RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 K7EP13 123 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 TOMM40O96008 361 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 OR10J4P0C629 311 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 IGLC2P0DOY2 106 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 IGLC3P0DOY3 106 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 COX6A1P12074 109 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 G6PCP35575 357 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 PLA2G5P39877 138 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 MLF1P58340 268 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 UBE2G2P60604 165 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 TGFBR3Q03167 851 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 AARDQ4LEZ3 155 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 LRP11Q86VZ4 500 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 KLHDC1Q8N7A1 406 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 ZPBPQ9BS86 351 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 LRFN3Q9BTN0 628 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 ARL2-SNX15V9GYD0 113 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 SCO2A0A1W2PP80 73 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 C5orf49A4QMS7 147 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 PGPEP1LA6NFU8 196 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 C15orf62A8K5M9 175 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 FCN1O00602 326 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 RAMP3O60896 148 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 ZNF253O75346 499 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 NDUFB8O95169 186 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 CELA2AP08217 269 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 MYF5P13349 255 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 TMPRSS3P57727 454 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 RBX1P62877 108 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 RPEL1Q2QD12 228 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 ZNF718Q3SXZ3 478 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 MORN2Q502X0 79 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 SPATA45Q537H7 98 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 LEMD1Q68G75 181 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 ABCA7Q8IZY2 2146 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 OR2D3Q8NGH3 330 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 KCNS1Q96KK3 526 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 ZNF488Q96MN9 340 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 TAAR6Q96RI8 345 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 FOXJ2Q9P0K8 574 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 LAMTOR2Q9Y2Q5 125 aa8.11□□□□□ -1.11
SYNE1-230ENST00000495090 TRGV10A0A0A0MS01 117 aa8.1□□□□□ -1.11
SYNE1-230ENST00000495090 TRAV38-1A0A0B4J264 116 aa8.1□□□□□ -1.11
SYNE1-230ENST00000495090 A0A1W2PR80 420 aa8.1□□□□□ -1.11
SYNE1-230ENST00000495090 NKX6-3A6NJ46 265 aa8.1□□□□□ -1.11
SYNE1-230ENST00000495090 FAM90A9PA6NNJ1 464 aa8.1□□□□□ -1.11
SYNE1-230ENST00000495090 SNURFLB1AK76 121 aa8.1□□□□□ -1.11
SYNE1-230ENST00000495090 G3V3Y1 287 aa8.1□□□□□ -1.11
SYNE1-230ENST00000495090 CDIPTO14735 213 aa8.1□□□□□ -1.11
SYNE1-230ENST00000495090 HYPMO75409 117 aa8.1□□□□□ -1.11
SYNE1-230ENST00000495090 S1PR2O95136 353 aa8.1□□□□□ -1.11
SYNE1-230ENST00000495090 OR2H2O95918 312 aa8.1□□□□□ -1.11
SYNE1-230ENST00000495090 ARL14EPLP0DKL9 152 aa8.1□□□□□ -1.11
SYNE1-230ENST00000495090 TMEM11P17152 192 aa8.1□□□□□ -1.11
SYNE1-230ENST00000495090 EN2P19622 333 aaPredicted RBP8.1□□□□□ -1.11
SYNE1-230ENST00000495090 TFPI2P48307 235 aa8.1□□□□□ -1.11
SYNE1-230ENST00000495090 GNG10P50151 68 aa8.1□□□□□ -1.11
SYNE1-230ENST00000495090 RPP30P78346 268 aaKnown RBP8.1□□□□□ -1.11
SYNE1-230ENST00000495090 COTL1Q14019 142 aa8.1□□□□□ -1.11
SYNE1-230ENST00000495090 MMDQ15546 238 aa8.1□□□□□ -1.11
SYNE1-230ENST00000495090 HLA-DRB5Q30154 266 aa8.1□□□□□ -1.11
SYNE1-230ENST00000495090 KRTCAP3Q53RY4 240 aa8.1□□□□□ -1.11
SYNE1-230ENST00000495090 FBXO46Q6PJ61 603 aaPredicted RBP8.1□□□□□ -1.11
SYNE1-230ENST00000495090 H2BFWTQ7Z2G1 175 aa8.1□□□□□ -1.11
SYNE1-230ENST00000495090 YRDCQ86U90 279 aaKnown RBP8.1□□□□□ -1.11
SYNE1-230ENST00000495090 MYPOPQ86VE0 399 aaPredicted RBP8.1□□□□□ -1.11
SYNE1-230ENST00000495090 C22orf15Q8WYQ4 148 aa8.1□□□□□ -1.11
SYNE1-230ENST00000495090 ZDHHC16Q969W1 377 aa8.1□□□□□ -1.11
SYNE1-230ENST00000495090 STARD4Q96DR4 205 aa8.1□□□□□ -1.11
SYNE1-230ENST00000495090 POM121L2Q96KW2 1035 aa8.1□□□□□ -1.11
SYNE1-230ENST00000495090 MRPS16Q9Y3D3 137 aaKnown RBP8.1□□□□□ -1.11
SYNE1-230ENST00000495090 REV3LO60673 3130 aa8.1□□□□□ -1.11
SYNE1-230ENST00000495090 IGHV5-10-1A0A0J9YXX1 117 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 K7EN84 100 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 OR5G3P0C626 314 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 DEFA4P12838 97 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 AREGP15514 252 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 CCNOP22674 350 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 ARR3P36575 388 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 CDKN1BP46527 198 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 HNRNPA3P51991 378 aaKnown RBP8.09□□□□□ -1.11
SYNE1-230ENST00000495090 ERVK11-1P61568 191 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 RPL30P62888 115 aaKnown RBP8.09□□□□□ -1.11
SYNE1-230ENST00000495090 ARF1P84077 181 aaKnown RBP8.09□□□□□ -1.11
SYNE1-230ENST00000495090 ZNF146Q15072 292 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 C19orf35Q6ZS72 473 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 TIPARPQ7Z3E1 657 aaKnown RBP8.09□□□□□ -1.11
SYNE1-230ENST00000495090 MMD2Q8IY49 270 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 STPG4Q8N801 248 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 OR5B3Q8NH48 314 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 GNB4Q9HAV0 340 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 NRN1Q9NPD7 142 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 POLDIP2Q9Y2S7 368 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 TBL2Q9Y4P3 447 aaKnown RBP8.09□□□□□ -1.11
SYNE1-230ENST00000495090 KIAA0100Q14667 2235 aaKnown RBP8.09□□□□□ -1.11
SYNE1-230ENST00000495090 MRPL33O75394 65 aaKnown RBP8.09□□□□□ -1.11
SYNE1-230ENST00000495090 NEURL1O76050 574 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 MT-CO2P00403 227 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 P04436 131 aa8.09□□□□□ -1.11
SYNE1-230ENST00000495090 IER3P46695 156 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms