RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 ZNF883P0CG24 379 aa12.36□□□□□ -0.43
HOXC11-202ENST00000546378 RAB40CQ96S21 281 aa12.36□□□□□ -0.43
HOXC11-202ENST00000546378 RNF115Q9Y4L5 304 aa12.36□□□□□ -0.43
HOXC11-202ENST00000546378 GJE1A6NN92 205 aa12.36□□□□□ -0.43
HOXC11-202ENST00000546378 DMRTA1Q5VZB9 504 aa12.36□□□□□ -0.43
HOXC11-202ENST00000546378 FADS6Q8N9I5 356 aa12.36□□□□□ -0.43
HOXC11-202ENST00000546378 DTD1Q8TEA8 209 aa12.36□□□□□ -0.43
HOXC11-202ENST00000546378 TMEM56Q96MV1 263 aa12.36□□□□□ -0.43
HOXC11-202ENST00000546378 MANBALQ9NQG1 85 aa12.36□□□□□ -0.43
HOXC11-202ENST00000546378 KCNIP1Q9NZI2 227 aa12.36□□□□□ -0.43
HOXC11-202ENST00000546378 TMEM56-RWDD3S4R434 201 aa12.36□□□□□ -0.43
HOXC11-202ENST00000546378 ELOA3CA0A087WX78 387 aaPredicted RBP12.35□□□□□ -0.43
HOXC11-202ENST00000546378 NPIPB13A6NJU9 1138 aa12.35□□□□□ -0.43
HOXC11-202ENST00000546378 NPIPB4C9JG80 1138 aa12.35□□□□□ -0.43
HOXC11-202ENST00000546378 TCF21O43680 179 aa12.35□□□□□ -0.43
HOXC11-202ENST00000546378 NPSP0C0P6 89 aa12.35□□□□□ -0.43
HOXC11-202ENST00000546378 IL3RAP26951 378 aa12.35□□□□□ -0.43
HOXC11-202ENST00000546378 CNN1P51911 297 aaKnown RBP12.35□□□□□ -0.43
HOXC11-202ENST00000546378 FAM201AQ5SY85 155 aa12.35□□□□□ -0.43
HOXC11-202ENST00000546378 NAV3Q8IVL0 2385 aa12.35□□□□□ -0.43
HOXC11-202ENST00000546378 ZNF716A6NP11 495 aa12.35□□□□□ -0.43
HOXC11-202ENST00000546378 B4E171 279 aa12.35□□□□□ -0.43
HOXC11-202ENST00000546378 H0Y980 276 aa12.35□□□□□ -0.43
HOXC11-202ENST00000546378 CDKN1AP38936 164 aa12.35□□□□□ -0.43
HOXC11-202ENST00000546378 TSPAN7P41732 249 aa12.35□□□□□ -0.43
HOXC11-202ENST00000546378 CDC34P49427 236 aaPredicted RBP12.35□□□□□ -0.43
HOXC11-202ENST00000546378 PPP1CBP62140 327 aa12.35□□□□□ -0.43
HOXC11-202ENST00000546378 PRB3Q04118 309 aaPredicted RBP12.35□□□□□ -0.43
HOXC11-202ENST00000546378 PCSK4Q6UW60 755 aa12.35□□□□□ -0.43
HOXC11-202ENST00000546378 ZNF295-AS1Q8N0V1 137 aa12.35□□□□□ -0.43
HOXC11-202ENST00000546378 WDR54Q9H977 334 aa12.35□□□□□ -0.43
HOXC11-202ENST00000546378 SCO2A0A1W2PP80 73 aa12.35□□□□□ -0.43
HOXC11-202ENST00000546378 ODAMA1E959 279 aa12.35□□□□□ -0.43
HOXC11-202ENST00000546378 A8MWP6 167 aa12.35□□□□□ -0.43
HOXC11-202ENST00000546378 FCN1O00602 326 aa12.35□□□□□ -0.43
HOXC11-202ENST00000546378 S100A7P31151 101 aa12.35□□□□□ -0.43
HOXC11-202ENST00000546378 PRAMEF5Q5TYX0 476 aa12.35□□□□□ -0.43
HOXC11-202ENST00000546378 ABHD17BQ5VST6 288 aa12.35□□□□□ -0.43
HOXC11-202ENST00000546378 ZNF292O60281 2723 aa12.34□□□□□ -0.43
HOXC11-202ENST00000546378 F6UZH7 168 aa12.34□□□□□ -0.43
HOXC11-202ENST00000546378 DAZAP2Q15038 168 aaPredicted RBP12.34□□□□□ -0.43
HOXC11-202ENST00000546378 JOSD1Q15040 202 aaPredicted RBP12.34□□□□□ -0.43
HOXC11-202ENST00000546378 KCNMB1Q16558 191 aa12.34□□□□□ -0.43
HOXC11-202ENST00000546378 DBX2Q6ZNG2 339 aa12.34□□□□□ -0.43
HOXC11-202ENST00000546378 PPP1R32Q7Z5V6 425 aa12.34□□□□□ -0.43
HOXC11-202ENST00000546378 OR5A2Q8NGI9 324 aa12.34□□□□□ -0.43
HOXC11-202ENST00000546378 ST6GALNAC6Q969X2 333 aa12.34□□□□□ -0.43
HOXC11-202ENST00000546378 CISD1Q9NZ45 108 aaKnown RBP12.34□□□□□ -0.43
HOXC11-202ENST00000546378 RNF24Q9Y225 148 aa12.34□□□□□ -0.43
HOXC11-202ENST00000546378 CLDN14O95500 239 aa12.34□□□□□ -0.43
HOXC11-202ENST00000546378 KCNIP4Q6PIL6 250 aa12.34□□□□□ -0.43
HOXC11-202ENST00000546378 GGNQ86UU5 652 aa12.34□□□□□ -0.43
HOXC11-202ENST00000546378 DOLPP1Q86YN1 238 aa12.34□□□□□ -0.43
HOXC11-202ENST00000546378 IMMP1LQ96LU5 166 aa12.34□□□□□ -0.43
HOXC11-202ENST00000546378 ACTR3CQ9C0K3 210 aaPredicted RBP12.34□□□□□ -0.43
HOXC11-202ENST00000546378 TP73-AS1Q9UF72 201 aa12.34□□□□□ -0.43
HOXC11-202ENST00000546378 METRNQ9UJH8 293 aa12.34□□□□□ -0.43
HOXC11-202ENST00000546378 RELNP78509 3460 aa12.34□□□□□ -0.43
HOXC11-202ENST00000546378 PSPNO60542 156 aa12.33□□□□□ -0.44
HOXC11-202ENST00000546378 COX5AP20674 150 aa12.33□□□□□ -0.44
HOXC11-202ENST00000546378 ERVFC1-1P60608 527 aa12.33□□□□□ -0.44
HOXC11-202ENST00000546378 HTD2P86397 168 aa12.33□□□□□ -0.44
HOXC11-202ENST00000546378 Q0VFX4 171 aa12.33□□□□□ -0.44
HOXC11-202ENST00000546378 CEACAM21Q3KPI0 293 aa12.33□□□□□ -0.44
HOXC11-202ENST00000546378 MDP1Q86V88 176 aa12.33□□□□□ -0.44
HOXC11-202ENST00000546378 LRTM2Q8N967 370 aa12.33□□□□□ -0.44
HOXC11-202ENST00000546378 FAM216AQ8WUB2 273 aa12.33□□□□□ -0.44
HOXC11-202ENST00000546378 YPEL4Q96NS1 127 aa12.33□□□□□ -0.44
HOXC11-202ENST00000546378 SSBP3Q9BWW4 388 aaPredicted RBP12.33□□□□□ -0.44
HOXC11-202ENST00000546378 KIAA1549Q9HCM3 1950 aa12.33□□□□□ -0.44
HOXC11-202ENST00000546378 NOTCH3Q9UM47 2321 aa12.33□□□□□ -0.44
HOXC11-202ENST00000546378 PLAUP00749 431 aa12.33□□□□□ -0.44
HOXC11-202ENST00000546378 HRASP01112 189 aa12.33□□□□□ -0.44
HOXC11-202ENST00000546378 IGHEP01854 428 aa12.33□□□□□ -0.44
HOXC11-202ENST00000546378 ZNF585BQ52M93 769 aa12.33□□□□□ -0.44
HOXC11-202ENST00000546378 SPATA31B1PQ5VZV4 182 aa12.33□□□□□ -0.44
HOXC11-202ENST00000546378 CMTM2Q8TAZ6 248 aa12.33□□□□□ -0.44
HOXC11-202ENST00000546378 NEIL1Q96FI4 390 aaPredicted RBP12.33□□□□□ -0.44
HOXC11-202ENST00000546378 ASH1LQ9NR48 2969 aaKnown RBP12.33□□□□□ -0.44
HOXC11-202ENST00000546378 H3BTX0 84 aa12.33□□□□□ -0.44
HOXC11-202ENST00000546378 KBTBD11O94819 623 aa12.33□□□□□ -0.44
HOXC11-202ENST00000546378 FTH1P19P0C7X4 201 aa12.33□□□□□ -0.44
HOXC11-202ENST00000546378 ARL14EPLP0DKL9 152 aa12.33□□□□□ -0.44
HOXC11-202ENST00000546378 ADMP35318 185 aa12.33□□□□□ -0.44
HOXC11-202ENST00000546378 GNG3P63215 75 aa12.33□□□□□ -0.44
HOXC11-202ENST00000546378 TNFRSF9Q07011 255 aa12.33□□□□□ -0.44
HOXC11-202ENST00000546378 TXN2Q99757 166 aa12.33□□□□□ -0.44
HOXC11-202ENST00000546378 LRP5LA4QPB2 252 aa12.32□□□□□ -0.44
HOXC11-202ENST00000546378 IRF2P14316 349 aa12.32□□□□□ -0.44
HOXC11-202ENST00000546378 GNG10P50151 68 aa12.32□□□□□ -0.44
HOXC11-202ENST00000546378 SRSF6Q13247 344 aaKnown RBP12.32□□□□□ -0.44
HOXC11-202ENST00000546378 QTRT1Q9BXR0 403 aaKnown RBP12.32□□□□□ -0.44
HOXC11-202ENST00000546378 SRD5A3Q9H8P0 318 aa12.32□□□□□ -0.44
HOXC11-202ENST00000546378 IQCJQ1A5X6 159 aa12.32□□□□□ -0.44
HOXC11-202ENST00000546378 LRRC75BQ2VPJ9 315 aa12.32□□□□□ -0.44
HOXC11-202ENST00000546378 MOB3BQ86TA1 216 aa12.32□□□□□ -0.44
HOXC11-202ENST00000546378 APOBEC3DQ96AK3 386 aaPredicted RBP12.32□□□□□ -0.44
HOXC11-202ENST00000546378 CDH20Q9HBT6 801 aa12.32□□□□□ -0.44
HOXC11-202ENST00000546378 NAGKQ9UJ70 344 aa12.32□□□□□ -0.44
HOXC11-202ENST00000546378 SNURFLB1AK76 121 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms