RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 OR4B1Q8NGF8 309 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 OR4D11Q8NGI4 311 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 OR51A2Q8NGJ7 313 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 OR5L2Q8NGL0 311 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 OR1P1Q8NH06 330 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 OR51A7Q8NH64 312 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 HIST1H2BHQ93079 126 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 DDIT4LQ96D03 193 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 C10orf35Q96D05 121 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 ZMYND19Q96E35 227 aaPredicted RBP4.07□□□□□ -1.76
USP40-213ENST00000483216 HIST1H2BNQ99877 126 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 HIST1H2BMQ99879 126 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 C20orf144Q9BQM9 153 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 MIEN1Q9BRT3 115 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 NUDT9Q9BW91 350 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 NMNAT2Q9BZQ4 307 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 MAP1LC3BQ9GZQ8 125 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 RAB33BQ9H082 229 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 LYRM4Q9HD34 91 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 EHFQ9NZC4 300 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 OR51B4Q9Y5P0 310 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 IER3IP1Q9Y5U9 82 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 WSB1Q9Y6I7 421 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 KIAA1671Q9BY89 1806 aa4.07□□□□□ -1.76
USP40-213ENST00000483216 COL4A6Q14031 1691 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 NSG1A0A0A6YYJ2 146 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 OR4C45A6NMZ5 311 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 TMEM250H0YL14 139 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 K7ERQ8 282 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 CDC42EP2O14613 210 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 GEMIN2O14893 280 aaKnown RBP4.06□□□□□ -1.76
USP40-213ENST00000483216 RRP8O43159 456 aaKnown RBP4.06□□□□□ -1.76
USP40-213ENST00000483216 CD160O95971 181 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 IGHV3-23P01764 117 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 APODP05090 189 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 CTSDP07339 412 aaPredicted RBP4.06□□□□□ -1.76
USP40-213ENST00000483216 ZNF735P0CB33 412 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 HIST1H1CP16403 213 aaKnown RBP4.06□□□□□ -1.76
USP40-213ENST00000483216 ZNF823P16415 610 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 FUT1P19526 365 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 ALOX5APP20292 161 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 GPR1P46091 355 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 TDGF1P3P51864 188 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 HSD17B7P56937 341 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 LSM6P62312 80 aaKnown RBP4.06□□□□□ -1.76
USP40-213ENST00000483216 RPL23AP62750 156 aaKnown RBP4.06□□□□□ -1.76
USP40-213ENST00000483216 BTN3A2P78410 334 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 EBPQ15125 230 aaKnown RBP4.06□□□□□ -1.76
USP40-213ENST00000483216 SHHQ15465 462 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 OR7A5Q15622 319 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 BEX5Q5H9J7 111 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 GLYATL3Q5SZD4 288 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 DCST2Q5T1A1 773 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 SLC25A24Q6NUK1 477 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 CLEC18BQ6UXF7 455 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 ZNF562Q6V9R5 426 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 ZNF836Q6ZNA1 936 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 MOB1BQ7L9L4 216 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 PNKDQ8N490 385 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 ZSCAN4Q8NAM6 433 aaPredicted RBP4.06□□□□□ -1.76
USP40-213ENST00000483216 OR5L1Q8NGL2 311 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 OR4K13Q8NH42 304 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 OR5B3Q8NH48 314 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 OTOSQ8NHW6 89 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 SCGB1C1Q8TD33 95 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 FGF14Q92915 247 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 FGGYQ96C11 551 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 SLC25A44Q96H78 314 aaPredicted RBP4.06□□□□□ -1.76
USP40-213ENST00000483216 OR8B4Q96RC9 309 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 SDF2Q99470 211 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 HIST1H2BLQ99880 126 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 AGMATQ9BSE5 352 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 TMEM208Q9BTX3 173 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 RNF126Q9BV68 326 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 KIR3DX1Q9H7L2 352 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 PLEKHF2Q9H8W4 249 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 CRLF2Q9HC73 371 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 FKBP11Q9NYL4 201 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 GSKIPQ9P0R6 139 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 NAT8Q9UHE5 227 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 OBSL1O75147 1896 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 LTBP2Q14767 1821 aa4.06□□□□□ -1.76
USP40-213ENST00000483216 PCM1Q15154 2024 aa4.05□□□□□ -1.76
USP40-213ENST00000483216 CEP290O15078 2479 aa4.05□□□□□ -1.76
USP40-213ENST00000483216 DENND4CQ5VZ89 1909 aa4.05□□□□□ -1.76
USP40-213ENST00000483216 ZNF106Q9H2Y7 1883 aaKnown RBP4.05□□□□□ -1.76
USP40-213ENST00000483216 TRBV9A0A0B4J1U6 114 aa4.05□□□□□ -1.76
USP40-213ENST00000483216 XKRY2A2RUG3 117 aa4.05□□□□□ -1.76
USP40-213ENST00000483216 GJE1A6NN92 205 aa4.05□□□□□ -1.76
USP40-213ENST00000483216 H7BYZ3 331 aa4.05□□□□□ -1.76
USP40-213ENST00000483216 K7EP13 123 aa4.05□□□□□ -1.76
USP40-213ENST00000483216 PIN1P1O15428 100 aa4.05□□□□□ -1.76
USP40-213ENST00000483216 ERI3O43414 337 aaKnown RBP4.05□□□□□ -1.76
USP40-213ENST00000483216 PITX3O75364 302 aa4.05□□□□□ -1.76
USP40-213ENST00000483216 UPK3AO75631 287 aa4.05□□□□□ -1.76
USP40-213ENST00000483216 NDUFA7O95182 113 aa4.05□□□□□ -1.76
USP40-213ENST00000483216 PPBPP02775 128 aa4.05□□□□□ -1.76
USP40-213ENST00000483216 TRGC2P03986 189 aa4.05□□□□□ -1.76
USP40-213ENST00000483216 TYMSP04818 313 aa4.05□□□□□ -1.76
USP40-213ENST00000483216 TRGC1P0CF51 173 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms