RNA–Protein interactions for RNA: ENST00000474455.1

SMIM11A-204, Transcript of small integral membrane protein 11A, humanhuman

TSL 1 (best)

Gene SMIM11A, Length 1,857 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM11A-204ENST00000474455 ZNF727A8MUV8 499 aa17.3■□□□□ 0.36
SMIM11A-204ENST00000474455 YIF1AO95070 293 aa17.3■□□□□ 0.36
SMIM11A-204ENST00000474455 WNT2P09544 360 aa17.3■□□□□ 0.36
SMIM11A-204ENST00000474455 PGA5P0DJD9 388 aa17.3■□□□□ 0.36
SMIM11A-204ENST00000474455 RPL23AP62750 156 aaKnown RBP17.3■□□□□ 0.36
SMIM11A-204ENST00000474455 HLA-DRB3P79483 266 aa17.3■□□□□ 0.36
SMIM11A-204ENST00000474455 FAM201AQ5SY85 155 aa17.3■□□□□ 0.36
SMIM11A-204ENST00000474455 STX12Q86Y82 276 aa17.3■□□□□ 0.36
SMIM11A-204ENST00000474455 H1FOOQ8IZA3 346 aaPredicted RBP17.3■□□□□ 0.36
SMIM11A-204ENST00000474455 GAPTQ8N292 157 aa17.3■□□□□ 0.36
SMIM11A-204ENST00000474455 RNF150Q9ULK6 438 aa17.3■□□□□ 0.36
SMIM11A-204ENST00000474455 IFNA5P01569 189 aa17.29■□□□□ 0.36
SMIM11A-204ENST00000474455 TFF1P04155 84 aa17.29■□□□□ 0.36
SMIM11A-204ENST00000474455 CXCL1P09341 107 aa17.29■□□□□ 0.36
SMIM11A-204ENST00000474455 EGR1P18146 543 aa17.29■□□□□ 0.36
SMIM11A-204ENST00000474455 ERVK11-1P61568 191 aa17.29■□□□□ 0.36
SMIM11A-204ENST00000474455 ZNF818PQ6ZRF7 136 aa17.29■□□□□ 0.36
SMIM11A-204ENST00000474455 MAGT1Q9H0U3 335 aa17.29■□□□□ 0.36
SMIM11A-204ENST00000474455 CBLN4Q9NTU7 201 aa17.29■□□□□ 0.36
SMIM11A-204ENST00000474455 FASNP49327 2511 aaKnown RBP17.29■□□□□ 0.36
SMIM11A-204ENST00000474455 A0A1B0GU03 582 aa17.29■□□□□ 0.36
SMIM11A-204ENST00000474455 IFITM10A6NMD0 228 aa17.29■□□□□ 0.36
SMIM11A-204ENST00000474455 CHST1O43916 411 aa17.29■□□□□ 0.36
SMIM11A-204ENST00000474455 ADH4P08319 380 aa17.29■□□□□ 0.36
SMIM11A-204ENST00000474455 FGF12P61328 243 aa17.29■□□□□ 0.36
SMIM11A-204ENST00000474455 LRRC29Q8WV35 223 aa17.29■□□□□ 0.36
SMIM11A-204ENST00000474455 RAB40CQ96S21 281 aa17.29■□□□□ 0.36
SMIM11A-204ENST00000474455 MS4A5Q9H3V2 200 aa17.29■□□□□ 0.36
SMIM11A-204ENST00000474455 KIAA2026Q5HYC2 2103 aa17.28■□□□□ 0.36
SMIM11A-204ENST00000474455 CYB5R3P00387 301 aaPredicted RBP17.28■□□□□ 0.36
SMIM11A-204ENST00000474455 CD55P08174 381 aa17.28■□□□□ 0.36
SMIM11A-204ENST00000474455 TNFSF4P23510 183 aa17.28■□□□□ 0.36
SMIM11A-204ENST00000474455 RND2P52198 227 aa17.28■□□□□ 0.36
SMIM11A-204ENST00000474455 POLDIP2Q9Y2S7 368 aa17.28■□□□□ 0.36
SMIM11A-204ENST00000474455 CST7O76096 145 aa17.27■□□□□ 0.36
SMIM11A-204ENST00000474455 LY6HO94772 140 aa17.27■□□□□ 0.36
SMIM11A-204ENST00000474455 TMEM50AO95807 157 aa17.27■□□□□ 0.36
SMIM11A-204ENST00000474455 GATA4P43694 442 aa17.27■□□□□ 0.36
SMIM11A-204ENST00000474455 MZT1Q08AG7 82 aa17.27■□□□□ 0.36
SMIM11A-204ENST00000474455 PYY3Q5JQD4 70 aa17.27■□□□□ 0.36
SMIM11A-204ENST00000474455 LINC00596Q86U02 117 aa17.27■□□□□ 0.36
SMIM11A-204ENST00000474455 FAM58AQ8N1B3 248 aa17.27■□□□□ 0.36
SMIM11A-204ENST00000474455 GCSAMQ8N6F7 178 aa17.27■□□□□ 0.36
SMIM11A-204ENST00000474455 SAP30LQ9HAJ7 183 aa17.27■□□□□ 0.36
SMIM11A-204ENST00000474455 RFNGQ9Y644 331 aa17.27■□□□□ 0.36
SMIM11A-204ENST00000474455 TRBV6-6A0A0A6YYG2 114 aa17.27■□□□□ 0.35
SMIM11A-204ENST00000474455 LYNX1G3V0Z9 82 aa17.27■□□□□ 0.35
SMIM11A-204ENST00000474455 PPP1R2P9O14990 202 aa17.27■□□□□ 0.35
SMIM11A-204ENST00000474455 HIST1H2BKO60814 126 aa17.27■□□□□ 0.35
SMIM11A-204ENST00000474455 HIST1H2BJP06899 126 aa17.27■□□□□ 0.35
SMIM11A-204ENST00000474455 LYNX1P0DP58 116 aa17.27■□□□□ 0.35
SMIM11A-204ENST00000474455 COX6B1P14854 86 aa17.27■□□□□ 0.35
SMIM11A-204ENST00000474455 HIST1H2BOP23527 126 aa17.27■□□□□ 0.35
SMIM11A-204ENST00000474455 HIST1H2BBP33778 126 aa17.27■□□□□ 0.35
SMIM11A-204ENST00000474455 CEBPDP49716 269 aaPredicted RBP17.27■□□□□ 0.35
SMIM11A-204ENST00000474455 PAX9P55771 341 aa17.27■□□□□ 0.35
SMIM11A-204ENST00000474455 HIST1H2BDP58876 126 aa17.27■□□□□ 0.35
SMIM11A-204ENST00000474455 HIST1H2BCP62807 126 aa17.27■□□□□ 0.35
SMIM11A-204ENST00000474455 HIST2H2BEQ16778 126 aa17.27■□□□□ 0.35
SMIM11A-204ENST00000474455 HIST2H2BFQ5QNW6 126 aaPredicted RBP17.27■□□□□ 0.35
SMIM11A-204ENST00000474455 DTX2Q86UW9 622 aa17.27■□□□□ 0.35
SMIM11A-204ENST00000474455 C1orf87Q8N0U7 546 aa17.27■□□□□ 0.35
SMIM11A-204ENST00000474455 ZNF295-AS1Q8N0V1 137 aa17.27■□□□□ 0.35
SMIM11A-204ENST00000474455 MBD3L1Q8WWY6 194 aa17.27■□□□□ 0.35
SMIM11A-204ENST00000474455 HIST1H2BHQ93079 126 aa17.27■□□□□ 0.35
SMIM11A-204ENST00000474455 P2RX4Q99571 388 aa17.27■□□□□ 0.35
SMIM11A-204ENST00000474455 HIST1H2BNQ99877 126 aa17.27■□□□□ 0.35
SMIM11A-204ENST00000474455 HIST1H2BMQ99879 126 aa17.27■□□□□ 0.35
SMIM11A-204ENST00000474455 PSMG3Q9BT73 122 aaPredicted RBP17.27■□□□□ 0.35
SMIM11A-204ENST00000474455 PPP1R3CQ9UQK1 317 aa17.27■□□□□ 0.35
SMIM11A-204ENST00000474455 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP17.26■□□□□ 0.35
SMIM11A-204ENST00000474455 NXPH2O95156 264 aa17.26■□□□□ 0.35
SMIM11A-204ENST00000474455 EPHA1P21709 976 aa17.26■□□□□ 0.35
SMIM11A-204ENST00000474455 CDKN1AP38936 164 aa17.26■□□□□ 0.35
SMIM11A-204ENST00000474455 ERVFRD-1P60508 538 aa17.26■□□□□ 0.35
SMIM11A-204ENST00000474455 HIST2H2BCQ6DN03 193 aa17.26■□□□□ 0.35
SMIM11A-204ENST00000474455 DIRC2Q96SL1 478 aa17.26■□□□□ 0.35
SMIM11A-204ENST00000474455 PFDN5Q99471 154 aa17.26■□□□□ 0.35
SMIM11A-204ENST00000474455 ASH1LQ9NR48 2969 aaKnown RBP17.26■□□□□ 0.35
SMIM11A-204ENST00000474455 ARID1AO14497 2285 aa17.26■□□□□ 0.35
SMIM11A-204ENST00000474455 CEBPGP53567 150 aa17.25■□□□□ 0.35
SMIM11A-204ENST00000474455 ZNF343Q6P1L6 599 aa17.25■□□□□ 0.35
SMIM11A-204ENST00000474455 CTDSP1Q9GZU7 261 aa17.25■□□□□ 0.35
SMIM11A-204ENST00000474455 HES4Q9HCC6 221 aa17.25■□□□□ 0.35
SMIM11A-204ENST00000474455 IGHV3OR15-7A0A075B7D8 119 aa17.24■□□□□ 0.35
SMIM11A-204ENST00000474455 CYB5BO43169 146 aa17.24■□□□□ 0.35
SMIM11A-204ENST00000474455 PGLYRP1O75594 196 aaPredicted RBP17.24■□□□□ 0.35
SMIM11A-204ENST00000474455 LHBP01229 141 aa17.24■□□□□ 0.35
SMIM11A-204ENST00000474455 SCTP09683 121 aa17.24■□□□□ 0.35
SMIM11A-204ENST00000474455 RUNX1Q01196 453 aa17.24■□□□□ 0.35
SMIM11A-204ENST00000474455 HIST3H2BBQ8N257 126 aa17.24■□□□□ 0.35
SMIM11A-204ENST00000474455 TMEM217Q8N7C4 229 aa17.24■□□□□ 0.35
SMIM11A-204ENST00000474455 SCGB1C1Q8TD33 95 aa17.24■□□□□ 0.35
SMIM11A-204ENST00000474455 RCC1LQ96I51 464 aaKnown RBP17.24■□□□□ 0.35
SMIM11A-204ENST00000474455 CCL28Q9NRJ3 127 aa17.24■□□□□ 0.35
SMIM11A-204ENST00000474455 GFOD1Q9NXC2 390 aa17.24■□□□□ 0.35
SMIM11A-204ENST00000474455 TGIF2-C20orf24A0A0A6YYL0 155 aa17.24■□□□□ 0.35
SMIM11A-204ENST00000474455 SRRM5B3KS81 715 aa17.24■□□□□ 0.35
SMIM11A-204ENST00000474455 CLDN34H7C241 214 aa17.24■□□□□ 0.35
SMIM11A-204ENST00000474455 NDUFS7O75251 213 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms