RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 NTN1O95631 604 aa4.42□□□□□ -1.7
VPS41-209ENST00000457055 CSN2P05814 226 aa4.42□□□□□ -1.7
VPS41-209ENST00000457055 NMBP08949 121 aa4.42□□□□□ -1.7
VPS41-209ENST00000457055 LGALS1P09382 135 aaKnown RBP4.42□□□□□ -1.7
VPS41-209ENST00000457055 GZMBP10144 247 aa4.42□□□□□ -1.7
VPS41-209ENST00000457055 MARCKSL1P49006 195 aa4.42□□□□□ -1.7
VPS41-209ENST00000457055 UBE2E1P51965 193 aa4.42□□□□□ -1.7
VPS41-209ENST00000457055 NDUFA6P56556 154 aa4.42□□□□□ -1.7
VPS41-209ENST00000457055 TIMM10P62072 90 aa4.42□□□□□ -1.7
VPS41-209ENST00000457055 MYL5Q02045 173 aa4.42□□□□□ -1.7
VPS41-209ENST00000457055 TMEM267Q0VDI3 215 aaPredicted RBP4.42□□□□□ -1.7
VPS41-209ENST00000457055 TIGITQ495A1 244 aa4.42□□□□□ -1.7
VPS41-209ENST00000457055 STAC2Q6ZMT1 411 aa4.42□□□□□ -1.7
VPS41-209ENST00000457055 HOGA1Q86XE5 327 aa4.42□□□□□ -1.7
VPS41-209ENST00000457055 CBLN2Q8IUK8 224 aa4.42□□□□□ -1.7
VPS41-209ENST00000457055 ZNF695Q8IW36 515 aa4.42□□□□□ -1.7
VPS41-209ENST00000457055 HIST3H2BBQ8N257 126 aa4.42□□□□□ -1.7
VPS41-209ENST00000457055 GAPTQ8N292 157 aa4.42□□□□□ -1.7
VPS41-209ENST00000457055 GBGT1Q8N5D6 347 aa4.42□□□□□ -1.7
VPS41-209ENST00000457055 RBMXL3Q8N7X1 1067 aaKnown RBP4.42□□□□□ -1.7
VPS41-209ENST00000457055 SLC35G3Q8N808 338 aa4.42□□□□□ -1.7
VPS41-209ENST00000457055 ZNF615Q8N8J6 731 aa4.42□□□□□ -1.7
VPS41-209ENST00000457055 SUMF2Q8NBJ7 301 aa4.42□□□□□ -1.7
VPS41-209ENST00000457055 PLPP5Q8NEB5 264 aa4.42□□□□□ -1.7
VPS41-209ENST00000457055 C15orf40Q8WUR7 153 aa4.42□□□□□ -1.7
VPS41-209ENST00000457055 ARPC1AQ92747 370 aa4.42□□□□□ -1.7
VPS41-209ENST00000457055 TMEM106AQ96A25 262 aa4.42□□□□□ -1.7
VPS41-209ENST00000457055 KAZALD1Q96I82 304 aa4.42□□□□□ -1.7
VPS41-209ENST00000457055 UBE2E2Q96LR5 201 aa4.42□□□□□ -1.7
VPS41-209ENST00000457055 EMC6Q9BV81 110 aa4.42□□□□□ -1.7
VPS41-209ENST00000457055 C1QTNF6Q9BXI9 259 aa4.42□□□□□ -1.7
VPS41-209ENST00000457055 PRSS22Q9GZN4 317 aa4.42□□□□□ -1.7
VPS41-209ENST00000457055 CHST6Q9GZX3 395 aa4.42□□□□□ -1.7
VPS41-209ENST00000457055 ZNF106Q9H2Y7 1883 aaKnown RBP4.42□□□□□ -1.7
VPS41-209ENST00000457055 APOBEC3GQ9HC16 384 aaKnown RBP4.42□□□□□ -1.7
VPS41-209ENST00000457055 TMEM30AQ9NV96 361 aa4.42□□□□□ -1.7
VPS41-209ENST00000457055 TAS2R8Q9NYW2 309 aa4.42□□□□□ -1.7
VPS41-209ENST00000457055 DNAJC27Q9NZQ0 273 aa4.42□□□□□ -1.7
VPS41-209ENST00000457055 IL36AQ9UHA7 158 aa4.42□□□□□ -1.7
VPS41-209ENST00000457055 R4GN57 208 aa4.42□□□□□ -1.7
VPS41-209ENST00000457055 GCN1Q92616 2671 aaKnown RBP4.42□□□□□ -1.7
VPS41-209ENST00000457055 ROBO3Q96MS0 1386 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 FRYLO94915 3013 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 LOC102725191A0A1B0GVB3 256 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 SMIM35A0A1B0GVV1 85 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 RBFOX3A6NFN3 312 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 TMEM212A6NML5 194 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 ZNF850A8MQ14 1090 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 ZNF724A8MTY0 619 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 BBIP1A8MTZ0 92 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 FCN1O00602 326 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 ZNF682O95780 498 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 APOHP02749 345 aaPredicted RBP4.41□□□□□ -1.7
VPS41-209ENST00000457055 FGF1P05230 155 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 GPX1P07203 203 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 CTSDP07339 412 aaPredicted RBP4.41□□□□□ -1.7
VPS41-209ENST00000457055 SOD3P08294 240 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 CD14P08571 375 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 ERGP11308 486 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 CPMP14384 443 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 SPNP16150 400 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 CXCL3P19876 107 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 OR10J1P30954 320 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 TPPP2P59282 170 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 UBE2NP61088 152 aaKnown RBP4.41□□□□□ -1.7
VPS41-209ENST00000457055 FKBP1AP62942 108 aaKnown RBP4.41□□□□□ -1.7
VPS41-209ENST00000457055 CX3CL1P78423 397 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 BTG2P78543 158 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 DHRS2Q13268 280 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 KHDC3LQ587J8 217 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 OR5AP2Q8NGF4 316 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 OR10D3Q8NH80 312 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 FGFBP3Q8TAT2 258 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 C11orf45Q8TAV5 145 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 FNDC9Q8TBE3 224 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 AP1S3Q96PC3 154 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 CIB3Q96Q77 187 aaPredicted RBP4.41□□□□□ -1.7
VPS41-209ENST00000457055 RARRES2Q99969 163 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 ZNF670Q9BS34 389 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 ADAT1Q9BUB4 502 aaKnown RBP4.41□□□□□ -1.7
VPS41-209ENST00000457055 LRRC61Q9BV99 259 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 PBOV1Q9GZY1 135 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 SLC25A31Q9H0C2 315 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 TMEM222Q9H0R3 208 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 ASF1BQ9NVP2 202 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 FBXL12Q9NXK8 326 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 NUFIP1Q9UHK0 495 aaKnown RBP4.41□□□□□ -1.7
VPS41-209ENST00000457055 VAX2Q9UIW0 290 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 SIP14410 1827 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 FOCADQ5VW36 1801 aa4.41□□□□□ -1.7
VPS41-209ENST00000457055 ZFYVE26Q68DK2 2539 aa4.4□□□□□ -1.7
VPS41-209ENST00000457055 SIPA1L1O43166 1804 aa4.4□□□□□ -1.7
VPS41-209ENST00000457055 TEX50A0A1B0GTY4 177 aa4.4□□□□□ -1.71
VPS41-209ENST00000457055 IFITM10A6NMD0 228 aa4.4□□□□□ -1.71
VPS41-209ENST00000457055 ZNF705GA8MUZ8 300 aaPredicted RBP4.4□□□□□ -1.71
VPS41-209ENST00000457055 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP4.4□□□□□ -1.71
VPS41-209ENST00000457055 CDC42EP2O14613 210 aa4.4□□□□□ -1.71
VPS41-209ENST00000457055 BCL2L11O43521 198 aa4.4□□□□□ -1.71
VPS41-209ENST00000457055 SHBGP04278 402 aa4.4□□□□□ -1.71
VPS41-209ENST00000457055 PGAM2P15259 253 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms