15.37■□□□□ 0.05
UPF1-210ENST00000600689 COLCA1Q6ZS62 124 aa15.37■□□□□ 0.05
UPF1-210ENST00000600689 H2BFWTQ7Z2G1 175 aa15.37■□□□□ 0.05
UPF1-210ENST00000600689 TUBG2Q9NRH3 451 aa15.37■□□□□ 0.05
UPF1-210ENST00000600689 TMEM106BQ9NUM4 274 aa15.37■□□□□ 0.05
UPF1-210ENST00000600689 RAC2P15153 192 aa15.37■□□□□ 0.05
UPF1-210ENST00000600689 CRISP2P16562 243 aa15.37■□□□□ 0.05
UPF1-210ENST00000600689 PRR31Q5SQ13 230 aa15.37■□□□□ 0.05
UPF1-210ENST00000600689 MRGPRDQ8TDS7 321 aa15.37■□□□□ 0.05
UPF1-210ENST00000600689 BTF3L4Q96K17 158 aa15.37■□□□□ 0.05
UPF1-210ENST00000600689 VAMP8Q9BV40 100 aa15.37■□□□□ 0.05
UPF1-210ENST00000600689 ELOVL5Q9NYP7 299 aa15.37■□□□□ 0.05
UPF1-210ENST00000600689 MT-CO3P00414 261 aa15.37■□□□□ 0.05
UPF1-210ENST00000600689 ARL14EPLP0DKL9 152 aa15.37■□□□□ 0.05
UPF1-210ENST00000600689 ACP1P24666 158 aa15.37■□□□□ 0.05
UPF1-210ENST00000600689 MSMO1Q15800 293 aa15.37■□□□□ 0.05
UPF1-210ENST00000600689 RIPPLY2Q5TAB7 128 aa15.37■□□□□ 0.05
UPF1-210ENST00000600689 ZNF826PQ6ZT77 177 aa15.37■□□□□ 0.05
UPF1-210ENST00000600689 OCC1Q8TAD7 63 aa15.37■□□□□ 0.05
UPF1-210ENST00000600689 C5orf30Q96GV9 206 aa15.37■□□□□ 0.05
UPF1-210ENST00000600689 CTNNBIP1Q9NSA3 81 aaPredicted RBP15.37■□□□□ 0.05
UPF1-210ENST00000600689 KIR2DL5BA0A0G2JN68 375 aa15.36■□□□□ 0.05
UPF1-210ENST00000600689 KIR2DL5BA0A0G2JPC4 375 aa15.36■□□□□ 0.05
UPF1-210ENST00000600689 WNT9BO14905 357 aa15.36■□□□□ 0.05
UPF1-210ENST00000600689 TCL1AP56279 114 aa15.36■□□□□ 0.05
UPF1-210ENST00000600689 SOX8P57073 446 aa15.36■□□□□ 0.05
UPF1-210ENST00000600689 MIC13Q5XKP0 118 aa15.36■□□□□ 0.05
UPF1-210ENST00000600689 CENPVQ7Z7K6 275 aaPredicted RBP15.36■□□□□ 0.05
UPF1-210ENST00000600689 KIR2DL5AQ8N109 375 aa15.36■□□□□ 0.05
UPF1-210ENST00000600689 TP53TG3Q9ULZ0 132 aa15.36■□□□□ 0.05
UPF1-210ENST00000600689 RNF114Q9Y508 228 aa15.36■□□□□ 0.05
UPF1-210ENST00000600689 LNP1A1A4G5 178 aa15.36■□□□□ 0.05
UPF1-210ENST00000600689 FCN1O00602 326 aa15.36■□□□□ 0.05
UPF1-210ENST00000600689 AQP7O14520 342 aa15.36■□□□□ 0.05
UPF1-210ENST00000600689 Q6ZVH6 145 aa15.36■□□□□ 0.05
UPF1-210ENST00000600689 KCNE4Q8WWG9 221 aa15.36■□□□□ 0.05
UPF1-210ENST00000600689 LPAR2Q9HBW0 351 aa15.36■□□□□ 0.05
UPF1-210ENST00000600689 PMCHP20382 165 aa15.35■□□□□ 0.05
UPF1-210ENST00000600689 PCP4P48539 62 aa15.35■□□□□ 0.05
UPF1-210ENST00000600689 C6orf15Q6UXA7 325 aaPredicted RBP15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms