RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 APOA2P02652 100 aa11.66□□□□□ -0.54
SHMT2-226ENST00000556825 DPTQ07507 201 aa11.66□□□□□ -0.54
SHMT2-226ENST00000556825 ARL16Q0P5N6 197 aa11.66□□□□□ -0.54
SHMT2-226ENST00000556825 ZNF295-AS1Q8N0V1 137 aa11.66□□□□□ -0.54
SHMT2-226ENST00000556825 TPRX1Q8N7U7 411 aa11.66□□□□□ -0.54
SHMT2-226ENST00000556825 MRPL43Q8N983 215 aaKnown RBP11.66□□□□□ -0.54
SHMT2-226ENST00000556825 OCC1Q8TAD7 63 aa11.66□□□□□ -0.54
SHMT2-226ENST00000556825 BAHD1Q8TBE0 780 aaPredicted RBP11.66□□□□□ -0.54
SHMT2-226ENST00000556825 DOK4Q8TEW6 326 aa11.66□□□□□ -0.54
SHMT2-226ENST00000556825 NUS1Q96E22 293 aa11.66□□□□□ -0.54
SHMT2-226ENST00000556825 GRAMD2BQ96HH9 432 aa11.66□□□□□ -0.54
SHMT2-226ENST00000556825 OR2D2Q9H210 308 aa11.66□□□□□ -0.54
SHMT2-226ENST00000556825 CYSLTR1Q9Y271 337 aa11.66□□□□□ -0.54
SHMT2-226ENST00000556825 PRSS37A4D1T9 235 aa11.65□□□□□ -0.54
SHMT2-226ENST00000556825 TTC9CQ8N5M4 171 aa11.65□□□□□ -0.54
SHMT2-226ENST00000556825 KIR3DL3Q8N743 410 aa11.65□□□□□ -0.54
SHMT2-226ENST00000556825 OR5D13Q8NGL4 314 aa11.65□□□□□ -0.54
SHMT2-226ENST00000556825 OR10G6Q8NH81 332 aa11.65□□□□□ -0.54
SHMT2-226ENST00000556825 C5orf30Q96GV9 206 aa11.65□□□□□ -0.54
SHMT2-226ENST00000556825 TRBV20OR9-2A0A075B6H5 130 aa11.64□□□□□ -0.55
SHMT2-226ENST00000556825 HLA-DQA1P01909 254 aa11.64□□□□□ -0.55
SHMT2-226ENST00000556825 CRYAAP02489 173 aa11.64□□□□□ -0.55
SHMT2-226ENST00000556825 SPINK8P0C7L1 97 aa11.64□□□□□ -0.55
SHMT2-226ENST00000556825 HBG1P69891 147 aa11.64□□□□□ -0.55
SHMT2-226ENST00000556825 HBG2P69892 147 aa11.64□□□□□ -0.55
SHMT2-226ENST00000556825 CX3CL1P78423 397 aa11.64□□□□□ -0.55
SHMT2-226ENST00000556825 TRIP6Q15654 476 aaKnown RBP11.64□□□□□ -0.55
SHMT2-226ENST00000556825 C6orf201Q7Z4U5 140 aa11.64□□□□□ -0.55
SHMT2-226ENST00000556825 OR10G9Q8NGN4 311 aa11.64□□□□□ -0.55
SHMT2-226ENST00000556825 OR10G7Q8NGN6 311 aa11.64□□□□□ -0.55
SHMT2-226ENST00000556825 OR10D3Q8NH80 312 aa11.64□□□□□ -0.55
SHMT2-226ENST00000556825 LMX1AQ8TE12 382 aa11.64□□□□□ -0.55
SHMT2-226ENST00000556825 ANAPC13Q9BS18 74 aa11.64□□□□□ -0.55
SHMT2-226ENST00000556825 VN1R3Q9BXE9 311 aa11.64□□□□□ -0.55
SHMT2-226ENST00000556825 S1PR5Q9H228 398 aa11.64□□□□□ -0.55
SHMT2-226ENST00000556825 LHFPL6Q9Y693 200 aa11.64□□□□□ -0.55
SHMT2-226ENST00000556825 IGKV1-8A0A0C4DH67 115 aa11.64□□□□□ -0.55
SHMT2-226ENST00000556825 ZNF840PA6NDX5 716 aa11.64□□□□□ -0.55
SHMT2-226ENST00000556825 HELTA6NFD8 242 aa11.64□□□□□ -0.55
SHMT2-226ENST00000556825 ATP5G2Q06055 141 aa11.64□□□□□ -0.55
SHMT2-226ENST00000556825 TCEA2Q15560 299 aa11.64□□□□□ -0.55
SHMT2-226ENST00000556825 PRICKLE4Q2TBC4 344 aa11.64□□□□□ -0.55
SHMT2-226ENST00000556825 OR4C12Q96R67 309 aa11.64□□□□□ -0.55
SHMT2-226ENST00000556825 TMEM191AQ9H0A3 160 aa11.64□□□□□ -0.55
SHMT2-226ENST00000556825 CA1P00915 261 aaPredicted RBP11.63□□□□□ -0.55
SHMT2-226ENST00000556825 COX8AP10176 69 aa11.63□□□□□ -0.55
SHMT2-226ENST00000556825 CPMP14384 443 aa11.63□□□□□ -0.55
SHMT2-226ENST00000556825 PLA2G5P39877 138 aa11.63□□□□□ -0.55
SHMT2-226ENST00000556825 MNX1P50219 401 aaPredicted RBP11.63□□□□□ -0.55
SHMT2-226ENST00000556825 PSG7Q13046 419 aa11.63□□□□□ -0.55
SHMT2-226ENST00000556825 FAM53BQ14153 422 aa11.63□□□□□ -0.55
SHMT2-226ENST00000556825 RNPS1Q15287 305 aaKnown RBP11.63□□□□□ -0.55
SHMT2-226ENST00000556825 MLF2Q15773 248 aaPredicted RBP11.63□□□□□ -0.55
SHMT2-226ENST00000556825 SLC35E4Q6ICL7 350 aa11.63□□□□□ -0.55
SHMT2-226ENST00000556825 TMEM251Q8N6I4 163 aa11.63□□□□□ -0.55
SHMT2-226ENST00000556825 OR8B12Q8NGG6 310 aa11.63□□□□□ -0.55
SHMT2-226ENST00000556825 PBOV1Q9GZY1 135 aa11.63□□□□□ -0.55
SHMT2-226ENST00000556825 IL21Q9HBE4 155 aa11.63□□□□□ -0.55
SHMT2-226ENST00000556825 ERRFI1Q9UJM3 462 aaPredicted RBP11.63□□□□□ -0.55
SHMT2-226ENST00000556825 F8W1H4 67 aa11.63□□□□□ -0.55
SHMT2-226ENST00000556825 NKX2-8O15522 239 aa11.63□□□□□ -0.55
SHMT2-226ENST00000556825 CTLA4P16410 223 aa11.63□□□□□ -0.55
SHMT2-226ENST00000556825 F2RP25116 425 aa11.63□□□□□ -0.55
SHMT2-226ENST00000556825 ZNF611Q8N823 705 aa11.63□□□□□ -0.55
SHMT2-226ENST00000556825 TMEM204Q9BSN7 226 aa11.63□□□□□ -0.55
SHMT2-226ENST00000556825 SYS1-DBNDD2H3BUS1 97 aa11.62□□□□□ -0.55
SHMT2-226ENST00000556825 NKX2-2O95096 273 aa11.62□□□□□ -0.55
SHMT2-226ENST00000556825 APCSP02743 223 aa11.62□□□□□ -0.55
SHMT2-226ENST00000556825 AMY1AP04745 511 aa11.62□□□□□ -0.55
SHMT2-226ENST00000556825 HMGA1P17096 107 aaKnown RBP11.62□□□□□ -0.55
SHMT2-226ENST00000556825 ATP5G3P48201 142 aa11.62□□□□□ -0.55
SHMT2-226ENST00000556825 PRDX1Q06830 199 aaKnown RBP11.62□□□□□ -0.55
SHMT2-226ENST00000556825 EIF3IQ13347 325 aaKnown RBP11.62□□□□□ -0.55
SHMT2-226ENST00000556825 DHRS13Q6UX07 377 aa11.62□□□□□ -0.55
SHMT2-226ENST00000556825 OOSP2Q86WS3 158 aa11.62□□□□□ -0.55
SHMT2-226ENST00000556825 CLDN23Q96B33 292 aa11.62□□□□□ -0.55
SHMT2-226ENST00000556825 CRISPLD2Q9H0B8 497 aa11.62□□□□□ -0.55
SHMT2-226ENST00000556825 RALYQ9UKM9 306 aaKnown RBP11.62□□□□□ -0.55
SHMT2-226ENST00000556825 OR1A2Q9Y585 309 aa11.62□□□□□ -0.55
SHMT2-226ENST00000556825 KBTBD11-OT1A0A1B0GTJ5 212 aa11.62□□□□□ -0.55
SHMT2-226ENST00000556825 SP9P0CG40 484 aa11.62□□□□□ -0.55
SHMT2-226ENST00000556825 ATXN8OSP0DMR3 200 aa11.62□□□□□ -0.55
SHMT2-226ENST00000556825 HERV-K104P61576 105 aa11.62□□□□□ -0.55
SHMT2-226ENST00000556825 FOXE3Q13461 319 aa11.62□□□□□ -0.55
SHMT2-226ENST00000556825 C1orf53Q5VUE5 145 aa11.62□□□□□ -0.55
SHMT2-226ENST00000556825 SHISA6Q6ZSJ9 500 aa11.62□□□□□ -0.55
SHMT2-226ENST00000556825 C1QL2Q7Z5L3 287 aa11.62□□□□□ -0.55
SHMT2-226ENST00000556825 TBC1D26Q86UD7 250 aa11.62□□□□□ -0.55
SHMT2-226ENST00000556825 OR2T6Q8NHC8 308 aa11.62□□□□□ -0.55
SHMT2-226ENST00000556825 RLN3Q8WXF3 142 aa11.62□□□□□ -0.55
SHMT2-226ENST00000556825 GGTLC1Q9BX51 225 aa11.62□□□□□ -0.55
SHMT2-226ENST00000556825 B4GALT7Q9UBV7 327 aa11.62□□□□□ -0.55
SHMT2-226ENST00000556825 DOCK11Q5JSL3 2073 aa11.61□□□□□ -0.55
SHMT2-226ENST00000556825 TCF20Q9UGU0 1960 aaKnown RBP11.61□□□□□ -0.55
SHMT2-226ENST00000556825 CEACAM5P06731 702 aa11.61□□□□□ -0.55
SHMT2-226ENST00000556825 CA3P07451 260 aa11.61□□□□□ -0.55
SHMT2-226ENST00000556825 ZNF823P16415 610 aa11.61□□□□□ -0.55
SHMT2-226ENST00000556825 KLF5Q13887 457 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-226ENST00000556825 TIMM23BQ5SRD1 257 aa11.61□□□□□ -0.55
SHMT2-226ENST00000556825 SAMD5Q5TGI4 173 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms