RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 BATFQ16520 125 aa5.55□□□□□ -1.52
USP28-202ENST00000535607 DEFB110Q30KQ9 67 aa5.55□□□□□ -1.52
USP28-202ENST00000535607 NMSQ5H8A3 153 aa5.55□□□□□ -1.52
USP28-202ENST00000535607 SLC25A53Q5H9E4 307 aa5.55□□□□□ -1.52
USP28-202ENST00000535607 CXorf66Q5JRM2 361 aaPredicted RBP5.55□□□□□ -1.52
USP28-202ENST00000535607 TSPO2Q5TGU0 170 aa5.55□□□□□ -1.52
USP28-202ENST00000535607 CST9LP1Q5W188 147 aa5.55□□□□□ -1.52
USP28-202ENST00000535607 FBXW9Q5XUX1 488 aa5.55□□□□□ -1.52
USP28-202ENST00000535607 CYB5R2Q6BCY4 276 aa5.55□□□□□ -1.52
USP28-202ENST00000535607 WDR73Q6P4I2 378 aa5.55□□□□□ -1.52
USP28-202ENST00000535607 GUSBP11Q6P575 273 aa5.55□□□□□ -1.52
USP28-202ENST00000535607 LINC00596Q86U02 117 aa5.55□□□□□ -1.52
USP28-202ENST00000535607 C20orf196Q8IYI0 205 aa5.55□□□□□ -1.52
USP28-202ENST00000535607 SAXO1Q8IYX7 474 aa5.55□□□□□ -1.52
USP28-202ENST00000535607 ZNF738Q8NE65 137 aa5.55□□□□□ -1.52
USP28-202ENST00000535607 OR5T1Q8NG75 326 aa5.55□□□□□ -1.52
USP28-202ENST00000535607 MRGPRDQ8TDS7 321 aa5.55□□□□□ -1.52
USP28-202ENST00000535607 KCNE4Q8WWG9 221 aa5.55□□□□□ -1.52
USP28-202ENST00000535607 PIGTQ969N2 578 aa5.55□□□□□ -1.52
USP28-202ENST00000535607 RPUSD4Q96CM3 377 aaKnown RBP5.55□□□□□ -1.52
USP28-202ENST00000535607 ZNF799Q96GE5 643 aa5.55□□□□□ -1.52
USP28-202ENST00000535607 STRADBQ9C0K7 418 aa5.55□□□□□ -1.52
USP28-202ENST00000535607 PARLQ9H300 379 aa5.55□□□□□ -1.52
USP28-202ENST00000535607 ZNF665Q9H7R5 613 aa5.55□□□□□ -1.52
USP28-202ENST00000535607 ZDHHC11Q9H8X9 412 aa5.55□□□□□ -1.52
USP28-202ENST00000535607 PATZ1Q9HBE1 687 aaKnown RBP5.55□□□□□ -1.52
USP28-202ENST00000535607 DNAJC4Q9NNZ3 241 aa5.55□□□□□ -1.52
USP28-202ENST00000535607 FAM60AQ9NP50 221 aa5.55□□□□□ -1.52
USP28-202ENST00000535607 KCNIP2Q9NS61 270 aa5.55□□□□□ -1.52
USP28-202ENST00000535607 PXMP4Q9Y6I8 212 aa5.55□□□□□ -1.52
USP28-202ENST00000535607 OTOGLQ3ZCN5 2332 aa5.55□□□□□ -1.52
USP28-202ENST00000535607 FREM3P0C091 2139 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 SPTBP11277 2137 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 ADAMTS9Q9P2N4 1935 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 WDR87Q6ZQQ6 2873 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 GON4LQ3T8J9 2241 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 GPR179Q6PRD1 2367 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 IGKV1D-8A0A087WSZ0 117 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 IGKV3D-11A0A0A0MRZ8 115 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 ZNF814B7Z6K7 855 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 K7EP13 123 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 NTN3O00634 580 aaPredicted RBP5.54□□□□□ -1.52
USP28-202ENST00000535607 DEGS1O15121 323 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 RER1O15258 196 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 CBR3O75828 277 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 MT-CO2P00403 227 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 REG1AP05451 166 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 CD59P13987 128 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 CRISP2P16562 243 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 ZNF17P17021 662 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 HNF1AP20823 631 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 HNRNPA3P51991 378 aaKnown RBP5.54□□□□□ -1.52
USP28-202ENST00000535607 RBM11P57052 281 aaKnown RBP5.54□□□□□ -1.52
USP28-202ENST00000535607 UBE2G2P60604 165 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 YPEL3P61236 119 aaPredicted RBP5.54□□□□□ -1.52
USP28-202ENST00000535607 PCBD1P61457 104 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 NSDHLQ15738 373 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 PMCHL1Q16048 86 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 HIST3H3Q16695 136 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 TMEM249Q2WGJ8 235 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 C10orf128Q5T292 105 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 FAM162BQ5T6X4 162 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 FAM78BQ5VT40 261 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 C1QL2Q7Z5L3 287 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 BAGE3Q86Y29 109 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 BAGE2Q86Y30 109 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 SFTPA2Q8IWL1 248 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 PNKDQ8N490 385 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 ZNF525Q8N782 197 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 OR56B2PQ8NGI1 322 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 TAF15Q92804 592 aaKnown RBP eCLIP5.54□□□□□ -1.52
USP28-202ENST00000535607 SDSLQ96GA7 329 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 TXN2Q99757 166 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 TMEM147Q9BVK8 224 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 WDR61Q9GZS3 305 aaKnown RBP5.54□□□□□ -1.52
USP28-202ENST00000535607 PNRC2Q9NPJ4 139 aaKnown RBP5.54□□□□□ -1.52
USP28-202ENST00000535607 SLC35D1Q9NTN3 355 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 HSPB7Q9UBY9 170 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 ST3GAL6Q9Y274 331 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 RNF115Q9Y4L5 304 aa5.54□□□□□ -1.52
USP28-202ENST00000535607 ZNF292O60281 2723 aa5.53□□□□□ -1.52
USP28-202ENST00000535607 TDRD6O60522 2096 aaKnown RBP5.53□□□□□ -1.52
USP28-202ENST00000535607 A0A1W2PQM1 296 aa5.53□□□□□ -1.52
USP28-202ENST00000535607 NKX6-3A6NJ46 265 aa5.53□□□□□ -1.52
USP28-202ENST00000535607 LRRC3CA6NJW4 275 aa5.53□□□□□ -1.52
USP28-202ENST00000535607 HS3ST1O14792 307 aa5.53□□□□□ -1.52
USP28-202ENST00000535607 KLK10O43240 276 aa5.53□□□□□ -1.52
USP28-202ENST00000535607 OR2J2O76002 312 aa5.53□□□□□ -1.52
USP28-202ENST00000535607 IRF2P14316 349 aa5.53□□□□□ -1.52
USP28-202ENST00000535607 F2RP25116 425 aa5.53□□□□□ -1.52
USP28-202ENST00000535607 IL3RAP26951 378 aa5.53□□□□□ -1.52
USP28-202ENST00000535607 GFERP55789 205 aa5.53□□□□□ -1.52
USP28-202ENST00000535607 OR1D5P58170 312 aa5.53□□□□□ -1.52
USP28-202ENST00000535607 PPP1CAP62136 330 aa5.53□□□□□ -1.52
USP28-202ENST00000535607 RPP30P78346 268 aaKnown RBP5.53□□□□□ -1.52
USP28-202ENST00000535607 SLC38A11Q08AI6 406 aa5.53□□□□□ -1.52
USP28-202ENST00000535607 Q0VG73 95 aa5.53□□□□□ -1.52
USP28-202ENST00000535607 MYBPHQ13203 477 aa5.53□□□□□ -1.52
USP28-202ENST00000535607 UBE2V1Q13404 147 aa5.53□□□□□ -1.52
USP28-202ENST00000535607 CARD17Q5XLA6 110 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms