RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 FAM201AQ5SY85 155 aa0.49□□□□□ -2.33
VPS50-216ENST00000484954 C1orf194Q5T5A4 169 aa0.49□□□□□ -2.33
VPS50-216ENST00000484954 OR10K2Q6IF99 312 aa0.49□□□□□ -2.33
VPS50-216ENST00000484954 CCDC121Q6ZUS5 278 aa0.49□□□□□ -2.33
VPS50-216ENST00000484954 FAM19A5Q7Z5A7 132 aaPredicted RBP0.49□□□□□ -2.33
VPS50-216ENST00000484954 SPATA24Q86W54 205 aa0.49□□□□□ -2.33
VPS50-216ENST00000484954 COA5Q86WW8 74 aa0.49□□□□□ -2.33
VPS50-216ENST00000484954 C9orf163Q8N9P6 203 aa0.49□□□□□ -2.33
VPS50-216ENST00000484954 SGMS2Q8NHU3 365 aa0.49□□□□□ -2.33
VPS50-216ENST00000484954 C10orf105Q8TEF2 133 aa0.49□□□□□ -2.33
VPS50-216ENST00000484954 CYGBQ8WWM9 190 aa0.49□□□□□ -2.33
VPS50-216ENST00000484954 ASB13Q8WXK3 278 aa0.49□□□□□ -2.33
VPS50-216ENST00000484954 MRPS24Q96EL2 167 aaKnown RBP0.49□□□□□ -2.33
VPS50-216ENST00000484954 SPZ1Q9BXG8 430 aa0.49□□□□□ -2.33
VPS50-216ENST00000484954 TTTY13Q9BZ97 58 aa0.49□□□□□ -2.33
VPS50-216ENST00000484954 EMC3Q9P0I2 261 aa0.49□□□□□ -2.33
VPS50-216ENST00000484954 RPL26L1Q9UNX3 145 aaKnown RBP0.49□□□□□ -2.33
VPS50-216ENST00000484954 POLR3HQ9Y535 204 aaPredicted RBP0.49□□□□□ -2.33
VPS50-216ENST00000484954 PCYT1BQ9Y5K3 369 aaPredicted RBP0.49□□□□□ -2.33
VPS50-216ENST00000484954 ARHGAP32A7KAX9 2087 aa0.49□□□□□ -2.33
VPS50-216ENST00000484954 NUP153P49790 1475 aaKnown RBP0.48□□□□□ -2.33
VPS50-216ENST00000484954 IGHV3-64A0A075B6Q5 118 aa0.48□□□□□ -2.33
VPS50-216ENST00000484954 RFPL4AA6NLU0 287 aa0.48□□□□□ -2.33
VPS50-216ENST00000484954 C2orf74A8MZ97 194 aa0.48□□□□□ -2.33
VPS50-216ENST00000484954 F5H768 121 aa0.48□□□□□ -2.33
VPS50-216ENST00000484954 RFPL4AL1F8VTS6 287 aa0.48□□□□□ -2.33
VPS50-216ENST00000484954 BHLHE40O14503 412 aa0.48□□□□□ -2.33
VPS50-216ENST00000484954 BIRC5O15392 142 aa0.48□□□□□ -2.33
VPS50-216ENST00000484954 HPGDSO60760 199 aa0.48□□□□□ -2.33
VPS50-216ENST00000484954 REG1AP05451 166 aa0.48□□□□□ -2.33
VPS50-216ENST00000484954 UGT2B7P16662 529 aa0.48□□□□□ -2.33
VPS50-216ENST00000484954 IFNGR2P38484 337 aa0.48□□□□□ -2.33
VPS50-216ENST00000484954 GABRA2P47869 451 aa0.48□□□□□ -2.33
VPS50-216ENST00000484954 CDK9P50750 372 aaKnown RBP0.48□□□□□ -2.33
VPS50-216ENST00000484954 RAP1GDS1P52306 607 aa0.48□□□□□ -2.33
VPS50-216ENST00000484954 SKP1P63208 163 aa0.48□□□□□ -2.33
VPS50-216ENST00000484954 HLA-DRB3P79483 266 aa0.48□□□□□ -2.33
VPS50-216ENST00000484954 HOXC5Q00444 222 aa0.48□□□□□ -2.33
VPS50-216ENST00000484954 HSP90B2PQ58FF3 399 aa0.48□□□□□ -2.33
VPS50-216ENST00000484954 PABPC1L2AQ5JQF8 200 aa0.48□□□□□ -2.33
VPS50-216ENST00000484954 LHFPL1Q86WI0 220 aa0.48□□□□□ -2.33
VPS50-216ENST00000484954 LRRC28Q86X40 367 aaPredicted RBP0.48□□□□□ -2.33
VPS50-216ENST00000484954 FUNDC1Q8IVP5 155 aa0.48□□□□□ -2.33
VPS50-216ENST00000484954 OR1L8Q8NGR8 309 aa0.48□□□□□ -2.33
VPS50-216ENST00000484954 OR5J2Q8NH18 312 aa0.48□□□□□ -2.33
VPS50-216ENST00000484954 MS4A6EQ96DS6 147 aa0.48□□□□□ -2.33
VPS50-216ENST00000484954 SMIM19Q96E16 107 aa0.48□□□□□ -2.33
VPS50-216ENST00000484954 ZNF514Q96K75 400 aaPredicted RBP0.48□□□□□ -2.33
VPS50-216ENST00000484954 MIEN1Q9BRT3 115 aa0.48□□□□□ -2.33
VPS50-216ENST00000484954 TMEM109Q9BVC6 243 aa0.48□□□□□ -2.33
VPS50-216ENST00000484954 DERL2Q9GZP9 239 aa0.48□□□□□ -2.33
VPS50-216ENST00000484954 HHLA3Q9XRX5 114 aa0.48□□□□□ -2.33
VPS50-216ENST00000484954 GMEB1Q9Y692 573 aa0.48□□□□□ -2.33
VPS50-216ENST00000484954 CUL9Q8IWT3 2517 aa0.48□□□□□ -2.33
VPS50-216ENST00000484954 RIMS2Q9UQ26 1411 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 A0A1W2PP64 1363 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 ERICH2A1L162 156 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 C5orf49A4QMS7 147 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 ITGB1BP1O14713 200 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 UBE2L6O14933 153 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 PGLYRP1O75594 196 aaPredicted RBP0.47□□□□□ -2.33
VPS50-216ENST00000484954 NPYP01303 97 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 IL6P05231 212 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 HLA-DQB2P05538 268 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 BPGMP07738 259 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 TFPTP0C1Z6 253 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 PET100P0DJ07 73 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 ALDH3A1P30838 453 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 G6PCP35575 357 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 MAGEA12P43365 314 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 RPL27AP46776 148 aaKnown RBP0.47□□□□□ -2.33
VPS50-216ENST00000484954 HINT1P49773 126 aaPredicted RBP0.47□□□□□ -2.33
VPS50-216ENST00000484954 TBPL1P62380 186 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 FKBP1AP62942 108 aaKnown RBP0.47□□□□□ -2.33
VPS50-216ENST00000484954 TNFAIP6P98066 277 aaPredicted RBP0.47□□□□□ -2.33
VPS50-216ENST00000484954 SLC38A11Q08AI6 406 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 UAP1Q16222 522 aaPredicted RBP0.47□□□□□ -2.33
VPS50-216ENST00000484954 MIAQ16674 131 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 SBSNQ6UWP8 590 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 BAP18Q8IXM2 172 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 C10orf126Q8N4M7 172 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 TMEM156Q8N614 296 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 NATD1Q8N6N6 113 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 OR51T1Q8NGJ9 327 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 LHFPL5Q8TAF8 219 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 ZNF675Q8TD23 568 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 ASB17Q8WXJ9 295 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 Q96M85 177 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 RETNLBQ9BQ08 111 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 C7orf50Q9BRJ6 194 aaKnown RBP0.47□□□□□ -2.33
VPS50-216ENST00000484954 UPF3BQ9BZI7 483 aaKnown RBP0.47□□□□□ -2.33
VPS50-216ENST00000484954 NDEL1Q9GZM8 345 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 TMEM222Q9H0R3 208 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 CHMP4BQ9H444 224 aaKnown RBP0.47□□□□□ -2.33
VPS50-216ENST00000484954 HES4Q9HCC6 221 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 PLEKHJ1Q9NW61 149 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 TAAR3PQ9P1P4 343 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 CFAP45Q9UL16 551 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 COQ4Q9Y3A0 265 aa0.47□□□□□ -2.33
VPS50-216ENST00000484954 DIDO1Q9BTC0 2240 aaKnown RBP0.47□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms