RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 DNAJC4Q9NNZ3 241 aa11.25□□□□□ -0.61
COL6A3-212ENST00000491769 CDC42EP3Q9UKI2 254 aa11.25□□□□□ -0.61
COL6A3-212ENST00000491769 NDUFB4O95168 129 aa11.24□□□□□ -0.61
COL6A3-212ENST00000491769 RUNX1Q01196 453 aa11.24□□□□□ -0.61
COL6A3-212ENST00000491769 OR51M1Q9H341 326 aa11.24□□□□□ -0.61
COL6A3-212ENST00000491769 B4DEV8 164 aa11.24□□□□□ -0.61
COL6A3-212ENST00000491769 XAF1Q6GPH4 301 aa11.24□□□□□ -0.61
COL6A3-212ENST00000491769 H3BQ15 152 aa11.24□□□□□ -0.61
COL6A3-212ENST00000491769 HOXA6P31267 233 aa11.24□□□□□ -0.61
COL6A3-212ENST00000491769 ZNRF1Q8ND25 227 aa11.24□□□□□ -0.61
COL6A3-212ENST00000491769 RAB24Q969Q5 203 aa11.24□□□□□ -0.61
COL6A3-212ENST00000491769 SIGLEC12Q96PQ1 595 aa11.24□□□□□ -0.61
COL6A3-212ENST00000491769 GP6Q9HCN6 339 aa11.24□□□□□ -0.61
COL6A3-212ENST00000491769 JPT1Q9UK76 154 aa11.24□□□□□ -0.61
COL6A3-212ENST00000491769 CFDP00746 253 aaPredicted RBP11.24□□□□□ -0.61
COL6A3-212ENST00000491769 DMRTA2Q96SC8 542 aa11.24□□□□□ -0.61
COL6A3-212ENST00000491769 GDF15Q99988 308 aa11.24□□□□□ -0.61
COL6A3-212ENST00000491769 SCN7AQ01118 1682 aa11.24□□□□□ -0.61
COL6A3-212ENST00000491769 CTDSPLO15194 276 aa11.24□□□□□ -0.61
COL6A3-212ENST00000491769 GPR61Q9BZJ8 451 aa11.24□□□□□ -0.61
COL6A3-212ENST00000491769 FBXL15Q9H469 300 aa11.24□□□□□ -0.61
COL6A3-212ENST00000491769 PAM16Q9Y3D7 125 aa11.24□□□□□ -0.61
COL6A3-212ENST00000491769 SOX21Q9Y651 276 aaPredicted RBP11.24□□□□□ -0.61
COL6A3-212ENST00000491769 RGPD4Q7Z3J3 1758 aa11.24□□□□□ -0.61
COL6A3-212ENST00000491769 C7orf71A4D174 169 aa11.24□□□□□ -0.61
COL6A3-212ENST00000491769 PQLC2Q6ZP29 291 aa11.24□□□□□ -0.61
COL6A3-212ENST00000491769 SCARF2Q96GP6 870 aaPredicted RBP11.24□□□□□ -0.61
COL6A3-212ENST00000491769 PKIBQ9C010 78 aa11.24□□□□□ -0.61
COL6A3-212ENST00000491769 SLIRPQ9GZT3 109 aaKnown RBP11.24□□□□□ -0.61
COL6A3-212ENST00000491769 ZNF703Q9H7S9 590 aaPredicted RBP11.24□□□□□ -0.61
COL6A3-212ENST00000491769 IGHV3OR16-8A0A075B7F1 116 aa11.23□□□□□ -0.61
COL6A3-212ENST00000491769 NGFRP08138 427 aa11.23□□□□□ -0.61
COL6A3-212ENST00000491769 TIMM23BQ5SRD1 257 aa11.23□□□□□ -0.61
COL6A3-212ENST00000491769 ST6GAL2Q96JF0 529 aa11.23□□□□□ -0.61
COL6A3-212ENST00000491769 F5P12259 2224 aa11.23□□□□□ -0.61
COL6A3-212ENST00000491769 KNTC1P50748 2209 aa11.23□□□□□ -0.61
COL6A3-212ENST00000491769 M0R381 172 aa11.23□□□□□ -0.61
COL6A3-212ENST00000491769 GPR183P32249 361 aa11.23□□□□□ -0.61
COL6A3-212ENST00000491769 RNASE4P34096 147 aaKnown RBP11.23□□□□□ -0.61
COL6A3-212ENST00000491769 HSPE1P61604 102 aaKnown RBP11.23□□□□□ -0.61
COL6A3-212ENST00000491769 SLC25A47Q6Q0C1 308 aa11.23□□□□□ -0.61
COL6A3-212ENST00000491769 CRPP02741 224 aa11.23□□□□□ -0.61
COL6A3-212ENST00000491769 GOLT1AQ6ZVE7 132 aa11.23□□□□□ -0.61
COL6A3-212ENST00000491769 GPHA2Q96T91 129 aa11.23□□□□□ -0.61
COL6A3-212ENST00000491769 MRPL13Q9BYD1 178 aaKnown RBP11.23□□□□□ -0.61
COL6A3-212ENST00000491769 ASAH2BP0C7U1 165 aa11.23□□□□□ -0.61
COL6A3-212ENST00000491769 C10orf128Q5T292 105 aa11.23□□□□□ -0.61
COL6A3-212ENST00000491769 PRSS22Q9GZN4 317 aa11.23□□□□□ -0.61
COL6A3-212ENST00000491769 DPM3Q9P2X0 92 aa11.23□□□□□ -0.61
COL6A3-212ENST00000491769 SPAG17Q6Q759 2223 aa11.23□□□□□ -0.61
COL6A3-212ENST00000491769 RAG2P55895 527 aa11.23□□□□□ -0.61
COL6A3-212ENST00000491769 CFHR5Q9BXR6 569 aa11.23□□□□□ -0.61
COL6A3-212ENST00000491769 FAM74A7A6NL05 159 aa11.22□□□□□ -0.61
COL6A3-212ENST00000491769 H7C1H1 209 aa11.22□□□□□ -0.61
COL6A3-212ENST00000491769 ZNF415Q09FC8 603 aa11.22□□□□□ -0.61
COL6A3-212ENST00000491769 Q6ZT83 130 aa11.22□□□□□ -0.61
COL6A3-212ENST00000491769 OR51G1Q8NGK1 321 aa11.22□□□□□ -0.61
COL6A3-212ENST00000491769 HMSDA8MTL9 139 aa11.22□□□□□ -0.61
COL6A3-212ENST00000491769 DIRC3C9JPN6 131 aa11.22□□□□□ -0.61
COL6A3-212ENST00000491769 LMX1BO60663 402 aa11.22□□□□□ -0.61
COL6A3-212ENST00000491769 PGLYRP1O75594 196 aaPredicted RBP11.22□□□□□ -0.61
COL6A3-212ENST00000491769 FAM201AQ5SY85 155 aa11.22□□□□□ -0.61
COL6A3-212ENST00000491769 PET117Q6UWS5 81 aa11.22□□□□□ -0.61
COL6A3-212ENST00000491769 FGFRL1Q8N441 504 aa11.22□□□□□ -0.61
COL6A3-212ENST00000491769 SEMA5BQ9P283 1151 aa11.22□□□□□ -0.61
COL6A3-212ENST00000491769 A0A1W2PP11 408 aa11.22□□□□□ -0.61
COL6A3-212ENST00000491769 TIAF1O95411 115 aa11.22□□□□□ -0.61
COL6A3-212ENST00000491769 RCC1P18754 421 aaPredicted RBP11.22□□□□□ -0.61
COL6A3-212ENST00000491769 FAM209BQ5JX69 171 aa11.22□□□□□ -0.61
COL6A3-212ENST00000491769 FAM181AQ8N9Y4 354 aa11.22□□□□□ -0.61
COL6A3-212ENST00000491769 NPIPB3Q92617 1050 aa11.22□□□□□ -0.61
COL6A3-212ENST00000491769 C2orf88Q9BSF0 95 aa11.22□□□□□ -0.61
COL6A3-212ENST00000491769 TRBV20OR9-2A0A075B6H5 130 aa11.22□□□□□ -0.61
COL6A3-212ENST00000491769 ELOA3CA0A087WX78 387 aaPredicted RBP11.22□□□□□ -0.61
COL6A3-212ENST00000491769 EFEMP2O95967 443 aa11.22□□□□□ -0.61
COL6A3-212ENST00000491769 PRB3Q04118 309 aaPredicted RBP11.22□□□□□ -0.61
COL6A3-212ENST00000491769 CELA3AP09093 270 aa11.22□□□□□ -0.61
COL6A3-212ENST00000491769 HKR1P10072 659 aa11.22□□□□□ -0.61
COL6A3-212ENST00000491769 TJP1Q07157 1748 aa11.22□□□□□ -0.61
COL6A3-212ENST00000491769 LDLRAD2Q5SZI1 272 aa11.22□□□□□ -0.61
COL6A3-212ENST00000491769 CYB5R1Q9UHQ9 305 aa11.22□□□□□ -0.61
COL6A3-212ENST00000491769 FOXA2Q9Y261 457 aaPredicted RBP11.22□□□□□ -0.61
COL6A3-212ENST00000491769 ASIPP42127 132 aa11.21□□□□□ -0.61
COL6A3-212ENST00000491769 C1QTNF12Q5T7M4 302 aa11.21□□□□□ -0.61
COL6A3-212ENST00000491769 ZNF383Q8NA42 475 aa11.21□□□□□ -0.61
COL6A3-212ENST00000491769 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.21□□□□□ -0.61
COL6A3-212ENST00000491769 MARCH11A6NNE9 402 aa11.21□□□□□ -0.61
COL6A3-212ENST00000491769 IGF2P01344 180 aa11.21□□□□□ -0.61
COL6A3-212ENST00000491769 ZG16O60844 167 aa11.21□□□□□ -0.62
COL6A3-212ENST00000491769 ARPC1AQ92747 370 aa11.21□□□□□ -0.62
COL6A3-212ENST00000491769 TRAV20A0A0B4J274 112 aa11.21□□□□□ -0.62
COL6A3-212ENST00000491769 HSPB1P04792 205 aaKnown RBP11.21□□□□□ -0.62
COL6A3-212ENST00000491769 LINC00470Q9BZP3 86 aa11.21□□□□□ -0.62
COL6A3-212ENST00000491769 F11RQ9Y624 299 aaKnown RBP11.21□□□□□ -0.62
COL6A3-212ENST00000491769 MDKP21741 143 aaPredicted RBP11.2□□□□□ -0.62
COL6A3-212ENST00000491769 PTGDSP41222 190 aa11.2□□□□□ -0.62
COL6A3-212ENST00000491769 PAPPA-AS1Q5QFB9 102 aa11.2□□□□□ -0.62
COL6A3-212ENST00000491769 OR13A1Q8NGR1 328 aa11.2□□□□□ -0.62
COL6A3-212ENST00000491769 PILRAQ9UKJ1 303 aa11.2□□□□□ -0.62
COL6A3-212ENST00000491769 RPL39P5Q59GN2 51 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms