RNA–Protein interactions for RNA: ENST00000542001.5

VARS2-212, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VARS2, Length 4,064 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-212ENST00000542001 HARBI1Q96MB7 349 aa13.62□□□□□ -0.23
VARS2-212ENST00000542001 AUP1Q9Y679 476 aa13.62□□□□□ -0.23
VARS2-212ENST00000542001 SMPD2O60906 423 aa13.62□□□□□ -0.23
VARS2-212ENST00000542001 H1FOOQ8IZA3 346 aaPredicted RBP13.62□□□□□ -0.23
VARS2-212ENST00000542001 NHLRC2Q8NBF2 726 aa13.62□□□□□ -0.23
VARS2-212ENST00000542001 SGMS2Q8NHU3 365 aa13.62□□□□□ -0.23
VARS2-212ENST00000542001 TXN2Q99757 166 aa13.62□□□□□ -0.23
VARS2-212ENST00000542001 COL4A4P53420 1690 aaPredicted RBP13.62□□□□□ -0.23
VARS2-212ENST00000542001 FGF16O43320 207 aa13.62□□□□□ -0.23
VARS2-212ENST00000542001 RBP4P02753 201 aa13.62□□□□□ -0.23
VARS2-212ENST00000542001 C9orf106Q8NAJ2 232 aa13.62□□□□□ -0.23
VARS2-212ENST00000542001 KCNIP2Q9NS61 270 aa13.62□□□□□ -0.23
VARS2-212ENST00000542001 CTXND1A0A1B0GTU2 59 aa13.61□□□□□ -0.23
VARS2-212ENST00000542001 UCP3P55916 312 aa13.61□□□□□ -0.23
VARS2-212ENST00000542001 CYB5R2Q6BCY4 276 aa13.61□□□□□ -0.23
VARS2-212ENST00000542001 SPRR3Q9UBC9 169 aa13.61□□□□□ -0.23
VARS2-212ENST00000542001 TMEM265A0A087WTH1 108 aa13.61□□□□□ -0.23
VARS2-212ENST00000542001 J3QR06 171 aa13.61□□□□□ -0.23
VARS2-212ENST00000542001 CA11O75493 328 aa13.61□□□□□ -0.23
VARS2-212ENST00000542001 HCP5Q6MZN7 132 aa13.61□□□□□ -0.23
VARS2-212ENST00000542001 BCL2L2Q92843 193 aaPredicted RBP13.61□□□□□ -0.23
VARS2-212ENST00000542001 QTRT1Q9BXR0 403 aaKnown RBP13.61□□□□□ -0.23
VARS2-212ENST00000542001 RNF7Q9UBF6 113 aa13.61□□□□□ -0.23
VARS2-212ENST00000542001 DBX2Q6ZNG2 339 aa13.61□□□□□ -0.23
VARS2-212ENST00000542001 TMEM171Q8WVE6 324 aa13.61□□□□□ -0.23
VARS2-212ENST00000542001 IER2Q9BTL4 223 aa13.61□□□□□ -0.23
VARS2-212ENST00000542001 ONECUT1Q9UBC0 465 aa13.61□□□□□ -0.23
VARS2-212ENST00000542001 CARHSP1Q9Y2V2 147 aaKnown RBP13.61□□□□□ -0.23
VARS2-212ENST00000542001 TNCP24821 2201 aa13.61□□□□□ -0.23
VARS2-212ENST00000542001 A0A0G2JRQ6 117 aa13.6□□□□□ -0.23
VARS2-212ENST00000542001 PGPEP1LA6NFU8 196 aa13.6□□□□□ -0.23
VARS2-212ENST00000542001 REG1AP05451 166 aa13.6□□□□□ -0.23
VARS2-212ENST00000542001 GATA2P23769 480 aaPredicted RBP13.6□□□□□ -0.23
VARS2-212ENST00000542001 B3GALT5-AS1P59052 145 aa13.6□□□□□ -0.23
VARS2-212ENST00000542001 GCSAMLQ5JQS6 135 aa13.6□□□□□ -0.23
VARS2-212ENST00000542001 DTX1Q86Y01 620 aa13.6□□□□□ -0.23
VARS2-212ENST00000542001 OR51G1Q8NGK1 321 aa13.6□□□□□ -0.23
VARS2-212ENST00000542001 GATAD1Q8WUU5 269 aa13.6□□□□□ -0.23
VARS2-212ENST00000542001 GINS3Q9BRX5 216 aa13.6□□□□□ -0.23
VARS2-212ENST00000542001 PSPNO60542 156 aa13.6□□□□□ -0.23
VARS2-212ENST00000542001 CYC1P08574 325 aa13.6□□□□□ -0.23
VARS2-212ENST00000542001 HIST3H3Q16695 136 aa13.6□□□□□ -0.23
VARS2-212ENST00000542001 LRRC10Q5BKY1 277 aa13.6□□□□□ -0.23
VARS2-212ENST00000542001 EIF4E3Q8N5X7 224 aaKnown RBP13.6□□□□□ -0.23
VARS2-212ENST00000542001 TNFSF10P50591 281 aa13.6□□□□□ -0.23
VARS2-212ENST00000542001 TAS2R45P59539 299 aa13.6□□□□□ -0.23
VARS2-212ENST00000542001 UBE2L3P68036 154 aaKnown RBP13.6□□□□□ -0.23
VARS2-212ENST00000542001 MS4A10Q96PG2 267 aa13.6□□□□□ -0.23
VARS2-212ENST00000542001 PXMP4Q9Y6I8 212 aa13.6□□□□□ -0.23
VARS2-212ENST00000542001 hADV38S2A0JD32 116 aa13.59□□□□□ -0.23
VARS2-212ENST00000542001 CRYABP02511 175 aaKnown RBP13.59□□□□□ -0.23
VARS2-212ENST00000542001 IER3P46695 156 aa13.59□□□□□ -0.23
VARS2-212ENST00000542001 RHOBP62745 196 aa13.59□□□□□ -0.23
VARS2-212ENST00000542001 TNXAQ16473 311 aa13.59□□□□□ -0.23
VARS2-212ENST00000542001 KIAA1644Q3SXP7 199 aa13.59□□□□□ -0.23
VARS2-212ENST00000542001 RNFT1Q5M7Z0 435 aa13.59□□□□□ -0.23
VARS2-212ENST00000542001 BORCS7Q96B45 105 aa13.59□□□□□ -0.23
VARS2-212ENST00000542001 WDYHV1Q96HA8 205 aa13.59□□□□□ -0.23
VARS2-212ENST00000542001 DBX1A6NMT0 343 aa13.59□□□□□ -0.23
VARS2-212ENST00000542001 SMIM6P0DI80 62 aa13.59□□□□□ -0.23
VARS2-212ENST00000542001 GNG4P50150 75 aa13.59□□□□□ -0.23
VARS2-212ENST00000542001 SUB1P53999 127 aaKnown RBP eCLIP13.59□□□□□ -0.234e-6■■■■□ 25.4
VARS2-212ENST00000542001 PKIBQ9C010 78 aa13.59□□□□□ -0.23
VARS2-212ENST00000542001 ZNF503-AS2A6NEH8 195 aa13.59□□□□□ -0.23
VARS2-212ENST00000542001 NCBP2LA6PVI3 153 aaKnown RBP13.59□□□□□ -0.23
VARS2-212ENST00000542001 TRGC1P0CF51 173 aa13.59□□□□□ -0.23
VARS2-212ENST00000542001 ZNF645Q8N7E2 425 aa13.59□□□□□ -0.23
VARS2-212ENST00000542001 C18orf12Q96KH6 178 aa13.59□□□□□ -0.23
VARS2-212ENST00000542001 GNB4Q9HAV0 340 aa13.59□□□□□ -0.23
VARS2-212ENST00000542001 SEMA5BQ9P283 1151 aa13.59□□□□□ -0.23
VARS2-212ENST00000542001 METRNQ9UJH8 293 aa13.59□□□□□ -0.23
VARS2-212ENST00000542001 SEC14L6B5MCN3 397 aa13.59□□□□□ -0.23
VARS2-212ENST00000542001 RPS2P15880 293 aaKnown RBP13.59□□□□□ -0.23
VARS2-212ENST00000542001 GFRA1P56159 465 aa13.59□□□□□ -0.23
VARS2-212ENST00000542001 FAM216BQ8N7L0 139 aa13.59□□□□□ -0.23
VARS2-212ENST00000542001 GUCD1Q96NT3 240 aa13.59□□□□□ -0.23
VARS2-212ENST00000542001 SRD5A3Q9H8P0 318 aa13.59□□□□□ -0.23
VARS2-212ENST00000542001 PRR33A8MZF0 331 aa13.58□□□□□ -0.24
VARS2-212ENST00000542001 PTBP3O95758 552 aaKnown RBP13.58□□□□□ -0.24
VARS2-212ENST00000542001 SRP19P09132 144 aaKnown RBP13.58□□□□□ -0.24
VARS2-212ENST00000542001 SIGLECL1Q8N7X8 197 aa13.58□□□□□ -0.24
VARS2-212ENST00000542001 OR10G8Q8NGN5 311 aa13.58□□□□□ -0.24
VARS2-212ENST00000542001 PARLQ9H300 379 aa13.58□□□□□ -0.24
VARS2-212ENST00000542001 SH2D2AQ9NP31 389 aa13.58□□□□□ -0.24
VARS2-212ENST00000542001 SZT2Q5T011 3432 aa13.58□□□□□ -0.24
VARS2-212ENST00000542001 IL18BPO95998 194 aa13.58□□□□□ -0.24
VARS2-212ENST00000542001 CT45A6P0DMU7 189 aa13.58□□□□□ -0.24
VARS2-212ENST00000542001 CT45A5P0DMU8 189 aa13.58□□□□□ -0.24
VARS2-212ENST00000542001 CT45A7P0DMV0 189 aa13.58□□□□□ -0.24
VARS2-212ENST00000542001 OTX1P32242 354 aaPredicted RBP13.58□□□□□ -0.24
VARS2-212ENST00000542001 CT45A1Q5HYN5 189 aa13.58□□□□□ -0.24
VARS2-212ENST00000542001 TRAT1Q6PIZ9 186 aa13.58□□□□□ -0.24
VARS2-212ENST00000542001 Q6ZRM9 215 aa13.58□□□□□ -0.24
VARS2-212ENST00000542001 OR1B1Q8NGR6 318 aa13.58□□□□□ -0.24
VARS2-212ENST00000542001 CT45A3Q8NHU0 189 aa13.58□□□□□ -0.24
VARS2-212ENST00000542001 TMEM140Q9NV12 185 aa13.58□□□□□ -0.24
VARS2-212ENST00000542001 MGST3O14880 152 aa13.58□□□□□ -0.24
VARS2-212ENST00000542001 CSRP1P21291 193 aaKnown RBP13.58□□□□□ -0.24
VARS2-212ENST00000542001 PNRC1Q12796 327 aaPredicted RBP13.58□□□□□ -0.24
VARS2-212ENST00000542001 FXYD3Q14802 87 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms