RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 FSCN3Q9NQT6 498 aa12.17□□□□□ -0.46
LIMS1-215ENST00000544547 LCN2P80188 198 aa12.17□□□□□ -0.46
LIMS1-215ENST00000544547 FAM90A2PQ658T7 463 aa12.17□□□□□ -0.46
LIMS1-215ENST00000544547 FAM89BQ8N5H3 189 aa12.17□□□□□ -0.46
LIMS1-215ENST00000544547 OR1A1Q9P1Q5 309 aa12.17□□□□□ -0.46
LIMS1-215ENST00000544547 WNK2Q9Y3S1 2297 aa12.17□□□□□ -0.46
LIMS1-215ENST00000544547 TSPAN7P41732 249 aa12.17□□□□□ -0.46
LIMS1-215ENST00000544547 MIC13Q5XKP0 118 aa12.17□□□□□ -0.46
LIMS1-215ENST00000544547 GFRALQ6UXV0 394 aa12.17□□□□□ -0.46
LIMS1-215ENST00000544547 MMD2Q8IY49 270 aa12.17□□□□□ -0.46
LIMS1-215ENST00000544547 NHLRC2Q8NBF2 726 aa12.17□□□□□ -0.46
LIMS1-215ENST00000544547 OR2Y1Q8NGV0 311 aa12.17□□□□□ -0.46
LIMS1-215ENST00000544547 ABHD14BQ96IU4 210 aa12.17□□□□□ -0.46
LIMS1-215ENST00000544547 IL36RNQ9UBH0 155 aa12.17□□□□□ -0.46
LIMS1-215ENST00000544547 POLR3KQ9Y2Y1 108 aaPredicted RBP12.17□□□□□ -0.46
LIMS1-215ENST00000544547 CACNA1BQ00975 2339 aa12.17□□□□□ -0.46
LIMS1-215ENST00000544547 LINC00614P0C842 121 aa12.17□□□□□ -0.46
LIMS1-215ENST00000544547 CD1BP29016 333 aa12.17□□□□□ -0.46
LIMS1-215ENST00000544547 FOXC1Q12948 553 aa12.17□□□□□ -0.46
LIMS1-215ENST00000544547 SSX8Q7RTT4 187 aa12.17□□□□□ -0.46
LIMS1-215ENST00000544547 WDFY1Q8IWB7 410 aa12.17□□□□□ -0.46
LIMS1-215ENST00000544547 OR2Z1Q8NG97 314 aa12.17□□□□□ -0.46
LIMS1-215ENST00000544547 OR2T6Q8NHC8 308 aa12.17□□□□□ -0.46
LIMS1-215ENST00000544547 SERTM2A0A1B0GWG4 89 aa12.16□□□□□ -0.46
LIMS1-215ENST00000544547 ZNF525Q8N782 197 aa12.16□□□□□ -0.46
LIMS1-215ENST00000544547 TAAR6Q96RI8 345 aa12.16□□□□□ -0.46
LIMS1-215ENST00000544547 RASL10BQ96S79 203 aa12.16□□□□□ -0.46
LIMS1-215ENST00000544547 GAGE10A6NGK3 116 aa12.16□□□□□ -0.46
LIMS1-215ENST00000544547 CA11O75493 328 aa12.16□□□□□ -0.46
LIMS1-215ENST00000544547 ARL14EPLP0DKL9 152 aa12.16□□□□□ -0.46
LIMS1-215ENST00000544547 ZNF137PP52743 207 aa12.16□□□□□ -0.46
LIMS1-215ENST00000544547 IGLV3-21P80748 117 aaPredicted RBP12.16□□□□□ -0.46
LIMS1-215ENST00000544547 NHLH1Q02575 133 aa12.16□□□□□ -0.46
LIMS1-215ENST00000544547 Q5PR19 223 aa12.16□□□□□ -0.46
LIMS1-215ENST00000544547 PSMG3Q9BT73 122 aaPredicted RBP12.16□□□□□ -0.46
LIMS1-215ENST00000544547 TMEM242Q9NWH2 141 aa12.16□□□□□ -0.46
LIMS1-215ENST00000544547 CRYABP02511 175 aaKnown RBP12.16□□□□□ -0.46
LIMS1-215ENST00000544547 CSN1S1P47710 185 aa12.16□□□□□ -0.46
LIMS1-215ENST00000544547 LRRC75BQ2VPJ9 315 aa12.16□□□□□ -0.46
LIMS1-215ENST00000544547 ZNF391Q9UJN7 358 aa12.16□□□□□ -0.46
LIMS1-215ENST00000544547 ARHGAP21Q5T5U3 1957 aa12.16□□□□□ -0.46
LIMS1-215ENST00000544547 GPR179Q6PRD1 2367 aa12.16□□□□□ -0.46
LIMS1-215ENST00000544547 TRGV10A0A0A0MS01 117 aa12.15□□□□□ -0.46
LIMS1-215ENST00000544547 TNFSF13O75888 250 aa12.15□□□□□ -0.46
LIMS1-215ENST00000544547 IGKV3-11P04433 115 aa12.15□□□□□ -0.46
LIMS1-215ENST00000544547 ZNF83P51522 516 aa12.15□□□□□ -0.46
LIMS1-215ENST00000544547 TMEM191AQ9H0A3 160 aa12.15□□□□□ -0.46
LIMS1-215ENST00000544547 ZNF835Q9Y2P0 537 aa12.15□□□□□ -0.46
LIMS1-215ENST00000544547 SYNGR1O43759 233 aa12.15□□□□□ -0.46
LIMS1-215ENST00000544547 CCL4P13236 92 aa12.15□□□□□ -0.46
LIMS1-215ENST00000544547 UCP1P25874 307 aa12.15□□□□□ -0.46
LIMS1-215ENST00000544547 SRD5A2P31213 254 aa12.15□□□□□ -0.46
LIMS1-215ENST00000544547 TFF3Q07654 80 aa12.15□□□□□ -0.46
LIMS1-215ENST00000544547 DCAF10Q5QP82 559 aa12.15□□□□□ -0.46
LIMS1-215ENST00000544547 PQLC2Q6ZP29 291 aa12.15□□□□□ -0.46
LIMS1-215ENST00000544547 DOLPP1Q86YN1 238 aa12.15□□□□□ -0.46
LIMS1-215ENST00000544547 DEFB124Q8NES8 71 aa12.15□□□□□ -0.46
LIMS1-215ENST00000544547 ZNF407Q9C0G0 2248 aa12.15□□□□□ -0.46
LIMS1-215ENST00000544547 BPTFQ12830 3046 aa12.15□□□□□ -0.46
LIMS1-215ENST00000544547 A0A1B0GW64 132 aa12.15□□□□□ -0.46
LIMS1-215ENST00000544547 TMEM30CPA0ZSE6 113 aa12.15□□□□□ -0.46
LIMS1-215ENST00000544547 MEOX1P50221 254 aa12.15□□□□□ -0.46
LIMS1-215ENST00000544547 PSG4Q00888 419 aa12.15□□□□□ -0.46
LIMS1-215ENST00000544547 NRN1Q9NPD7 142 aa12.15□□□□□ -0.46
LIMS1-215ENST00000544547 CLEC1BQ9P126 229 aa12.15□□□□□ -0.46
LIMS1-215ENST00000544547 BRCA2P51587 3418 aa12.15□□□□□ -0.47
LIMS1-215ENST00000544547 SNAI2O43623 268 aa12.15□□□□□ -0.47
LIMS1-215ENST00000544547 NUDT3O95989 172 aa12.15□□□□□ -0.47
LIMS1-215ENST00000544547 IGHMP01871 453 aa12.15□□□□□ -0.47
LIMS1-215ENST00000544547 TNFRSF1AP19438 455 aa12.15□□□□□ -0.47
LIMS1-215ENST00000544547 ID3Q02535 119 aa12.15□□□□□ -0.47
LIMS1-215ENST00000544547 RNPS1Q15287 305 aaKnown RBP12.15□□□□□ -0.47
LIMS1-215ENST00000544547 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.15□□□□□ -0.47
LIMS1-215ENST00000544547 VWA1Q6PCB0 445 aa12.15□□□□□ -0.47
LIMS1-215ENST00000544547 TPRX1Q8N7U7 411 aa12.15□□□□□ -0.47
LIMS1-215ENST00000544547 RNF166Q96A37 237 aaPredicted RBP12.15□□□□□ -0.47
LIMS1-215ENST00000544547 SSBP3Q9BWW4 388 aaPredicted RBP12.15□□□□□ -0.47
LIMS1-215ENST00000544547 ZFP30Q9Y2G7 519 aa12.15□□□□□ -0.47
LIMS1-215ENST00000544547 NPIPB7O75200 414 aa12.14□□□□□ -0.47
LIMS1-215ENST00000544547 LYZL6O75951 148 aa12.14□□□□□ -0.47
LIMS1-215ENST00000544547 WISP1O95388 367 aa12.14□□□□□ -0.47
LIMS1-215ENST00000544547 CXorf1O96002 111 aa12.14□□□□□ -0.47
LIMS1-215ENST00000544547 SSPNQ14714 243 aa12.14□□□□□ -0.47
LIMS1-215ENST00000544547 C1orf210Q8IVY1 113 aa12.14□□□□□ -0.47
LIMS1-215ENST00000544547 BCL2L2Q92843 193 aaPredicted RBP12.14□□□□□ -0.47
LIMS1-215ENST00000544547 CDIPTO14735 213 aa12.14□□□□□ -0.47
LIMS1-215ENST00000544547 OR5AL1P0C617 328 aa12.14□□□□□ -0.47
LIMS1-215ENST00000544547 OR2M3Q8NG83 312 aa12.14□□□□□ -0.47
LIMS1-215ENST00000544547 RAB37Q96AX2 223 aa12.14□□□□□ -0.47
LIMS1-215ENST00000544547 ZNF524Q96C55 264 aa12.14□□□□□ -0.47
LIMS1-215ENST00000544547 LYZL4Q96KX0 146 aa12.14□□□□□ -0.47
LIMS1-215ENST00000544547 HES7Q9BYE0 225 aa12.14□□□□□ -0.47
LIMS1-215ENST00000544547 OR2H1Q9GZK4 316 aa12.14□□□□□ -0.47
LIMS1-215ENST00000544547 SH2D2AQ9NP31 389 aa12.14□□□□□ -0.47
LIMS1-215ENST00000544547 PXMP4Q9Y6I8 212 aa12.14□□□□□ -0.47
LIMS1-215ENST00000544547 LRRK1Q38SD2 2015 aa12.14□□□□□ -0.47
LIMS1-215ENST00000544547 CSRP1P21291 193 aaKnown RBP12.14□□□□□ -0.47
LIMS1-215ENST00000544547 RPL31P62899 125 aaKnown RBP12.14□□□□□ -0.47
LIMS1-215ENST00000544547 FNDC7Q5VTL7 733 aa12.14□□□□□ -0.47
LIMS1-215ENST00000544547 ZNF837Q96EG3 531 aaPredicted RBP12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms