RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-223	ENST00000544669	IGHV1-18	A0A0C4DH31	117 aa		10.86	□□□□□ -0.67
CPSF7-223	ENST00000544669	FNDC10	F2Z333	226 aa		10.86	□□□□□ -0.67
CPSF7-223	ENST00000544669	AGFG2	O95081	481 aa		10.86	□□□□□ -0.67
CPSF7-223	ENST00000544669	CRYAA	P02489	173 aa		10.86	□□□□□ -0.67
CPSF7-223	ENST00000544669	GLRX	P35754	106 aa		10.86	□□□□□ -0.67
CPSF7-223	ENST00000544669	LCN2	P80188	198 aa		10.86	□□□□□ -0.67
CPSF7-223	ENST00000544669	PMP22	Q01453	160 aa		10.86	□□□□□ -0.67
CPSF7-223	ENST00000544669	FOXF2	Q12947	444 aa		10.86	□□□□□ -0.67
CPSF7-223	ENST00000544669	ATP1A1-AS1	Q5TC04	95 aa		10.86	□□□□□ -0.67
CPSF7-223	ENST00000544669	FAM180A	Q6UWF9	173 aa		10.86	□□□□□ -0.67
CPSF7-223	ENST00000544669		Q6ZR03	302 aa		10.86	□□□□□ -0.67
CPSF7-223	ENST00000544669	OR4F5	Q8NH21	305 aa		10.86	□□□□□ -0.67
CPSF7-223	ENST00000544669	OR4S2	Q8NH73	311 aa		10.86	□□□□□ -0.67
CPSF7-223	ENST00000544669	OR4F4	Q96R69	305 aa		10.86	□□□□□ -0.67
CPSF7-223	ENST00000544669	UFSP2	Q9NUQ7	469 aa		10.86	□□□□□ -0.67
CPSF7-223	ENST00000544669	SLC25A15	Q9Y619	301 aa		10.86	□□□□□ -0.67
CPSF7-223	ENST00000544669	TRIO	O75962	3097 aa		10.86	□□□□□ -0.67
CPSF7-223	ENST00000544669	NKX2-8	O15522	239 aa		10.86	□□□□□ -0.67
CPSF7-223	ENST00000544669	HRAS	P01112	189 aa		10.86	□□□□□ -0.67
CPSF7-223	ENST00000544669	CGA	P01215	116 aa		10.86	□□□□□ -0.67
CPSF7-223	ENST00000544669	IFNA10	P01566	189 aa		10.86	□□□□□ -0.67
CPSF7-223	ENST00000544669	THBS3	P49746	956 aa		10.86	□□□□□ -0.67
CPSF7-223	ENST00000544669	BRWD1-AS2	P59051	145 aa		10.86	□□□□□ -0.67
CPSF7-223	ENST00000544669	OR2B11	Q5JQS5	317 aa		10.86	□□□□□ -0.67
CPSF7-223	ENST00000544669	VWA1	Q6PCB0	445 aa		10.86	□□□□□ -0.67
CPSF7-223	ENST00000544669	SSX8	Q7RTT4	187 aa		10.86	□□□□□ -0.67
CPSF7-223	ENST00000544669	LURAP1L	Q8IV03	231 aa		10.86	□□□□□ -0.67
CPSF7-223	ENST00000544669	OR2Z1	Q8NG97	314 aa		10.86	□□□□□ -0.67
CPSF7-223	ENST00000544669	STARD4	Q96DR4	205 aa		10.86	□□□□□ -0.67
CPSF7-223	ENST00000544669	PARL	Q9H300	379 aa		10.86	□□□□□ -0.67
CPSF7-223	ENST00000544669	HEYL	Q9NQ87	328 aa	Predicted RBP	10.86	□□□□□ -0.67
CPSF7-223	ENST00000544669	TRIOBP	Q9H2D6	2365 aa		10.85	□□□□□ -0.67
CPSF7-223	ENST00000544669	GATC	O43716	136 aa	Known RBP	10.85	□□□□□ -0.67
CPSF7-223	ENST00000544669	FCGR3B	O75015	233 aa		10.85	□□□□□ -0.67
CPSF7-223	ENST00000544669	CEACAM4	O75871	244 aa		10.85	□□□□□ -0.67
CPSF7-223	ENST00000544669	PFN1	P07737	140 aa	Known RBP	10.85	□□□□□ -0.67
CPSF7-223	ENST00000544669	TRGC1	P0CF51	173 aa		10.85	□□□□□ -0.67
CPSF7-223	ENST00000544669	SPINK2	P20155	84 aa		10.85	□□□□□ -0.67
CPSF7-223	ENST00000544669	SSTR5	P35346	364 aa		10.85	□□□□□ -0.67
CPSF7-223	ENST00000544669	GATA4	P43694	442 aa		10.85	□□□□□ -0.67
CPSF7-223	ENST00000544669	GALR1	P47211	349 aa		10.85	□□□□□ -0.67
CPSF7-223	ENST00000544669	NUBP1	P53384	320 aa		10.85	□□□□□ -0.67
CPSF7-223	ENST00000544669	KLF3	P57682	345 aa	Predicted RBP	10.85	□□□□□ -0.67
CPSF7-223	ENST00000544669	RPL23	P62829	140 aa	Known RBP	10.85	□□□□□ -0.67
CPSF7-223	ENST00000544669	HNF4G	Q14541	408 aa		10.85	□□□□□ -0.67
CPSF7-223	ENST00000544669	BTNL3	Q6UXE8	466 aa		10.85	□□□□□ -0.67
CPSF7-223	ENST00000544669	SSX7	Q7RTT5	188 aa		10.85	□□□□□ -0.67
CPSF7-223	ENST00000544669	CISD2	Q8N5K1	135 aa	Known RBP	10.85	□□□□□ -0.67
CPSF7-223	ENST00000544669	CD177	Q8N6Q3	437 aa		10.85	□□□□□ -0.67
CPSF7-223	ENST00000544669	SFXN3	Q9BWM7	321 aa		10.85	□□□□□ -0.67
CPSF7-223	ENST00000544669	FAM234A	Q9H0X4	552 aa		10.85	□□□□□ -0.67
CPSF7-223	ENST00000544669	SLC25A22	Q9H936	323 aa		10.85	□□□□□ -0.67
CPSF7-223	ENST00000544669	MSL2	Q9HCI7	577 aa		10.85	□□□□□ -0.67
CPSF7-223	ENST00000544669	ENY2	Q9NPA8	101 aa		10.85	□□□□□ -0.67
CPSF7-223	ENST00000544669		R4GN57	208 aa		10.85	□□□□□ -0.67
CPSF7-223	ENST00000544669	FREM1	Q5H8C1	2179 aa		10.84	□□□□□ -0.67
CPSF7-223	ENST00000544669	LINC00473	A8K010	186 aa		10.84	□□□□□ -0.67
CPSF7-223	ENST00000544669	C15orf62	A8K5M9	175 aa		10.84	□□□□□ -0.67
CPSF7-223	ENST00000544669	C11orf94	C9JXX5	98 aa		10.84	□□□□□ -0.67
CPSF7-223	ENST00000544669	TMPRSS2	O15393	492 aa		10.84	□□□□□ -0.67
CPSF7-223	ENST00000544669	ST8SIA5	O15466	376 aa		10.84	□□□□□ -0.67
CPSF7-223	ENST00000544669	TNFSF13	O75888	250 aa		10.84	□□□□□ -0.67
CPSF7-223	ENST00000544669	YIF1A	O95070	293 aa		10.84	□□□□□ -0.67
CPSF7-223	ENST00000544669	CXorf1	O96002	111 aa		10.84	□□□□□ -0.67
CPSF7-223	ENST00000544669	IGKV1D-33	P01593	117 aa		10.84	□□□□□ -0.67
CPSF7-223	ENST00000544669	IGKV1-33	P01594	117 aa		10.84	□□□□□ -0.67
CPSF7-223	ENST00000544669	IGHV2-70	P01814	119 aa		10.84	□□□□□ -0.67
CPSF7-223	ENST00000544669	TNFSF4	P23510	183 aa		10.84	□□□□□ -0.67
CPSF7-223	ENST00000544669	IGFL3	Q6UXB1	125 aa		10.84	□□□□□ -0.67
CPSF7-223	ENST00000544669	HIST3H2BB	Q8N257	126 aa		10.84	□□□□□ -0.67
CPSF7-223	ENST00000544669	OR51G1	Q8NGK1	321 aa		10.84	□□□□□ -0.67
CPSF7-223	ENST00000544669	RPUSD4	Q96CM3	377 aa	Known RBP	10.84	□□□□□ -0.67
CPSF7-223	ENST00000544669	C5orf30	Q96GV9	206 aa		10.84	□□□□□ -0.67
CPSF7-223	ENST00000544669	NPVF	Q9HCQ7	196 aa		10.84	□□□□□ -0.67
CPSF7-223	ENST00000544669		M0R1X1	148 aa		10.84	□□□□□ -0.67
CPSF7-223	ENST00000544669	TM4SF5	O14894	197 aa		10.84	□□□□□ -0.67
CPSF7-223	ENST00000544669	TYMS	P04818	313 aa		10.84	□□□□□ -0.67
CPSF7-223	ENST00000544669	CD55	P08174	381 aa		10.84	□□□□□ -0.67
CPSF7-223	ENST00000544669	EDDM3A	Q14507	147 aa		10.84	□□□□□ -0.67
CPSF7-223	ENST00000544669	COA6	Q5JTJ3	125 aa	Known RBP	10.84	□□□□□ -0.67
CPSF7-223	ENST00000544669	C16orf82	Q7Z2V1	217 aa		10.84	□□□□□ -0.67
CPSF7-223	ENST00000544669	RFESD	Q8TAC1	157 aa		10.84	□□□□□ -0.67
CPSF7-223	ENST00000544669	ASCL3	Q9NQ33	180 aa		10.84	□□□□□ -0.67
CPSF7-223	ENST00000544669	GFOD1	Q9NXC2	390 aa		10.84	□□□□□ -0.67
CPSF7-223	ENST00000544669	ARL2-SNX15	V9GYD0	113 aa		10.84	□□□□□ -0.67
CPSF7-223	ENST00000544669	LAMA1	P25391	3075 aa		10.83	□□□□□ -0.68
CPSF7-223	ENST00000544669	TECTA	O75443	2155 aa		10.83	□□□□□ -0.68
CPSF7-223	ENST00000544669	ZNF729	A6NN14	1252 aa	Predicted RBP	10.83	□□□□□ -0.68
CPSF7-223	ENST00000544669	PAGE4	O60829	102 aa		10.83	□□□□□ -0.68
CPSF7-223	ENST00000544669	LHB	P01229	141 aa		10.83	□□□□□ -0.68
CPSF7-223	ENST00000544669	CRYAB	P02511	175 aa	Known RBP	10.83	□□□□□ -0.68
CPSF7-223	ENST00000544669	RPL19	P84098	196 aa	Known RBP	10.83	□□□□□ -0.68
CPSF7-223	ENST00000544669	TMEM183A	Q8IXX5	376 aa		10.83	□□□□□ -0.68
CPSF7-223	ENST00000544669	OR2T10	Q8NGZ9	312 aa		10.83	□□□□□ -0.68
CPSF7-223	ENST00000544669	FRZB	Q92765	325 aa		10.83	□□□□□ -0.68
CPSF7-223	ENST00000544669	ZDHHC16	Q969W1	377 aa		10.83	□□□□□ -0.68
CPSF7-223	ENST00000544669	QTRT1	Q9BXR0	403 aa	Known RBP	10.83	□□□□□ -0.68
CPSF7-223	ENST00000544669	FKBP11	Q9NYL4	201 aa		10.83	□□□□□ -0.68
CPSF7-223	ENST00000544669	IGKV1D-17	A0A075B6S4	117 aa		10.82	□□□□□ -0.68
CPSF7-223	ENST00000544669	TRAV9-1	A0A075B6T8	112 aa		10.82	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms