RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 ADAD2Q8NCV1 583 aaKnown RBP12.64□□□□□ -0.39
USP40-206ENST00000443711 DUSP18Q8NEJ0 188 aa12.64□□□□□ -0.39
USP40-206ENST00000443711 OR4C13Q8NGP0 309 aa12.64□□□□□ -0.39
USP40-206ENST00000443711 OR4S2Q8NH73 311 aa12.64□□□□□ -0.39
USP40-206ENST00000443711 FAM212BQ9NTI7 297 aaPredicted RBP12.64□□□□□ -0.39
USP40-206ENST00000443711 VPREB3Q9UKI3 123 aa12.64□□□□□ -0.39
USP40-206ENST00000443711 FLVCR2Q9UPI3 526 aa12.64□□□□□ -0.39
USP40-206ENST00000443711 KCNIP3Q9Y2W7 256 aa12.64□□□□□ -0.39
USP40-206ENST00000443711 NUBP2Q9Y5Y2 271 aa12.64□□□□□ -0.39
USP40-206ENST00000443711 SVEP1Q4LDE5 3571 aa12.63□□□□□ -0.39
USP40-206ENST00000443711 C3orf85A0A1B0GTC6 90 aa12.63□□□□□ -0.39
USP40-206ENST00000443711 CRYM-AS1A6NIL9 109 aa12.63□□□□□ -0.39
USP40-206ENST00000443711 CLDN34H7C241 214 aa12.63□□□□□ -0.39
USP40-206ENST00000443711 ARPC1BO15143 372 aaKnown RBP12.63□□□□□ -0.39
USP40-206ENST00000443711 B3GALNT1O75752 331 aa12.63□□□□□ -0.39
USP40-206ENST00000443711 CRYZL1O95825 349 aa12.63□□□□□ -0.39
USP40-206ENST00000443711 LGALS7P47929 136 aa12.63□□□□□ -0.39
USP40-206ENST00000443711 BRWD1-AS2P59051 145 aa12.63□□□□□ -0.39
USP40-206ENST00000443711 RPS16P62249 146 aaKnown RBP12.63□□□□□ -0.39
USP40-206ENST00000443711 TMEM177Q53S58 311 aa12.63□□□□□ -0.39
USP40-206ENST00000443711 TMEM128Q5BJH2 165 aa12.63□□□□□ -0.39
USP40-206ENST00000443711 CCBE1Q6UXH8 406 aaPredicted RBP12.63□□□□□ -0.39
USP40-206ENST00000443711 C16orf82Q7Z2V1 217 aa12.63□□□□□ -0.39
USP40-206ENST00000443711 NRARPQ7Z6K4 114 aa12.63□□□□□ -0.39
USP40-206ENST00000443711 SLC25A42Q86VD7 318 aa12.63□□□□□ -0.39
USP40-206ENST00000443711 Q8N6K4 173 aa12.63□□□□□ -0.39
USP40-206ENST00000443711 OR8H1Q8NGG4 311 aa12.63□□□□□ -0.39
USP40-206ENST00000443711 OSR1Q8TAX0 266 aaPredicted RBP12.63□□□□□ -0.39
USP40-206ENST00000443711 TMEM230Q96A57 120 aa12.63□□□□□ -0.39
USP40-206ENST00000443711 RBM14Q96PK6 669 aaKnown RBP12.63□□□□□ -0.39
USP40-206ENST00000443711 DUX5Q96PT3 197 aa12.63□□□□□ -0.39
USP40-206ENST00000443711 C20orf85Q9H1P6 137 aa12.63□□□□□ -0.39
USP40-206ENST00000443711 NAA60Q9H7X0 242 aa12.63□□□□□ -0.39
USP40-206ENST00000443711 ESM1Q9NQ30 184 aa12.63□□□□□ -0.39
USP40-206ENST00000443711 NIPBLQ6KC79 2804 aaeCLIP12.62□□□□□ -0.39
USP40-206ENST00000443711 H0Y980 276 aa12.62□□□□□ -0.39
USP40-206ENST00000443711 OR2F2O95006 317 aa12.62□□□□□ -0.39
USP40-206ENST00000443711 IGKV1-16P04430 117 aa12.62□□□□□ -0.39
USP40-206ENST00000443711 H2AFB2P0C5Z0 115 aa12.62□□□□□ -0.39
USP40-206ENST00000443711 LPAR6P43657 344 aa12.62□□□□□ -0.39
USP40-206ENST00000443711 UBE2MP61081 183 aaKnown RBP12.62□□□□□ -0.39
USP40-206ENST00000443711 TMEM219Q86XT9 240 aa12.62□□□□□ -0.39
USP40-206ENST00000443711 RBMXL1Q96E39 390 aaKnown RBP12.62□□□□□ -0.39
USP40-206ENST00000443711 TSNAXQ99598 290 aaKnown RBP12.62□□□□□ -0.39
USP40-206ENST00000443711 SLC25A33Q9BSK2 321 aa12.62□□□□□ -0.39
USP40-206ENST00000443711 CHIAQ9BZP6 476 aa12.62□□□□□ -0.39
USP40-206ENST00000443711 RAB18Q9NP72 206 aa12.62□□□□□ -0.39
USP40-206ENST00000443711 NUDT15Q9NV35 164 aa12.62□□□□□ -0.39
USP40-206ENST00000443711 C1RLQ9NZP8 487 aa12.62□□□□□ -0.39
USP40-206ENST00000443711 TRAV6A0A075B6T7 132 aa12.61□□□□□ -0.39
USP40-206ENST00000443711 SHOXO15266 292 aa12.61□□□□□ -0.39
USP40-206ENST00000443711 PTTG1O95997 202 aa12.61□□□□□ -0.39
USP40-206ENST00000443711 HPRT1P00492 218 aa12.61□□□□□ -0.39
USP40-206ENST00000443711 SERPINE2P07093 398 aa12.61□□□□□ -0.39
USP40-206ENST00000443711 DHODHQ02127 395 aa12.61□□□□□ -0.39
USP40-206ENST00000443711 ZNF585BQ52M93 769 aa12.61□□□□□ -0.39
USP40-206ENST00000443711 FBLN7Q53RD9 439 aa12.61□□□□□ -0.39
USP40-206ENST00000443711 PLET1Q6UQ28 207 aa12.61□□□□□ -0.39
USP40-206ENST00000443711 RITA1Q96K30 269 aa12.61□□□□□ -0.39
USP40-206ENST00000443711 HARBI1Q96MB7 349 aa12.61□□□□□ -0.39
USP40-206ENST00000443711 TP53RKQ96S44 253 aa12.61□□□□□ -0.39
USP40-206ENST00000443711 AIFM2Q9BRQ8 373 aa12.61□□□□□ -0.39
USP40-206ENST00000443711 ALX4Q9H161 411 aaPredicted RBP12.61□□□□□ -0.39
USP40-206ENST00000443711 PLEKHA2Q9HB19 425 aa12.61□□□□□ -0.39
USP40-206ENST00000443711 NCBP2LA6PVI3 153 aaKnown RBP12.6□□□□□ -0.39
USP40-206ENST00000443711 GPR137BO60478 399 aa12.6□□□□□ -0.39
USP40-206ENST00000443711 RAMP3O60896 148 aa12.6□□□□□ -0.39
USP40-206ENST00000443711 PEX14O75381 377 aa12.6□□□□□ -0.39
USP40-206ENST00000443711 HRASP01112 189 aa12.6□□□□□ -0.39
USP40-206ENST00000443711 RNASE1P07998 156 aaKnown RBP12.6□□□□□ -0.39
USP40-206ENST00000443711 ANXA3P12429 323 aa12.6□□□□□ -0.39
USP40-206ENST00000443711 UBA52P62987 128 aaKnown RBP12.6□□□□□ -0.39
USP40-206ENST00000443711 MMDQ15546 238 aa12.6□□□□□ -0.39
USP40-206ENST00000443711 SP6Q3SY56 376 aa12.6□□□□□ -0.39
USP40-206ENST00000443711 NPBQ8NG41 125 aa12.6□□□□□ -0.39
USP40-206ENST00000443711 GALNT14Q96FL9 552 aa12.6□□□□□ -0.39
USP40-206ENST00000443711 PLSCR3Q9NRY6 295 aa12.6□□□□□ -0.39
USP40-206ENST00000443711 COMMD9Q9P000 198 aa12.6□□□□□ -0.39
USP40-206ENST00000443711 KIAA1456Q9P272 454 aa12.6□□□□□ -0.39
USP40-206ENST00000443711 MOB4Q9Y3A3 225 aa12.6□□□□□ -0.39
USP40-206ENST00000443711 TRIM77I1YAP6 450 aa12.59□□□□□ -0.39
USP40-206ENST00000443711 M0QZK8 103 aa12.59□□□□□ -0.39
USP40-206ENST00000443711 NBR2O15453 112 aa12.59□□□□□ -0.39
USP40-206ENST00000443711 FGF16O43320 207 aa12.59□□□□□ -0.39
USP40-206ENST00000443711 SPDEFO95238 335 aa12.59□□□□□ -0.39
USP40-206ENST00000443711 OR5AC1P0C628 307 aa12.59□□□□□ -0.39
USP40-206ENST00000443711 OR4E1P0C645 316 aa12.59□□□□□ -0.39
USP40-206ENST00000443711 VSIG10L2P0DP72 767 aa12.59□□□□□ -0.39
USP40-206ENST00000443711 RPA2P15927 270 aa12.59□□□□□ -0.39
USP40-206ENST00000443711 ANXA7P20073 488 aaKnown RBP12.59□□□□□ -0.39
USP40-206ENST00000443711 VAMP1P23763 118 aa12.59□□□□□ -0.39
USP40-206ENST00000443711 UCP1P25874 307 aa12.59□□□□□ -0.39
USP40-206ENST00000443711 CNTFRP26992 372 aa12.59□□□□□ -0.39
USP40-206ENST00000443711 F2RL1P55085 397 aa12.59□□□□□ -0.39
USP40-206ENST00000443711 SUPT4H1P63272 117 aaKnown RBP12.59□□□□□ -0.39
USP40-206ENST00000443711 PSG5Q15238 335 aa12.59□□□□□ -0.39
USP40-206ENST00000443711 RGS21Q2M5E4 152 aa12.59□□□□□ -0.39
USP40-206ENST00000443711 VMA21Q3ZAQ7 101 aa12.59□□□□□ -0.39
USP40-206ENST00000443711 GLYATL2Q8WU03 294 aa12.59□□□□□ -0.39
USP40-206ENST00000443711 TMEM222Q9H0R3 208 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms