RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 MYOD1P15172 320 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 RPL12P30050 165 aaKnown RBP4.5□□□□□ -1.69
VPS13C-209ENST00000560637 SRSF2Q01130 221 aaKnown RBP4.5□□□□□ -1.69
VPS13C-209ENST00000560637 RAB31Q13636 194 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 ZNF146Q15072 292 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 ANKRD55Q3KP44 614 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 LCN15Q6UWW0 184 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 ZNF788Q6ZQV5 615 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 LIAT1Q6ZQX7 453 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 WFDC11Q8NEX6 87 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 OR10P1Q8NGE3 313 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 SSMEM1Q8WWF3 244 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 AKR1E2Q96JD6 320 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 TRAF4Q9BUZ4 470 aaPredicted RBP4.5□□□□□ -1.69
VPS13C-209ENST00000560637 STRAPQ9Y3F4 350 aaKnown RBP4.5□□□□□ -1.69
VPS13C-209ENST00000560637 LINC00312Q9Y6C7 94 aa4.5□□□□□ -1.69
VPS13C-209ENST00000560637 MARCH11A6NNE9 402 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 ZNF705EA8MWA4 302 aaPredicted RBP4.49□□□□□ -1.69
VPS13C-209ENST00000560637 KIAA1324LA8MWY0 1029 aaPredicted RBP4.49□□□□□ -1.69
VPS13C-209ENST00000560637 DIAPH2-AS1Q14236 149 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 GUSBP1Q15486 140 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 Q6P435 159 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 UNQ5815/PRO19632Q6UWF5 114 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 ETV3LQ6ZN32 361 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 ZNF497Q6ZNH5 498 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 C1orf122Q6ZSJ8 110 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 ZNF329Q86UD4 541 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 ZDHHC22Q8N966 263 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 CD300LFQ8TDQ1 290 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 C2orf50Q96LR7 162 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 HSD17B10Q99714 261 aaKnown RBP4.49□□□□□ -1.69
VPS13C-209ENST00000560637 TMEM133Q9H2Q1 129 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 CTNNBIP1Q9NSA3 81 aaPredicted RBP4.49□□□□□ -1.69
VPS13C-209ENST00000560637 RCC2Q9P258 522 aaKnown RBP4.49□□□□□ -1.69
VPS13C-209ENST00000560637 GPR132Q9UNW8 380 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 B4DSR2 109 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 H3BUX3 64 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 GSTZ1O43708 216 aaPredicted RBP4.49□□□□□ -1.69
VPS13C-209ENST00000560637 DUS4LO95620 317 aaKnown RBP4.49□□□□□ -1.69
VPS13C-209ENST00000560637 ORM2P19652 201 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 RAB2AP61019 212 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 EIF5AP63241 154 aaKnown RBP4.49□□□□□ -1.69
VPS13C-209ENST00000560637 ZNF674Q2M3X9 581 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 CR1LQ2VPA4 569 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 MORN2Q502X0 79 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 CST9LP1Q5W188 147 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 EIF5AL1Q6IS14 154 aaKnown RBP4.49□□□□□ -1.69
VPS13C-209ENST00000560637 TMEM182Q6ZP80 229 aaPredicted RBP4.49□□□□□ -1.69
VPS13C-209ENST00000560637 MRPL41Q8IXM3 137 aaKnown RBP4.49□□□□□ -1.69
VPS13C-209ENST00000560637 C11orf53Q8IXP5 236 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 TAF15Q92804 592 aaKnown RBP eCLIP4.49□□□□□ -1.69
VPS13C-209ENST00000560637 SLC35E1Q96K37 410 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 C1orf147Q96MC9 270 aaPredicted RBP4.49□□□□□ -1.69
VPS13C-209ENST00000560637 REG4Q9BYZ8 158 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 SLC25A31Q9H0C2 315 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 TMEM140Q9NV12 185 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 ARHGAP21Q5T5U3 1957 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 E9PQ18 207 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 CTDSPLO15194 276 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 FBP1P09467 338 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 INHBBP09529 407 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 FAM106CPP0CH98 169 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 CD37P11049 281 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 VDAC1P21796 283 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 TFPI2P48307 235 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 PPOXP50336 477 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 HBG1P69891 147 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 HBG2P69892 147 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 SSBP1Q04837 148 aaKnown RBP4.49□□□□□ -1.69
VPS13C-209ENST00000560637 OPCMLQ14982 345 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 Q5BKY6 102 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 TMEM65Q6PI78 240 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 WFDC3Q8IUB2 231 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 OR52M1Q8NGK5 317 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 OR5C1Q8NGR4 320 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 DTD1Q8TEA8 209 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 MSI2Q96DH6 328 aaKnown RBP4.49□□□□□ -1.69
VPS13C-209ENST00000560637 OR10C1Q96KK4 312 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 SSX3Q99909 188 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 MARVELD1Q9BSK0 173 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 JPT1Q9UK76 154 aa4.49□□□□□ -1.69
VPS13C-209ENST00000560637 IGHV2-26A0A0B4J1V2 119 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 FAM90A10PA6NDY2 464 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 FAM90A18PA6NE21 464 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 FAM90A16PA6NEW6 464 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 FAM90A20PA6NIJ5 464 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 FAM90A8PA6NJQ4 464 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 FAM90A7PA6NKC0 464 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 FAM90A22PA8MWA6 464 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 FAM90A12PA8MX19 464 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 FAM90A5PA8MXJ8 464 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 FAM90A23PA8MXZ1 464 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 ZNF207O43670 478 aaKnown RBP4.48□□□□□ -1.69
VPS13C-209ENST00000560637 MED6O75586 246 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 FAM90A15PP0C7V4 464 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 FAM90A13PP0C7W8 464 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 FAM90A14PP0C7W9 464 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 FAM90A24PP0C7X0 464 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 IGHV1-8P0DP01 117 aa4.48□□□□□ -1.69
VPS13C-209ENST00000560637 SAA4P35542 130 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 135.7 ms