RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 DOCK5Q9H7D0 1870 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 KIAA2026Q5HYC2 2103 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 ABCC11Q96J66 1382 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP0.88□□□□□ -2.27
CPSF3-205ENST00000489629 TRGV4A0A0C4DH28 118 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 A0A0J9YX75 114 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 C5orf49A4QMS7 147 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 OR6C6A6NF89 314 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 OR5K4A6NMS3 321 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 OR11H12B2RN74 326 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 LRRN3E7EW58 273 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 KCNK1O00180 336 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 SLC16A4O15374 487 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 CRTAPO75718 401 aaPredicted RBP0.88□□□□□ -2.27
CPSF3-205ENST00000489629 LYPLA2O95372 231 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 IFNA5P01569 189 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 HLA-DQB2P05538 268 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 OCM2P0CE71 109 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 CPMP14384 443 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 NQO1P15559 274 aaKnown RBP0.88□□□□□ -2.27
CPSF3-205ENST00000489629 NPPCP23582 126 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 LPAR6P43657 344 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 NKX2-5P52952 324 aaPredicted RBP0.88□□□□□ -2.27
CPSF3-205ENST00000489629 RWDD2BP57060 319 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 PRDX4Q13162 271 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 SS18Q15532 418 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 PTRHD1Q6GMV3 140 aaKnown RBP0.88□□□□□ -2.27
CPSF3-205ENST00000489629 TNFAIP8L2Q6P589 184 aaPredicted RBP0.88□□□□□ -2.27
CPSF3-205ENST00000489629 CD200R1LQ6Q8B3 271 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 ALKAL1Q6UXT8 129 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 RASSF6Q6ZTQ3 369 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 ZNF767PQ75MW2 155 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 GID4Q8IVV7 300 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 C10orf67Q8IYJ2 551 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 UMODL1-AS1Q8N2C9 162 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 CNEP1R1Q8N9A8 125 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 ZNF565Q8N9K5 539 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 OR51D1Q8NGF3 324 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 OR4C16Q8NGL9 310 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 OR11H2Q8NH07 326 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 OR10A6Q8NH74 314 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 SGMS2Q8NHU3 365 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 FNDC9Q8TBE3 224 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 C16orf78Q8WTQ4 265 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 RAB2BQ8WUD1 216 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 RNF133Q8WVZ7 376 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 MGLLQ99685 303 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 TTTY13Q9BZ97 58 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 NKX6-2Q9C056 277 aaPredicted RBP0.88□□□□□ -2.27
CPSF3-205ENST00000489629 CXorf21Q9HAI6 301 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 HRASLSQ9HDD0 168 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 FGFR1OP2Q9NVK5 253 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 BABAM2Q9NXR7 383 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 USE1Q9NZ43 259 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 PSORS1C2Q9UIG4 136 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 SNX12Q9UMY4 172 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 POLR1DQ9Y2S0 133 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 SLIT2O94813 1529 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 MYO3BQ8WXR4 1341 aa0.88□□□□□ -2.27
CPSF3-205ENST00000489629 MDC1Q14676 2089 aaKnown RBP0.87□□□□□ -2.27
CPSF3-205ENST00000489629 ABCC12Q96J65 1359 aa0.87□□□□□ -2.27
CPSF3-205ENST00000489629 IGHV3-15A0A0B4J1V0 119 aa0.87□□□□□ -2.27
CPSF3-205ENST00000489629 DHRS12A0PJE2 317 aa0.87□□□□□ -2.27
CPSF3-205ENST00000489629 C11orf86A6NJI1 115 aa0.87□□□□□ -2.27
CPSF3-205ENST00000489629 C9JCJ5 164 aa0.87□□□□□ -2.27
CPSF3-205ENST00000489629 INMT-MINDY4F8WBC2 141 aa0.87□□□□□ -2.27
CPSF3-205ENST00000489629 SLC17A3O00476 420 aa0.87□□□□□ -2.27
CPSF3-205ENST00000489629 COX7A2LO14548 114 aa0.87□□□□□ -2.27
CPSF3-205ENST00000489629 MT-CO2P00403 227 aa0.87□□□□□ -2.27
CPSF3-205ENST00000489629 ISG15P05161 165 aa0.87□□□□□ -2.27
CPSF3-205ENST00000489629 TAS2R45P59539 299 aa0.87□□□□□ -2.27
CPSF3-205ENST00000489629 NAA20P61599 178 aa0.87□□□□□ -2.27
CPSF3-205ENST00000489629 DEFB103AP81534 67 aa0.87□□□□□ -2.27
CPSF3-205ENST00000489629 TNFAIP6P98066 277 aaPredicted RBP0.87□□□□□ -2.27
CPSF3-205ENST00000489629 TMEM176BQ3YBM2 270 aaPredicted RBP0.87□□□□□ -2.27
CPSF3-205ENST00000489629 PCOTHQ58A44 107 aa0.87□□□□□ -2.27
CPSF3-205ENST00000489629 N4BP2L1Q5TBK1 243 aaPredicted RBP0.87□□□□□ -2.27
CPSF3-205ENST00000489629 C8orf74Q6P047 294 aa0.87□□□□□ -2.27
CPSF3-205ENST00000489629 AMTNQ6UX39 209 aa0.87□□□□□ -2.27
CPSF3-205ENST00000489629 ZNF550Q7Z398 422 aa0.87□□□□□ -2.27
CPSF3-205ENST00000489629 TMEM86BQ8N661 226 aa0.87□□□□□ -2.27
CPSF3-205ENST00000489629 UBL4BQ8N7F7 174 aa0.87□□□□□ -2.27
CPSF3-205ENST00000489629 OR2T27Q8NH04 317 aa0.87□□□□□ -2.27
CPSF3-205ENST00000489629 KLK6Q92876 244 aa0.87□□□□□ -2.27
CPSF3-205ENST00000489629 FGF13Q92913 245 aa0.87□□□□□ -2.27
CPSF3-205ENST00000489629 GNPNAT1Q96EK6 184 aaPredicted RBP0.87□□□□□ -2.27
CPSF3-205ENST00000489629 CPNE2Q96FN4 548 aaPredicted RBP0.87□□□□□ -2.27
CPSF3-205ENST00000489629 ANKRD36BP1Q96IX9 119 aa0.87□□□□□ -2.27
CPSF3-205ENST00000489629 NMNAT3Q96T66 252 aa0.87□□□□□ -2.27
CPSF3-205ENST00000489629 ZNF471Q9BX82 626 aaPredicted RBP0.87□□□□□ -2.27
CPSF3-205ENST00000489629 SPZ1Q9BXG8 430 aa0.87□□□□□ -2.27
CPSF3-205ENST00000489629 HES4Q9HCC6 221 aa0.87□□□□□ -2.27
CPSF3-205ENST00000489629 TMEM106BQ9NUM4 274 aa0.87□□□□□ -2.27
CPSF3-205ENST00000489629 C3orf18Q9UK00 162 aa0.87□□□□□ -2.27
CPSF3-205ENST00000489629 ANAPC10Q9UM13 185 aa0.87□□□□□ -2.27
CPSF3-205ENST00000489629 GUCA1BQ9UMX6 200 aa0.87□□□□□ -2.27
CPSF3-205ENST00000489629 ZFYVE9O95405 1425 aa0.87□□□□□ -2.27
CPSF3-205ENST00000489629 CR1P17927 2039 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 MAP3K5Q99683 1374 aa0.86□□□□□ -2.27
CPSF3-205ENST00000489629 CEP350Q5VT06 3117 aa0.86□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms