RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 FAM78BQ5VT40 261 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 LPCAT3Q6P1A2 487 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 ZFP1Q6P2D0 407 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 DNAJC24Q6P3W2 148 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 OPN5Q6U736 354 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 PAMR1Q6UXH9 720 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 Q6ZN92 141 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 TEX43Q6ZNM6 134 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 GDPGP1Q6ZNW5 385 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 RASSF6Q6ZTQ3 369 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 HIST2H3AQ71DI3 136 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 GRINAQ7Z429 371 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 VN1R4Q7Z5H5 301 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 PRNTQ86SH4 94 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 SMIM29Q86T20 159 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 ZNF664Q8N3J9 261 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 STX19Q8N4C7 294 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 EIF4E3Q8N5X7 224 aaKnown RBP2.22□□□□□ -2.05
VPS35-209ENST00000568642 DEFB125Q8N687 156 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 CHST4Q8NCG5 386 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 ZNF485Q8NCK3 441 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 OR4M2Q8NGB6 313 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 OR4C6Q8NH72 309 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 GHSRQ92847 366 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 FXYD5Q96DB9 178 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 SEH1LQ96EE3 360 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 MRPL48Q96GC5 212 aaKnown RBP2.22□□□□□ -2.05
VPS35-209ENST00000568642 ATOH8Q96SQ7 321 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 PSMB7Q99436 277 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 ZNF649Q9BS31 505 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 KRTAP2-2Q9BYT5 123 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 ZSCAN16Q9H4T2 348 aaPredicted RBP2.22□□□□□ -2.05
VPS35-209ENST00000568642 DDX31Q9H8H2 851 aaKnown RBP2.22□□□□□ -2.05
VPS35-209ENST00000568642 TPT1P8Q9HAU6 139 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 C14orf105Q9NVL8 296 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 COA4Q9NYJ1 87 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 KCNIP1Q9NZI2 227 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 COMMD9Q9P000 198 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 RAB22AQ9UL26 194 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 UTP11Q9Y3A2 253 aaKnown RBP2.22□□□□□ -2.05
VPS35-209ENST00000568642 HEY1Q9Y5J3 304 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 FREM3P0C091 2139 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 SACSQ9NZJ4 4579 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 PLAC8L1A1L4L8 177 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 OR5H1A6NKK0 313 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 EEF1E1-BLOC1S5C9J1V9 151 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 TSTD3H0UI37 97 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 ISLRO14498 428 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 DLEU1O43261 78 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 EEF1E1O43324 174 aaKnown RBP2.21□□□□□ -2.06
VPS35-209ENST00000568642 ORC5O43913 435 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 DSCAMO60469 2012 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 SUPT3HO75486 399 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 UPK1BO75841 260 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 PIAS1O75925 651 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 OR2J2O76002 312 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 RENP00797 406 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 IGLV2-8P01709 118 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 ALPLP05186 524 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 SERPINA7P05543 415 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 MMP7P09237 267 aaPredicted RBP2.21□□□□□ -2.06
VPS35-209ENST00000568642 DAOP14920 347 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 AKR1C3P42330 323 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 VDAC2P45880 294 aaPredicted RBP2.21□□□□□ -2.06
VPS35-209ENST00000568642 MAP2K4P45985 399 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 SLC25A1P53007 311 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 LINC01547P58512 204 aaPredicted RBP2.21□□□□□ -2.06
VPS35-209ENST00000568642 ERVFC1-1P60608 527 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 HSPE1P61604 102 aaKnown RBP2.21□□□□□ -2.06
VPS35-209ENST00000568642 TIMM10P62072 90 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 RPS24P62847 133 aaKnown RBP2.21□□□□□ -2.06
VPS35-209ENST00000568642 HBG1P69891 147 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 HBG2P69892 147 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 MUC2Q02817 5179 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 SLC10A2Q12908 348 aaPredicted RBP2.21□□□□□ -2.06
VPS35-209ENST00000568642 PMAIP1Q13794 54 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 KIAA0087Q14695 138 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 TSNQ15631 228 aaKnown RBP2.21□□□□□ -2.06
VPS35-209ENST00000568642 NSDHLQ15738 373 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 PRR4Q16378 134 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 SRSF7Q16629 238 aaKnown RBP eCLIP2.21□□□□□ -2.06
VPS35-209ENST00000568642 TCTEX1D4Q5JR98 221 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 FAM201AQ5SY85 155 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 C9orf64Q5T6V5 341 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 IDO2Q6ZQW0 420 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 Q6ZRU5 148 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 FAM19A3Q7Z5A8 133 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 MRPL55Q7Z7F7 128 aaKnown RBP2.21□□□□□ -2.06
VPS35-209ENST00000568642 CBR4Q8N4T8 237 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 C12orf45Q8N5I9 185 aaPredicted RBP2.21□□□□□ -2.06
VPS35-209ENST00000568642 NRACQ8N912 160 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 TMEM178AQ8NBL3 297 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 UBAC2Q8NBM4 344 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 OR4P4Q8NGL7 312 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 LZICQ8WZA0 190 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 DDB2Q92466 427 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 EXOSC8Q96B26 276 aaKnown RBP2.21□□□□□ -2.06
VPS35-209ENST00000568642 GALNT14Q96FL9 552 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 FCRL1Q96LA6 429 aa2.21□□□□□ -2.06
VPS35-209ENST00000568642 METTL26Q96S19 204 aa2.21□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms