RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 TMEM14EPQ6UXP3 125 aa11.91□□□□□ -0.5
VRK3-217ENST00000599538 ZNF439Q8NDP4 499 aa11.91□□□□□ -0.5
VRK3-217ENST00000599538 DDB2Q92466 427 aa11.91□□□□□ -0.5
VRK3-217ENST00000599538 NGBQ9NPG2 151 aa11.91□□□□□ -0.5
VRK3-217ENST00000599538 TMEM106BQ9NUM4 274 aa11.91□□□□□ -0.5
VRK3-217ENST00000599538 CARHSP1Q9Y2V2 147 aaKnown RBP11.91□□□□□ -0.5
VRK3-217ENST00000599538 TSPAN4O14817 238 aa11.9□□□□□ -0.5
VRK3-217ENST00000599538 DFFBO76075 338 aa11.9□□□□□ -0.5
VRK3-217ENST00000599538 CCL3L1P16619 93 aa11.9□□□□□ -0.5
VRK3-217ENST00000599538 CASP6P55212 293 aa11.9□□□□□ -0.5
VRK3-217ENST00000599538 HNF4GQ14541 408 aa11.9□□□□□ -0.5
VRK3-217ENST00000599538 SPSB3Q6PJ21 355 aa11.9□□□□□ -0.5
VRK3-217ENST00000599538 ST6GALNAC3Q8NDV1 305 aa11.9□□□□□ -0.5
VRK3-217ENST00000599538 SEC11CQ9BY50 192 aa11.9□□□□□ -0.5
VRK3-217ENST00000599538 VSIRQ9H7M9 311 aa11.9□□□□□ -0.5
VRK3-217ENST00000599538 DYNLRB1Q9NP97 96 aa11.9□□□□□ -0.5
VRK3-217ENST00000599538 IDI2-AS1Q9NZ38 188 aa11.9□□□□□ -0.5
VRK3-217ENST00000599538 SLC25A10Q9UBX3 287 aaPredicted RBP11.9□□□□□ -0.5
VRK3-217ENST00000599538 PPIAL4EA0A075B759 164 aa11.9□□□□□ -0.5
VRK3-217ENST00000599538 TRAV38-1A0A0B4J264 116 aa11.9□□□□□ -0.5
VRK3-217ENST00000599538 PPIAL4DF5H284 164 aa11.9□□□□□ -0.5
VRK3-217ENST00000599538 TRIM77I1YAP6 450 aa11.9□□□□□ -0.5
VRK3-217ENST00000599538 PPIAL4FP0DN26 164 aa11.9□□□□□ -0.5
VRK3-217ENST00000599538 NPBWR1P48145 328 aa11.9□□□□□ -0.5
VRK3-217ENST00000599538 GUK1Q16774 197 aa11.9□□□□□ -0.5
VRK3-217ENST00000599538 SSX8Q7RTT4 187 aa11.9□□□□□ -0.5
VRK3-217ENST00000599538 LYG1Q8N1E2 194 aa11.9□□□□□ -0.5
VRK3-217ENST00000599538 DTD1Q8TEA8 209 aa11.9□□□□□ -0.5
VRK3-217ENST00000599538 CORO2AQ92828 525 aa11.9□□□□□ -0.5
VRK3-217ENST00000599538 GNPNAT1Q96EK6 184 aaPredicted RBP11.9□□□□□ -0.5
VRK3-217ENST00000599538 EGLN1Q9GZT9 426 aa11.9□□□□□ -0.5
VRK3-217ENST00000599538 CTSZQ9UBR2 303 aa11.9□□□□□ -0.5
VRK3-217ENST00000599538 PPIAL4AQ9Y536 164 aa11.9□□□□□ -0.5
VRK3-217ENST00000599538 ZNF729A6NN14 1252 aaPredicted RBP11.89□□□□□ -0.51
VRK3-217ENST00000599538 PMS2P5A8MQ11 134 aa11.89□□□□□ -0.51
VRK3-217ENST00000599538 HPRT1P00492 218 aa11.89□□□□□ -0.51
VRK3-217ENST00000599538 CD3EP07766 207 aa11.89□□□□□ -0.51
VRK3-217ENST00000599538 CHRNB4P30926 498 aa11.89□□□□□ -0.51
VRK3-217ENST00000599538 PPT1P50897 306 aa11.89□□□□□ -0.51
VRK3-217ENST00000599538 TAGLNQ01995 201 aaKnown RBP11.89□□□□□ -0.51
VRK3-217ENST00000599538 LY6DQ14210 128 aa11.89□□□□□ -0.51
VRK3-217ENST00000599538 SLC25A24Q6NUK1 477 aa11.89□□□□□ -0.51
VRK3-217ENST00000599538 SVBPQ8N300 66 aa11.89□□□□□ -0.51
VRK3-217ENST00000599538 LILRB2Q8N423 598 aa11.89□□□□□ -0.51
VRK3-217ENST00000599538 CD300LFQ8TDQ1 290 aa11.89□□□□□ -0.51
VRK3-217ENST00000599538 LINC00574Q9H8X3 128 aa11.89□□□□□ -0.51
VRK3-217ENST00000599538 LAMP3Q9UQV4 416 aa11.89□□□□□ -0.51
VRK3-217ENST00000599538 UMAD1C9J7I0 102 aa11.89□□□□□ -0.51
VRK3-217ENST00000599538 TNFRSF13BO14836 293 aaPredicted RBP11.89□□□□□ -0.51
VRK3-217ENST00000599538 IFNA5P01569 189 aa11.89□□□□□ -0.51
VRK3-217ENST00000599538 APOBEC3AP31941 199 aaPredicted RBP11.89□□□□□ -0.51
VRK3-217ENST00000599538 SLC38A11Q08AI6 406 aa11.89□□□□□ -0.51
VRK3-217ENST00000599538 TMEM88Q6PEY1 159 aa11.89□□□□□ -0.51
VRK3-217ENST00000599538 ZNF383Q8NA42 475 aa11.89□□□□□ -0.51
VRK3-217ENST00000599538 S1PR3Q99500 378 aa11.89□□□□□ -0.51
VRK3-217ENST00000599538 RARRES2Q99969 163 aa11.89□□□□□ -0.51
VRK3-217ENST00000599538 EIF5A2Q9GZV4 153 aaKnown RBP11.89□□□□□ -0.51
VRK3-217ENST00000599538 RPUSD1Q9UJJ7 312 aaKnown RBP11.89□□□□□ -0.51
VRK3-217ENST00000599538 PIEZO1Q92508 2521 aa11.88□□□□□ -0.51
VRK3-217ENST00000599538 HRNRQ86YZ3 2850 aaPredicted RBP11.88□□□□□ -0.51
VRK3-217ENST00000599538 NKX6-3A6NJ46 265 aa11.88□□□□□ -0.51
VRK3-217ENST00000599538 LYNX1G3V0Z9 82 aa11.88□□□□□ -0.51
VRK3-217ENST00000599538 PPIHO43447 177 aaKnown RBP11.88□□□□□ -0.51
VRK3-217ENST00000599538 LYNX1P0DP58 116 aa11.88□□□□□ -0.51
VRK3-217ENST00000599538 RAB7AP51149 207 aa11.88□□□□□ -0.51
VRK3-217ENST00000599538 RPL31P62899 125 aaKnown RBP11.88□□□□□ -0.51
VRK3-217ENST00000599538 MRPS11P82912 194 aaKnown RBP11.88□□□□□ -0.51
VRK3-217ENST00000599538 LRRC75BQ2VPJ9 315 aa11.88□□□□□ -0.51
VRK3-217ENST00000599538 SP5Q6BEB4 398 aaPredicted RBP11.88□□□□□ -0.51
VRK3-217ENST00000599538 CISD1Q9NZ45 108 aaKnown RBP11.88□□□□□ -0.51
VRK3-217ENST00000599538 SPTBN1Q01082 2364 aaKnown RBP11.88□□□□□ -0.51
VRK3-217ENST00000599538 UBE2L5PA0A1B0GUS4 154 aa11.87□□□□□ -0.51
VRK3-217ENST00000599538 hADV38S2A0JD32 116 aa11.87□□□□□ -0.51
VRK3-217ENST00000599538 CEBPZOSA8MTT3 80 aa11.87□□□□□ -0.51
VRK3-217ENST00000599538 VSTM5A8MXK1 200 aa11.87□□□□□ -0.51
VRK3-217ENST00000599538 ITGB1BP1O14713 200 aa11.87□□□□□ -0.51
VRK3-217ENST00000599538 EIF3GO75821 320 aaKnown RBP eCLIP11.87□□□□□ -0.51
VRK3-217ENST00000599538 HBG1P69891 147 aa11.87□□□□□ -0.51
VRK3-217ENST00000599538 HBG2P69892 147 aa11.87□□□□□ -0.51
VRK3-217ENST00000599538 FBXL19-AS1Q494R0 122 aa11.87□□□□□ -0.51
VRK3-217ENST00000599538 AKR1C8PQ5T2L2 129 aa11.87□□□□□ -0.51
VRK3-217ENST00000599538 TMEM200BQ69YZ2 307 aa11.87□□□□□ -0.51
VRK3-217ENST00000599538 C1orf87Q8N0U7 546 aa11.87□□□□□ -0.51
VRK3-217ENST00000599538 ZCCHC14Q8WYQ9 949 aaKnown RBP11.87□□□□□ -0.51
VRK3-217ENST00000599538 LINC00312Q9Y6C7 94 aa11.87□□□□□ -0.51
VRK3-217ENST00000599538 TNCP24821 2201 aa11.87□□□□□ -0.51
VRK3-217ENST00000599538 H2AFB1P0C5Y9 115 aa11.87□□□□□ -0.51
VRK3-217ENST00000599538 CBLN2Q8IUK8 224 aa11.87□□□□□ -0.51
VRK3-217ENST00000599538 SCGB1C1Q8TD33 95 aa11.87□□□□□ -0.51
VRK3-217ENST00000599538 H1FXQ92522 213 aaKnown RBP11.87□□□□□ -0.51
VRK3-217ENST00000599538 WDR61Q9GZS3 305 aaKnown RBP11.87□□□□□ -0.51
VRK3-217ENST00000599538 MS4A5Q9H3V2 200 aa11.87□□□□□ -0.51
VRK3-217ENST00000599538 RPRMQ9NS64 109 aa11.87□□□□□ -0.51
VRK3-217ENST00000599538 NDRG3Q9UGV2 375 aa11.87□□□□□ -0.51
VRK3-217ENST00000599538 GAB2Q9UQC2 676 aa11.87□□□□□ -0.51
VRK3-217ENST00000599538 PRELID3BQ9Y3B1 194 aa11.87□□□□□ -0.51
VRK3-217ENST00000599538 HIVEP3Q5T1R4 2406 aa11.87□□□□□ -0.51
VRK3-217ENST00000599538 RBFOX2O43251 390 aaKnown RBP eCLIP11.86□□□□□ -0.51
VRK3-217ENST00000599538 IFNA17P01571 189 aa11.86□□□□□ -0.51
VRK3-217ENST00000599538 RELBQ01201 579 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms