RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 ICAM4Q14773 271 aa12.54□□□□□ -0.4
CUX1-215ENST00000556210 H1FOOQ8IZA3 346 aaPredicted RBP12.54□□□□□ -0.4
CUX1-215ENST00000556210 OR5D13Q8NGL4 314 aa12.54□□□□□ -0.4
CUX1-215ENST00000556210 EGLN1Q9GZT9 426 aa12.54□□□□□ -0.4
CUX1-215ENST00000556210 A0A1W2PRD5 423 aa12.53□□□□□ -0.4
CUX1-215ENST00000556210 A0A1W2PRF3 423 aa12.53□□□□□ -0.4
CUX1-215ENST00000556210 A0A1W2PRM7 423 aa12.53□□□□□ -0.4
CUX1-215ENST00000556210 TMEM50AO95807 157 aa12.53□□□□□ -0.4
CUX1-215ENST00000556210 UCP3P55916 312 aa12.53□□□□□ -0.4
CUX1-215ENST00000556210 MZT1Q08AG7 82 aa12.53□□□□□ -0.4
CUX1-215ENST00000556210 ZNF506Q5JVG8 444 aa12.53□□□□□ -0.4
CUX1-215ENST00000556210 C16orf82Q7Z2V1 217 aa12.53□□□□□ -0.4
CUX1-215ENST00000556210 IL15RAQ13261 267 aa12.53□□□□□ -0.4
CUX1-215ENST00000556210 TMEM45BQ96B21 275 aa12.53□□□□□ -0.4
CUX1-215ENST00000556210 NAT8Q9UHE5 227 aa12.53□□□□□ -0.4
CUX1-215ENST00000556210 TMEM131Q92545 1883 aa12.53□□□□□ -0.4
CUX1-215ENST00000556210 MDFIC2A0A1B0GVS7 189 aa12.53□□□□□ -0.4
CUX1-215ENST00000556210 RPL19P84098 196 aaKnown RBP12.53□□□□□ -0.4
CUX1-215ENST00000556210 FAM27E3Q08E93 113 aa12.53□□□□□ -0.4
CUX1-215ENST00000556210 INO80CQ6PI98 192 aaPredicted RBP12.53□□□□□ -0.4
CUX1-215ENST00000556210 LINC00470Q9BZP3 86 aa12.53□□□□□ -0.4
CUX1-215ENST00000556210 IGHV3-21A0A0B4J1V1 117 aa12.53□□□□□ -0.4
CUX1-215ENST00000556210 TRGV8A0A0C4DH27 118 aa12.53□□□□□ -0.4
CUX1-215ENST00000556210 RPP30P78346 268 aaKnown RBP12.53□□□□□ -0.4
CUX1-215ENST00000556210 TMEM42Q69YG0 159 aa12.53□□□□□ -0.4
CUX1-215ENST00000556210 MRGPRGQ86SM5 289 aa12.53□□□□□ -0.4
CUX1-215ENST00000556210 OR10X1Q8NGY0 326 aa12.53□□□□□ -0.4
CUX1-215ENST00000556210 TRGV10A0A0A0MS01 117 aa12.52□□□□□ -0.4
CUX1-215ENST00000556210 GYPAP02724 150 aa12.52□□□□□ -0.4
CUX1-215ENST00000556210 PLA2G5P39877 138 aa12.52□□□□□ -0.4
CUX1-215ENST00000556210 CDPF1Q6NVV7 123 aa12.52□□□□□ -0.4
CUX1-215ENST00000556210 BAGE3Q86Y29 109 aa12.52□□□□□ -0.4
CUX1-215ENST00000556210 BAGE2Q86Y30 109 aa12.52□□□□□ -0.4
CUX1-215ENST00000556210 OR8G5Q8NG78 346 aa12.52□□□□□ -0.4
CUX1-215ENST00000556210 PCGF1Q9BSM1 259 aa12.52□□□□□ -0.4
CUX1-215ENST00000556210 RTP5Q14D33 572 aa12.52□□□□□ -0.41
CUX1-215ENST00000556210 IQCJQ1A5X6 159 aa12.52□□□□□ -0.41
CUX1-215ENST00000556210 ACSM6Q6P461 480 aa12.52□□□□□ -0.41
CUX1-215ENST00000556210 OR2T10Q8NGZ9 312 aa12.52□□□□□ -0.41
CUX1-215ENST00000556210 GTF3AQ92664 365 aaKnown RBP12.52□□□□□ -0.41
CUX1-215ENST00000556210 WIPI2Q9Y4P8 454 aa12.52□□□□□ -0.41
CUX1-215ENST00000556210 IGHV3-72A0A0B4J1Y9 119 aa12.52□□□□□ -0.41
CUX1-215ENST00000556210 CDC34P49427 236 aaPredicted RBP12.52□□□□□ -0.41
CUX1-215ENST00000556210 FAM78BQ5VT40 261 aa12.52□□□□□ -0.41
CUX1-215ENST00000556210 CLDND2Q8NHS1 167 aa12.52□□□□□ -0.41
CUX1-215ENST00000556210 OR5G3P0C626 314 aa12.51□□□□□ -0.41
CUX1-215ENST00000556210 HOXA6P31267 233 aa12.51□□□□□ -0.41
CUX1-215ENST00000556210 HTD2P86397 168 aa12.51□□□□□ -0.41
CUX1-215ENST00000556210 ACOT6Q3I5F7 207 aaPredicted RBP12.51□□□□□ -0.41
CUX1-215ENST00000556210 PRR27Q6MZM9 219 aa12.51□□□□□ -0.41
CUX1-215ENST00000556210 TGIF2LXQ8IUE1 241 aa12.51□□□□□ -0.41
CUX1-215ENST00000556210 TAF15Q92804 592 aaKnown RBP eCLIP12.51□□□□□ -0.41
CUX1-215ENST00000556210 TAAR6Q96RI8 345 aa12.51□□□□□ -0.41
CUX1-215ENST00000556210 ODAMA1E959 279 aa12.51□□□□□ -0.41
CUX1-215ENST00000556210 FAM3BP58499 235 aaPredicted RBP12.51□□□□□ -0.41
CUX1-215ENST00000556210 GFRALQ6UXV0 394 aa12.51□□□□□ -0.41
CUX1-215ENST00000556210 OR4D5Q8NGN0 318 aa12.51□□□□□ -0.41
CUX1-215ENST00000556210 IL22RA2Q969J5 263 aa12.51□□□□□ -0.41
CUX1-215ENST00000556210 RCC1LQ96I51 464 aaKnown RBP12.51□□□□□ -0.41
CUX1-215ENST00000556210 TNCP24821 2201 aa12.51□□□□□ -0.41
CUX1-215ENST00000556210 MARCH11A6NNE9 402 aa12.51□□□□□ -0.41
CUX1-215ENST00000556210 MRPS11P82912 194 aaKnown RBP12.51□□□□□ -0.41
CUX1-215ENST00000556210 TNFRSF9Q07011 255 aa12.51□□□□□ -0.41
CUX1-215ENST00000556210 STUMQ69YW2 141 aa12.51□□□□□ -0.41
CUX1-215ENST00000556210 C1QL4Q86Z23 238 aa12.51□□□□□ -0.41
CUX1-215ENST00000556210 HIST3H2BBQ8N257 126 aa12.51□□□□□ -0.41
CUX1-215ENST00000556210 TRAPPC1Q9Y5R8 145 aa12.51□□□□□ -0.41
CUX1-215ENST00000556210 FAM208BQ5VWN6 2430 aa12.5□□□□□ -0.41
CUX1-215ENST00000556210 CHD8Q9HCK8 2581 aa12.5□□□□□ -0.41
CUX1-215ENST00000556210 LOC102723971A0A1B0GUV8 181 aa12.5□□□□□ -0.41
CUX1-215ENST00000556210 SLC35B1P78383 322 aa12.5□□□□□ -0.41
CUX1-215ENST00000556210 Q6ZT83 130 aa12.5□□□□□ -0.41
CUX1-215ENST00000556210 OR1P1Q8NH06 330 aa12.5□□□□□ -0.41
CUX1-215ENST00000556210 COMMD5Q9GZQ3 224 aa12.5□□□□□ -0.41
CUX1-215ENST00000556210 CTDSP1Q9GZU7 261 aa12.5□□□□□ -0.41
CUX1-215ENST00000556210 FGF23Q9GZV9 251 aaPredicted RBP12.5□□□□□ -0.41
CUX1-215ENST00000556210 IL36GQ9NZH8 169 aa12.5□□□□□ -0.41
CUX1-215ENST00000556210 MALRD1Q5VYJ5 2156 aa12.5□□□□□ -0.41
CUX1-215ENST00000556210 A0A087WWC5 75 aa12.5□□□□□ -0.41
CUX1-215ENST00000556210 C11orf94C9JXX5 98 aa12.5□□□□□ -0.41
CUX1-215ENST00000556210 SLC31A2O15432 143 aa12.5□□□□□ -0.41
CUX1-215ENST00000556210 MS4A10Q96PG2 267 aa12.5□□□□□ -0.41
CUX1-215ENST00000556210 CIB3Q96Q77 187 aaPredicted RBP12.5□□□□□ -0.41
CUX1-215ENST00000556210 A0A1W2PNU3 283 aaPredicted RBP12.5□□□□□ -0.41
CUX1-215ENST00000556210 MKRN2OSH3BPM6 223 aa12.5□□□□□ -0.41
CUX1-215ENST00000556210 NAPSAO96009 420 aa12.5□□□□□ -0.41
CUX1-215ENST00000556210 PRB4P10163 310 aaPredicted RBP12.5□□□□□ -0.41
CUX1-215ENST00000556210 TFF3Q07654 80 aa12.5□□□□□ -0.41
CUX1-215ENST00000556210 TOMM20LQ6UXN7 152 aa12.5□□□□□ -0.41
CUX1-215ENST00000556210 GATAD1Q8WUU5 269 aa12.5□□□□□ -0.41
CUX1-215ENST00000556210 HSD17B10Q99714 261 aaKnown RBP12.5□□□□□ -0.41
CUX1-215ENST00000556210 TMEM147Q9BVK8 224 aa12.5□□□□□ -0.41
CUX1-215ENST00000556210 RYDENQ9NUL5 291 aaKnown RBP12.5□□□□□ -0.41
CUX1-215ENST00000556210 ANAPC10Q9UM13 185 aa12.5□□□□□ -0.41
CUX1-215ENST00000556210 THBS3P49746 956 aa12.49□□□□□ -0.41
CUX1-215ENST00000556210 GCSAMLQ5JQS6 135 aa12.49□□□□□ -0.41
CUX1-215ENST00000556210 RAB24Q969Q5 203 aa12.49□□□□□ -0.41
CUX1-215ENST00000556210 ATG101Q9BSB4 218 aa12.49□□□□□ -0.41
CUX1-215ENST00000556210 PKIBQ9C010 78 aa12.49□□□□□ -0.41
CUX1-215ENST00000556210 NBEAQ8NFP9 2946 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms