RNA–Protein interactions for RNA: ENST00000457422.6

CCDC43-202, Transcript of coiled-coil domain containing 43, humanhuman

TSL 1 (best) BASIC

Gene CCDC43, Length 2,058 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-202ENST00000457422 SPINK9Q5DT21 86 aa13.79□□□□□ -0.2
CCDC43-202ENST00000457422 SSX8Q7RTT4 187 aa13.79□□□□□ -0.2
CCDC43-202ENST00000457422 WFDC8Q8IUA0 241 aa13.79□□□□□ -0.2
CCDC43-202ENST00000457422 SPACA3Q8IXA5 215 aa13.79□□□□□ -0.2
CCDC43-202ENST00000457422 OR10P1Q8NGE3 313 aa13.79□□□□□ -0.2
CCDC43-202ENST00000457422 GAFA1Q96PS6 74 aa13.79□□□□□ -0.2
CCDC43-202ENST00000457422 GFOD1Q9NXC2 390 aa13.79□□□□□ -0.2
CCDC43-202ENST00000457422 CISD1Q9NZ45 108 aaKnown RBP13.79□□□□□ -0.2
CCDC43-202ENST00000457422 JKAMPQ9P055 326 aa13.79□□□□□ -0.2
CCDC43-202ENST00000457422 ZNF835Q9Y2P0 537 aa13.79□□□□□ -0.2
CCDC43-202ENST00000457422 DOCK11Q5JSL3 2073 aa13.79□□□□□ -0.2
CCDC43-202ENST00000457422 KBTBD11-OT1A0A1B0GTJ5 212 aa13.79□□□□□ -0.2
CCDC43-202ENST00000457422 CEBPZOSA8MTT3 80 aa13.79□□□□□ -0.2
CCDC43-202ENST00000457422 SLC31A2O15432 143 aa13.79□□□□□ -0.2
CCDC43-202ENST00000457422 NDUFA2O43678 99 aa13.79□□□□□ -0.2
CCDC43-202ENST00000457422 CD55P08174 381 aa13.79□□□□□ -0.2
CCDC43-202ENST00000457422 GNB2P62879 340 aa13.79□□□□□ -0.2
CCDC43-202ENST00000457422 ACACAQ13085 2346 aa13.79□□□□□ -0.2
CCDC43-202ENST00000457422 ATMQ13315 3056 aa13.79□□□□□ -0.2
CCDC43-202ENST00000457422 PMS2P11Q13670 270 aa13.79□□□□□ -0.2
CCDC43-202ENST00000457422 PDLIM3Q53GG5 364 aaPredicted RBP13.79□□□□□ -0.2
CCDC43-202ENST00000457422 UTF1Q5T230 341 aa13.79□□□□□ -0.2
CCDC43-202ENST00000457422 TEX36Q5VZQ5 186 aa13.79□□□□□ -0.2
CCDC43-202ENST00000457422 GFRALQ6UXV0 394 aa13.79□□□□□ -0.2
CCDC43-202ENST00000457422 SSX7Q7RTT5 188 aa13.79□□□□□ -0.2
CCDC43-202ENST00000457422 CYB561D1Q8N8Q1 229 aa13.79□□□□□ -0.2
CCDC43-202ENST00000457422 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.79□□□□□ -0.2
CCDC43-202ENST00000457422 OR52E5Q8NH55 327 aa13.79□□□□□ -0.2
CCDC43-202ENST00000457422 DDB2Q92466 427 aa13.79□□□□□ -0.2
CCDC43-202ENST00000457422 PUS1Q9Y606 427 aaKnown RBP eCLIP13.79□□□□□ -0.2
CCDC43-202ENST00000457422 MAP1BP46821 2468 aaKnown RBP13.79□□□□□ -0.2
CCDC43-202ENST00000457422 ZGRF1Q86YA3 2104 aa13.78□□□□□ -0.2
CCDC43-202ENST00000457422 DYSFO75923 2080 aa13.78□□□□□ -0.2
CCDC43-202ENST00000457422 BCL2P10415 239 aa13.78□□□□□ -0.2
CCDC43-202ENST00000457422 TBR1Q16650 682 aa13.78□□□□□ -0.2
CCDC43-202ENST00000457422 ZNF788Q6ZQV5 615 aa13.78□□□□□ -0.2
CCDC43-202ENST00000457422 DEFB108BQ8NET1 73 aa13.78□□□□□ -0.2
CCDC43-202ENST00000457422 DIRC2Q96SL1 478 aa13.78□□□□□ -0.2
CCDC43-202ENST00000457422 QTRT1Q9BXR0 403 aaKnown RBP13.78□□□□□ -0.2
CCDC43-202ENST00000457422 ZNF665Q9H7R5 613 aa13.78□□□□□ -0.2
CCDC43-202ENST00000457422 LINC00574Q9H8X3 128 aa13.78□□□□□ -0.2
CCDC43-202ENST00000457422 KLF2Q9Y5W3 355 aaPredicted RBP13.78□□□□□ -0.2
CCDC43-202ENST00000457422 TRGV10A0A0A0MS01 117 aa13.78□□□□□ -0.2
CCDC43-202ENST00000457422 H3BQ15 152 aa13.78□□□□□ -0.2
CCDC43-202ENST00000457422 DAOP14920 347 aa13.78□□□□□ -0.2
CCDC43-202ENST00000457422 MDKP21741 143 aaPredicted RBP13.78□□□□□ -0.2
CCDC43-202ENST00000457422 ELLP55199 621 aaPredicted RBP13.78□□□□□ -0.2
CCDC43-202ENST00000457422 OR2B8PP59922 312 aa13.78□□□□□ -0.2
CCDC43-202ENST00000457422 RPS16P62249 146 aaKnown RBP13.78□□□□□ -0.2
CCDC43-202ENST00000457422 TMEM30BQ3MIR4 351 aa13.78□□□□□ -0.2
CCDC43-202ENST00000457422 LCN15Q6UWW0 184 aa13.78□□□□□ -0.2
CCDC43-202ENST00000457422 TGIF2LYQ8IUE0 185 aa13.78□□□□□ -0.2
CCDC43-202ENST00000457422 LEAP2Q969E1 77 aa13.78□□□□□ -0.2
CCDC43-202ENST00000457422 GNG13Q9P2W3 67 aa13.78□□□□□ -0.2
CCDC43-202ENST00000457422 ICE1Q9Y2F5 2266 aa13.77□□□□□ -0.2
CCDC43-202ENST00000457422 FBP1P09467 338 aa13.77□□□□□ -0.21
CCDC43-202ENST00000457422 NQO2P16083 231 aa13.77□□□□□ -0.21
CCDC43-202ENST00000457422 TCF23Q7RTU1 214 aa13.77□□□□□ -0.21
CCDC43-202ENST00000457422 CORO2AQ92828 525 aa13.77□□□□□ -0.21
CCDC43-202ENST00000457422 S1PR3Q99500 378 aa13.77□□□□□ -0.21
CCDC43-202ENST00000457422 DCAF16Q9NXF7 216 aa13.77□□□□□ -0.21
CCDC43-202ENST00000457422 PTPRZ1P23471 2315 aaPredicted RBP13.77□□□□□ -0.21
CCDC43-202ENST00000457422 DPRXA6NFQ7 191 aa13.76□□□□□ -0.21
CCDC43-202ENST00000457422 ZNF729A6NN14 1252 aaPredicted RBP13.76□□□□□ -0.21
CCDC43-202ENST00000457422 C15orf62A8K5M9 175 aa13.76□□□□□ -0.21
CCDC43-202ENST00000457422 MBP02144 154 aa13.76□□□□□ -0.21
CCDC43-202ENST00000457422 GYPAP02724 150 aa13.76□□□□□ -0.21
CCDC43-202ENST00000457422 ARG1P05089 322 aa13.76□□□□□ -0.21
CCDC43-202ENST00000457422 THBDP07204 575 aa13.76□□□□□ -0.21
CCDC43-202ENST00000457422 MAS1LP35410 378 aa13.76□□□□□ -0.21
CCDC43-202ENST00000457422 CEBPGP53567 150 aa13.76□□□□□ -0.21
CCDC43-202ENST00000457422 SPCS3P61009 180 aa13.76□□□□□ -0.21
CCDC43-202ENST00000457422 PRR30Q53SZ7 412 aaPredicted RBP13.76□□□□□ -0.21
CCDC43-202ENST00000457422 CT45A1Q5HYN5 189 aa13.76□□□□□ -0.21
CCDC43-202ENST00000457422 PRAMEF5Q5TYX0 476 aa13.76□□□□□ -0.21
CCDC43-202ENST00000457422 ZNF429Q86V71 674 aa13.76□□□□□ -0.21
CCDC43-202ENST00000457422 CT45A3Q8NHU0 189 aa13.76□□□□□ -0.21
CCDC43-202ENST00000457422 P2RX4Q99571 388 aa13.76□□□□□ -0.21
CCDC43-202ENST00000457422 CCL13Q99616 98 aa13.76□□□□□ -0.21
CCDC43-202ENST00000457422 MAP1LC3B2A6NCE7 125 aa13.76□□□□□ -0.21
CCDC43-202ENST00000457422 IGKV1D-33P01593 117 aa13.76□□□□□ -0.21
CCDC43-202ENST00000457422 IGKV1-33P01594 117 aa13.76□□□□□ -0.21
CCDC43-202ENST00000457422 IRF2P14316 349 aa13.76□□□□□ -0.21
CCDC43-202ENST00000457422 TNFRSF1AP19438 455 aa13.76□□□□□ -0.21
CCDC43-202ENST00000457422 FGF7P21781 194 aa13.76□□□□□ -0.21
CCDC43-202ENST00000457422 ERVK-16P61578 105 aa13.76□□□□□ -0.21
CCDC43-202ENST00000457422 HNF4GQ14541 408 aa13.76□□□□□ -0.21
CCDC43-202ENST00000457422 ADIPOQQ15848 244 aa13.76□□□□□ -0.21
CCDC43-202ENST00000457422 ACSM6Q6P461 480 aa13.76□□□□□ -0.21
CCDC43-202ENST00000457422 C1orf229Q6ZS94 237 aaPredicted RBP13.76□□□□□ -0.21
CCDC43-202ENST00000457422 SSX9Q7RTT3 188 aa13.76□□□□□ -0.21
CCDC43-202ENST00000457422 SLC35E3Q7Z769 313 aa13.76□□□□□ -0.21
CCDC43-202ENST00000457422 RPP25LQ8N5L8 163 aaKnown RBP13.76□□□□□ -0.21
CCDC43-202ENST00000457422 FAM216BQ8N7L0 139 aa13.76□□□□□ -0.21
CCDC43-202ENST00000457422 ZNF439Q8NDP4 499 aa13.76□□□□□ -0.21
CCDC43-202ENST00000457422 ISOC2Q96AB3 205 aa13.76□□□□□ -0.21
CCDC43-202ENST00000457422 RAB39BQ96DA2 213 aa13.76□□□□□ -0.21
CCDC43-202ENST00000457422 NIPSNAP3BQ9BS92 247 aa13.76□□□□□ -0.21
CCDC43-202ENST00000457422 MAP1LC3BQ9GZQ8 125 aa13.76□□□□□ -0.21
CCDC43-202ENST00000457422 BIN3Q9NQY0 253 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms