RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	CHD3	Q12873	2000 aa	Known RBP	9.83	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	HLA-H	P01893	362 aa		9.82	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	CHAT	P28329	748 aa		9.82	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	SRD5A2	P31213	254 aa		9.82	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	P2RY1	P47900	373 aa		9.82	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	CLEC12B	Q2HXU8	276 aa		9.82	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	PNPLA5	Q7Z6Z6	429 aa	Predicted RBP	9.82	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	OR5C1	Q8NGR4	320 aa		9.82	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	RNF122	Q9H9V4	155 aa		9.82	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	PSG8	Q9UQ74	426 aa		9.82	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	CSDC2	Q9Y534	153 aa	Known RBP	9.82	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	IFITM10	A6NMD0	228 aa		9.82	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	VENTX	O95231	258 aa		9.82	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	TMEM50A	O95807	157 aa		9.82	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	HIST1H3A	P68431	136 aa		9.82	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	KIAA0141	Q14154	515 aa	Predicted RBP	9.82	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	HIST2H3PS2	Q5TEC6	136 aa		9.82	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	HIST2H3A	Q71DI3	136 aa		9.82	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	OSR2	Q8N2R0	312 aa		9.82	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	PRRG4	Q9BZD6	226 aa		9.82	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	SLC35B3	Q9H1N7	401 aa		9.82	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	OR6C3	Q9NZP0	311 aa		9.82	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	IGKV1D-13	A0A0B4J2D9	117 aa		9.81	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	LOC102725191	A0A1B0GVB3	256 aa		9.81	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	ZNF503-AS2	A6NEH8	195 aa		9.81	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	GPR137B	O60478	399 aa		9.81	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	CXCL1	P09341	107 aa		9.81	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	IGKV1-13	P0DP09	117 aa		9.81	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	WT1	P19544	449 aa	Predicted RBP	9.81	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	RAB7A	P51149	207 aa		9.81	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	ZNF84	P51523	738 aa		9.81	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	ERVK11-1	P61568	191 aa		9.81	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	ASCL5	Q7RTU5	278 aa		9.81	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	AAED1	Q7RTV5	226 aa		9.81	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	CYB561D1	Q8N8Q1	229 aa		9.81	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	OR52L2P	Q8NGH6	319 aa		9.81	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	OR51H1	Q8NH63	302 aa		9.81	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	OR1F12	Q8NHA8	337 aa		9.81	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	FAM110D	Q8TAY7	271 aa	Predicted RBP	9.81	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	ICE1	Q9Y2F5	2266 aa		9.81	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	PPP1R2P9	O14990	202 aa		9.81	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	OR2J3	O76001	311 aa		9.81	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	GAPDH	P04406	335 aa	Known RBP	9.81	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	DYNLT3	P51808	116 aa		9.81	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	RND3	P61587	244 aa		9.81	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	DAZAP2	Q15038	168 aa	Predicted RBP	9.81	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	DEFB109B	Q30KR1	87 aa		9.81	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	FAM27B	Q5VT28	67 aa		9.81	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	LINC01551	Q86U37	167 aa		9.81	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	TBC1D26	Q86UD7	250 aa		9.81	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	ZNF695	Q8IW36	515 aa		9.81	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	ZNF611	Q8N823	705 aa		9.81	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	TTTY12	Q9BZ98	90 aa		9.81	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	TMEM38B	Q9NVV0	291 aa		9.81	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	PCNX1	Q96RV3	2341 aa		9.81	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	C3orf85	A0A1B0GTC6	90 aa		9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	KIAA1324L	A8MWY0	1029 aa	Predicted RBP	9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063		H3BQ15	152 aa		9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	HMGB3	O15347	200 aa	Known RBP	9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	PPY	P01298	95 aa		9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	FGF7	P21781	194 aa		9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	TMEM267	Q0VDI3	215 aa	Predicted RBP	9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	ZNF818P	Q6ZRF7	136 aa		9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	FOXL2NB	Q6ZUU3	175 aa		9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	LGI3	Q8N145	548 aa		9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	GAPT	Q8N292	157 aa		9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	IL1F10	Q8WWZ1	152 aa		9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	RAB39B	Q96DA2	213 aa		9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	P2RX4	Q99571	388 aa		9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	FAM173A	Q9BQD7	235 aa		9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	CCL28	Q9NRJ3	127 aa		9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	B4GALT7	Q9UBV7	327 aa		9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	TLN1	Q9Y490	2541 aa	Known RBP	9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	TIMM8A	O60220	97 aa	Predicted RBP	9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	S1PR2	O95136	353 aa		9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	NKX2-1	P43699	371 aa	Predicted RBP	9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	CDX1	P47902	265 aa	Predicted RBP	9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	TFPI2	P48307	235 aa		9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	GPM6A	P51674	278 aa		9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	ZNF133	P52736	654 aa	Predicted RBP	9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	MRPS34	P82930	218 aa	Known RBP	9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	MALL	Q13021	153 aa		9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	AKR1C8P	Q5T2L2	129 aa		9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	PRR27	Q6MZM9	219 aa		9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	NECAP1	Q8NC96	275 aa		9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	RAX2	Q96IS3	184 aa		9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	C18orf12	Q96KH6	178 aa		9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	FOXB1	Q99853	325 aa		9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	FGF23	Q9GZV9	251 aa	Predicted RBP	9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	PPDPF	Q9H3Y8	114 aa		9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	ZNF286A	Q9HBT8	521 aa		9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	ZFP92	A6NM28	416 aa		9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	MPPED1	O15442	326 aa		9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	SEC11B	P0C7V7	166 aa		9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	BCL3	P20749	454 aa		9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	MEOX1	P50221	254 aa		9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	CENPV	Q7Z7K6	275 aa	Predicted RBP	9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	TMEM251	Q8N6I4	163 aa		9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	FDCSP	Q8NFU4	85 aa		9.8	□□□□□ -0.84
CDK5RAP3-231	ENST00000584063	OR4D5	Q8NGN0	318 aa		9.8	□□□□□ -0.84

Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms