RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 EDDM3AQ14507 147 aa13.82□□□□□ -0.2
CCDC88B-210ENST00000494566 CST9LP1Q5W188 147 aa13.82□□□□□ -0.2
CCDC88B-210ENST00000494566 Q8IYB0 196 aa13.82□□□□□ -0.2
CCDC88B-210ENST00000494566 OR8G5Q8NG78 346 aa13.82□□□□□ -0.2
CCDC88B-210ENST00000494566 TAF15Q92804 592 aaKnown RBP eCLIP13.82□□□□□ -0.2
CCDC88B-210ENST00000494566 IL22RA2Q969J5 263 aa13.82□□□□□ -0.2
CCDC88B-210ENST00000494566 COQ2Q96H96 371 aa13.82□□□□□ -0.2
CCDC88B-210ENST00000494566 MBNL3Q9NUK0 354 aaKnown RBP13.82□□□□□ -0.2
CCDC88B-210ENST00000494566 A0A087WWC5 75 aa13.81□□□□□ -0.2
CCDC88B-210ENST00000494566 TRAV38-1A0A0B4J264 116 aa13.81□□□□□ -0.2
CCDC88B-210ENST00000494566 IGKV3-15P01624 115 aa13.81□□□□□ -0.2
CCDC88B-210ENST00000494566 FGF7P21781 194 aa13.81□□□□□ -0.2
CCDC88B-210ENST00000494566 DDTP30046 118 aa13.81□□□□□ -0.2
CCDC88B-210ENST00000494566 CYB5R2Q6BCY4 276 aa13.81□□□□□ -0.2
CCDC88B-210ENST00000494566 VKORC1L1Q8N0U8 176 aa13.81□□□□□ -0.2
CCDC88B-210ENST00000494566 RAB40CQ96S21 281 aa13.81□□□□□ -0.2
CCDC88B-210ENST00000494566 WDR61Q9GZS3 305 aaKnown RBP13.81□□□□□ -0.2
CCDC88B-210ENST00000494566 DUSP13Q9UII6 198 aa13.81□□□□□ -0.2
CCDC88B-210ENST00000494566 ZNF318Q5VUA4 2279 aa13.81□□□□□ -0.2
CCDC88B-210ENST00000494566 S1PR2O95136 353 aa13.81□□□□□ -0.2
CCDC88B-210ENST00000494566 HBZP02008 142 aa13.81□□□□□ -0.2
CCDC88B-210ENST00000494566 GALR1P47211 349 aa13.81□□□□□ -0.2
CCDC88B-210ENST00000494566 GNB2P62879 340 aa13.81□□□□□ -0.2
CCDC88B-210ENST00000494566 GUSBP1Q15486 140 aa13.81□□□□□ -0.2
CCDC88B-210ENST00000494566 SPRNQ5BIV9 151 aa13.81□□□□□ -0.2
CCDC88B-210ENST00000494566 FFAR4Q5NUL3 377 aa13.81□□□□□ -0.2
CCDC88B-210ENST00000494566 WDR82Q6UXN9 313 aa13.81□□□□□ -0.2
CCDC88B-210ENST00000494566 PARLQ9H300 379 aa13.81□□□□□ -0.2
CCDC88B-210ENST00000494566 H7BYZ3 331 aa13.8□□□□□ -0.2
CCDC88B-210ENST00000494566 MSMPQ1L6U9 139 aa13.8□□□□□ -0.2
CCDC88B-210ENST00000494566 OR10A7Q8NGE5 316 aa13.8□□□□□ -0.2
CCDC88B-210ENST00000494566 MISP3Q96FF7 219 aa13.8□□□□□ -0.2
CCDC88B-210ENST00000494566 PATZ1Q9HBE1 687 aaKnown RBP13.8□□□□□ -0.2
CCDC88B-210ENST00000494566 CISD1Q9NZ45 108 aaKnown RBP13.8□□□□□ -0.2
CCDC88B-210ENST00000494566 VAX2Q9UIW0 290 aa13.8□□□□□ -0.2
CCDC88B-210ENST00000494566 ACACAQ13085 2346 aa13.8□□□□□ -0.2
CCDC88B-210ENST00000494566 RELNP78509 3460 aa13.8□□□□□ -0.2
CCDC88B-210ENST00000494566 AMBPP02760 352 aa13.8□□□□□ -0.2
CCDC88B-210ENST00000494566 MAS1LP35410 378 aa13.8□□□□□ -0.2
CCDC88B-210ENST00000494566 EDDM3BP56851 147 aa13.8□□□□□ -0.2
CCDC88B-210ENST00000494566 BSXQ3C1V8 233 aa13.8□□□□□ -0.2
CCDC88B-210ENST00000494566 VHLLQ6RSH7 139 aa13.8□□□□□ -0.2
CCDC88B-210ENST00000494566 MOB1BQ7L9L4 216 aa13.8□□□□□ -0.2
CCDC88B-210ENST00000494566 OR13A1Q8NGR1 328 aa13.8□□□□□ -0.2
CCDC88B-210ENST00000494566 OR13D1Q8NGV5 346 aa13.8□□□□□ -0.2
CCDC88B-210ENST00000494566 DKK4Q9UBT3 224 aa13.8□□□□□ -0.2
CCDC88B-210ENST00000494566 WIPI2Q9Y4P8 454 aa13.8□□□□□ -0.2
CCDC88B-210ENST00000494566 TRAV17A0A0B4J275 112 aa13.8□□□□□ -0.2
CCDC88B-210ENST00000494566 IGHV1-18A0A0C4DH31 117 aa13.8□□□□□ -0.2
CCDC88B-210ENST00000494566 C17orf98A8MV24 154 aa13.8□□□□□ -0.2
CCDC88B-210ENST00000494566 HBG1P69891 147 aa13.8□□□□□ -0.2
CCDC88B-210ENST00000494566 HBG2P69892 147 aa13.8□□□□□ -0.2
CCDC88B-210ENST00000494566 PMS2P11Q13670 270 aa13.8□□□□□ -0.2
CCDC88B-210ENST00000494566 ACSF3Q4G176 576 aaPredicted RBP13.8□□□□□ -0.2
CCDC88B-210ENST00000494566 ACP7Q6ZNF0 438 aa13.8□□□□□ -0.2
CCDC88B-210ENST00000494566 OR10G4Q8NGN3 311 aa13.8□□□□□ -0.2
CCDC88B-210ENST00000494566 OR10G9Q8NGN4 311 aa13.8□□□□□ -0.2
CCDC88B-210ENST00000494566 OR10G7Q8NGN6 311 aa13.8□□□□□ -0.2
CCDC88B-210ENST00000494566 GALMQ96C23 342 aa13.8□□□□□ -0.2
CCDC88B-210ENST00000494566 SIRT7Q9NRC8 400 aa13.8□□□□□ -0.2
CCDC88B-210ENST00000494566 LIN7CQ9NUP9 197 aaKnown RBP13.8□□□□□ -0.2
CCDC88B-210ENST00000494566 KCNIP1Q9NZI2 227 aa13.8□□□□□ -0.2
CCDC88B-210ENST00000494566 PKDREJQ9NTG1 2253 aa13.79□□□□□ -0.2
CCDC88B-210ENST00000494566 TMEM30CPA0ZSE6 113 aa13.79□□□□□ -0.2
CCDC88B-210ENST00000494566 RPL23P62829 140 aaKnown RBP13.79□□□□□ -0.2
CCDC88B-210ENST00000494566 MEF2BQ02080 365 aaPredicted RBP13.79□□□□□ -0.2
CCDC88B-210ENST00000494566 TMEM241Q24JQ0 296 aa13.79□□□□□ -0.2
CCDC88B-210ENST00000494566 LRRC75BQ2VPJ9 315 aa13.79□□□□□ -0.2
CCDC88B-210ENST00000494566 TMEM41BQ5BJD5 291 aa13.79□□□□□ -0.2
CCDC88B-210ENST00000494566 OR2Z1Q8NG97 314 aa13.79□□□□□ -0.2
CCDC88B-210ENST00000494566 HCFC1P51610 2035 aa13.79□□□□□ -0.2
CCDC88B-210ENST00000494566 IGHV3OR15-7A0A075B7D8 119 aa13.79□□□□□ -0.2
CCDC88B-210ENST00000494566 NPIPB11E5RHQ5 1161 aa13.79□□□□□ -0.2
CCDC88B-210ENST00000494566 ST8SIA5O15466 376 aa13.79□□□□□ -0.2
CCDC88B-210ENST00000494566 TNFSF13O75888 250 aa13.79□□□□□ -0.2
CCDC88B-210ENST00000494566 ZNF83P51522 516 aa13.79□□□□□ -0.2
CCDC88B-210ENST00000494566 TCF23Q7RTU1 214 aa13.79□□□□□ -0.2
CCDC88B-210ENST00000494566 IGHV2OR16-5A0A0B4J2B6 119 aa13.78□□□□□ -0.2
CCDC88B-210ENST00000494566 CEACAM1P13688 526 aa13.78□□□□□ -0.2
CCDC88B-210ENST00000494566 COX5AP20674 150 aa13.78□□□□□ -0.2
CCDC88B-210ENST00000494566 SEM1Q6ZVN7 128 aa13.78□□□□□ -0.2
CCDC88B-210ENST00000494566 HES4Q9HCC6 221 aa13.78□□□□□ -0.2
CCDC88B-210ENST00000494566 PPP5D1E7EU14 171 aa13.78□□□□□ -0.2
CCDC88B-210ENST00000494566 AQP7O14520 342 aa13.78□□□□□ -0.2
CCDC88B-210ENST00000494566 FAM78BQ5VT40 261 aa13.78□□□□□ -0.2
CCDC88B-210ENST00000494566 SP5Q6BEB4 398 aaPredicted RBP13.78□□□□□ -0.2
CCDC88B-210ENST00000494566 STARD4Q96DR4 205 aa13.78□□□□□ -0.2
CCDC88B-210ENST00000494566 CXXC4Q9H2H0 198 aa13.78□□□□□ -0.2
CCDC88B-210ENST00000494566 SMDT1Q9H4I9 107 aa13.78□□□□□ -0.2
CCDC88B-210ENST00000494566 ODAMA1E959 279 aa13.77□□□□□ -0.2
CCDC88B-210ENST00000494566 PRR33A8MZF0 331 aa13.77□□□□□ -0.2
CCDC88B-210ENST00000494566 TSTD3H0UI37 97 aa13.77□□□□□ -0.2
CCDC88B-210ENST00000494566 OR4A8P0C604 315 aa13.77□□□□□ -0.2
CCDC88B-210ENST00000494566 GCH1P30793 250 aa13.77□□□□□ -0.2
CCDC88B-210ENST00000494566 ATP5G3P48201 142 aa13.77□□□□□ -0.2
CCDC88B-210ENST00000494566 THBS3P49746 956 aa13.77□□□□□ -0.2
CCDC88B-210ENST00000494566 BRWD1-AS2P59051 145 aa13.77□□□□□ -0.2
CCDC88B-210ENST00000494566 ASPHD1Q5U4P2 390 aa13.77□□□□□ -0.2
CCDC88B-210ENST00000494566 MRPL41Q8IXM3 137 aaKnown RBP13.77□□□□□ -0.2
CCDC88B-210ENST00000494566 LRRC29Q8WV35 223 aa13.77□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms