RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-222	ENST00000555774	YPEL1	O60688	119 aa		11.23	□□□□□ -0.61
SHMT2-222	ENST00000555774	PFN1	P07737	140 aa	Known RBP	11.23	□□□□□ -0.61
SHMT2-222	ENST00000555774	KIR2DS2	P43631	304 aa		11.23	□□□□□ -0.61
SHMT2-222	ENST00000555774	SPCS3	P61009	180 aa		11.23	□□□□□ -0.61
SHMT2-222	ENST00000555774	PYY3	Q5JQD4	70 aa		11.23	□□□□□ -0.61
SHMT2-222	ENST00000555774	C16orf82	Q7Z2V1	217 aa		11.23	□□□□□ -0.61
SHMT2-222	ENST00000555774	NEIL1	Q96FI4	390 aa	Predicted RBP	11.23	□□□□□ -0.61
SHMT2-222	ENST00000555774	SNX22	Q96L94	193 aa		11.23	□□□□□ -0.61
SHMT2-222	ENST00000555774	YPEL2	Q96QA6	119 aa		11.23	□□□□□ -0.61
SHMT2-222	ENST00000555774	OR5B12	Q96R08	314 aa		11.23	□□□□□ -0.61
SHMT2-222	ENST00000555774	OR6C3	Q9NZP0	311 aa		11.23	□□□□□ -0.61
SHMT2-222	ENST00000555774	IGHV3-43	A0A0B4J1X8	118 aa		11.23	□□□□□ -0.61
SHMT2-222	ENST00000555774	MGST3	O14880	152 aa		11.23	□□□□□ -0.61
SHMT2-222	ENST00000555774	NKX2-8	O15522	239 aa		11.23	□□□□□ -0.61
SHMT2-222	ENST00000555774	IGHV3-43D	P0DP04	118 aa		11.23	□□□□□ -0.61
SHMT2-222	ENST00000555774	CDC34	P49427	236 aa	Predicted RBP	11.23	□□□□□ -0.61
SHMT2-222	ENST00000555774	OR4F5	Q8NH21	305 aa		11.23	□□□□□ -0.61
SHMT2-222	ENST00000555774	RPUSD4	Q96CM3	377 aa	Known RBP	11.23	□□□□□ -0.61
SHMT2-222	ENST00000555774	OR4F4	Q96R69	305 aa		11.23	□□□□□ -0.61
SHMT2-222	ENST00000555774	SSX3	Q99909	188 aa		11.23	□□□□□ -0.61
SHMT2-222	ENST00000555774	QTRT1	Q9BXR0	403 aa	Known RBP	11.23	□□□□□ -0.61
SHMT2-222	ENST00000555774	ZNF71	Q9NQZ8	489 aa	Predicted RBP	11.23	□□□□□ -0.61
SHMT2-222	ENST00000555774	PITPNC1	Q9UKF7	332 aa		11.23	□□□□□ -0.61
SHMT2-222	ENST00000555774		H7BYZ3	331 aa		11.22	□□□□□ -0.61
SHMT2-222	ENST00000555774	BHLHA15	Q7RTS1	189 aa	Predicted RBP	11.22	□□□□□ -0.61
SHMT2-222	ENST00000555774	TPRX1	Q8N7U7	411 aa		11.22	□□□□□ -0.61
SHMT2-222	ENST00000555774	NCOR1P1	Q9H4R4	102 aa		11.22	□□□□□ -0.61
SHMT2-222	ENST00000555774	RAB9B	Q9NP90	201 aa		11.22	□□□□□ -0.61
SHMT2-222	ENST00000555774	FZR1	Q9UM11	496 aa		11.22	□□□□□ -0.61
SHMT2-222	ENST00000555774	GAB2	Q9UQC2	676 aa		11.22	□□□□□ -0.61
SHMT2-222	ENST00000555774	F2RL2	O00254	374 aa		11.21	□□□□□ -0.61
SHMT2-222	ENST00000555774	ITGB1BP1	O14713	200 aa		11.21	□□□□□ -0.61
SHMT2-222	ENST00000555774	CGA	P01215	116 aa		11.21	□□□□□ -0.61
SHMT2-222	ENST00000555774	SOD3	P08294	240 aa		11.21	□□□□□ -0.61
SHMT2-222	ENST00000555774	OR9G9	P0C7N8	305 aa		11.21	□□□□□ -0.61
SHMT2-222	ENST00000555774	CD1B	P29016	333 aa		11.21	□□□□□ -0.61
SHMT2-222	ENST00000555774	MORN2	Q502X0	79 aa		11.21	□□□□□ -0.61
SHMT2-222	ENST00000555774	LURAP1L	Q8IV03	231 aa		11.21	□□□□□ -0.61
SHMT2-222	ENST00000555774	RFESD	Q8TAC1	157 aa		11.21	□□□□□ -0.61
SHMT2-222	ENST00000555774	GNG12	Q9UBI6	72 aa		11.21	□□□□□ -0.61
SHMT2-222	ENST00000555774	PDE6D	O43924	150 aa		11.21	□□□□□ -0.62
SHMT2-222	ENST00000555774	TNFSF13	O75888	250 aa		11.21	□□□□□ -0.62
SHMT2-222	ENST00000555774	TFF1	P04155	84 aa		11.21	□□□□□ -0.62
SHMT2-222	ENST00000555774	ERVK-16	P61578	105 aa		11.21	□□□□□ -0.62
SHMT2-222	ENST00000555774	EDDM3A	Q14507	147 aa		11.21	□□□□□ -0.62
SHMT2-222	ENST00000555774	PRAMEF5	Q5TYX0	476 aa		11.21	□□□□□ -0.62
SHMT2-222	ENST00000555774	PIP4P1	Q86T03	277 aa		11.21	□□□□□ -0.62
SHMT2-222	ENST00000555774	OR51G1	Q8NGK1	321 aa		11.21	□□□□□ -0.62
SHMT2-222	ENST00000555774	OR10D4P	Q8NGN7	298 aa		11.21	□□□□□ -0.62
SHMT2-222	ENST00000555774	OR4A16	Q8NH70	328 aa		11.21	□□□□□ -0.62
SHMT2-222	ENST00000555774	TXNDC17	Q9BRA2	123 aa		11.21	□□□□□ -0.62
SHMT2-222	ENST00000555774	SLC25A15	Q9Y619	301 aa		11.21	□□□□□ -0.62
SHMT2-222	ENST00000555774	IGKV1D-17	A0A075B6S4	117 aa		11.2	□□□□□ -0.62
SHMT2-222	ENST00000555774	DEFB108A	A8MXU0	73 aa		11.2	□□□□□ -0.62
SHMT2-222	ENST00000555774	FCGR3B	O75015	233 aa		11.2	□□□□□ -0.62
SHMT2-222	ENST00000555774	HRAS	P01112	189 aa		11.2	□□□□□ -0.62
SHMT2-222	ENST00000555774	EGR1	P18146	543 aa		11.2	□□□□□ -0.62
SHMT2-222	ENST00000555774	SRP14	P37108	136 aa	Known RBP	11.2	□□□□□ -0.62
SHMT2-222	ENST00000555774	GALR1	P47211	349 aa		11.2	□□□□□ -0.62
SHMT2-222	ENST00000555774	TMPRSS3	P57727	454 aa		11.2	□□□□□ -0.62
SHMT2-222	ENST00000555774	HOXA4	Q00056	320 aa	Predicted RBP	11.2	□□□□□ -0.62
SHMT2-222	ENST00000555774		Q8N7P7	452 aa		11.2	□□□□□ -0.62
SHMT2-222	ENST00000555774	OR2Z1	Q8NG97	314 aa		11.2	□□□□□ -0.62
SHMT2-222	ENST00000555774	S100PBP	Q96BU1	408 aa		11.2	□□□□□ -0.62
SHMT2-222	ENST00000555774	STARD4	Q96DR4	205 aa		11.2	□□□□□ -0.62
SHMT2-222	ENST00000555774	GPR61	Q9BZJ8	451 aa		11.2	□□□□□ -0.62
SHMT2-222	ENST00000555774	HMGB3	O15347	200 aa	Known RBP	11.2	□□□□□ -0.62
SHMT2-222	ENST00000555774	PAGE4	O60829	102 aa		11.2	□□□□□ -0.62
SHMT2-222	ENST00000555774	GYPA	P02724	150 aa		11.2	□□□□□ -0.62
SHMT2-222	ENST00000555774	OPRK1	P41145	380 aa		11.2	□□□□□ -0.62
SHMT2-222	ENST00000555774	FAM3B	P58499	235 aa	Predicted RBP	11.2	□□□□□ -0.62
SHMT2-222	ENST00000555774	C3orf36	Q3SXR2	165 aa		11.2	□□□□□ -0.62
SHMT2-222	ENST00000555774	PFDN5	Q99471	154 aa		11.2	□□□□□ -0.62
SHMT2-222	ENST00000555774	KCNIP2	Q9NS61	270 aa		11.2	□□□□□ -0.62
SHMT2-222	ENST00000555774	DMD	P11532	3685 aa		11.19	□□□□□ -0.62
SHMT2-222	ENST00000555774	TRGV8	A0A0C4DH27	118 aa		11.19	□□□□□ -0.62
SHMT2-222	ENST00000555774	MBD3L4	A6NDZ8	208 aa	Predicted RBP	11.19	□□□□□ -0.62
SHMT2-222	ENST00000555774	MBD3L3	A6NE82	208 aa	Predicted RBP	11.19	□□□□□ -0.62
SHMT2-222	ENST00000555774	MBD3L5	A6NJ08	208 aa	Predicted RBP	11.19	□□□□□ -0.62
SHMT2-222	ENST00000555774	ZNF729	A6NN14	1252 aa	Predicted RBP	11.19	□□□□□ -0.62
SHMT2-222	ENST00000555774	C11orf94	C9JXX5	98 aa		11.19	□□□□□ -0.62
SHMT2-222	ENST00000555774		F6UZH7	168 aa		11.19	□□□□□ -0.62
SHMT2-222	ENST00000555774		M0R1X1	148 aa		11.19	□□□□□ -0.62
SHMT2-222	ENST00000555774	PROP1	O75360	226 aa		11.19	□□□□□ -0.62
SHMT2-222	ENST00000555774	CD99	P14209	185 aa		11.19	□□□□□ -0.62
SHMT2-222	ENST00000555774	VDAC2	P45880	294 aa	Predicted RBP	11.19	□□□□□ -0.62
SHMT2-222	ENST00000555774	RAB7A	P51149	207 aa		11.19	□□□□□ -0.62
SHMT2-222	ENST00000555774	TLE1	Q04724	770 aa		11.19	□□□□□ -0.62
SHMT2-222	ENST00000555774	HNF4G	Q14541	408 aa		11.19	□□□□□ -0.62
SHMT2-222	ENST00000555774	OR4X1	Q8NH49	305 aa		11.19	□□□□□ -0.62
SHMT2-222	ENST00000555774	MBD3L2	Q8NHZ7	208 aa	Predicted RBP	11.19	□□□□□ -0.62
SHMT2-222	ENST00000555774	BTF3L4	Q96K17	158 aa		11.19	□□□□□ -0.62
SHMT2-222	ENST00000555774	DCTN5	Q9BTE1	182 aa		11.19	□□□□□ -0.62
SHMT2-222	ENST00000555774	OPN3	Q9H1Y3	402 aa	Predicted RBP	11.19	□□□□□ -0.62
SHMT2-222	ENST00000555774	TRAV20	A0A0B4J274	112 aa		11.19	□□□□□ -0.62
SHMT2-222	ENST00000555774	PPP5D1	E7EU14	171 aa		11.19	□□□□□ -0.62
SHMT2-222	ENST00000555774	TMPRSS2	O15393	492 aa		11.19	□□□□□ -0.62
SHMT2-222	ENST00000555774	IGHV3-13	P01766	116 aa		11.19	□□□□□ -0.62
SHMT2-222	ENST00000555774	SPINK9	Q5DT21	86 aa		11.19	□□□□□ -0.62
SHMT2-222	ENST00000555774	COA6	Q5JTJ3	125 aa	Known RBP	11.19	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms