RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 RNF224P0DH78 156 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 TIMP3P35625 211 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 ZNF718Q3SXZ3 478 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 TIPARPQ7Z3E1 657 aaKnown RBP4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 MED12LQ86YW9 2145 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 DMRTC2Q8IXT2 367 aaPredicted RBP4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 TDHQ8IZJ6 230 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 OR1L1Q8NH94 360 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 ZCCHC14Q8WYQ9 949 aaKnown RBP4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 ELOVL1Q9BW60 279 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 ABI3Q9P2A4 366 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 SLC25A10Q9UBX3 287 aaPredicted RBP4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 NAGKQ9UJ70 344 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 HCFC1P51610 2035 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 UNC80Q8N2C7 3258 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 MED12Q93074 2177 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 TRGV10A0A0A0MS01 117 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 C21orf140B9A014 251 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 C12orf77C9JDV5 145 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 HAND1O96004 215 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 HPRT1P00492 218 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 PDGFBP01127 241 aaPredicted RBP4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 CCL4P13236 92 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 VDAC2P45880 294 aaPredicted RBP4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 TDGF1P3P51864 188 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 RPL30P62888 115 aaKnown RBP4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 RPL19P84098 196 aaKnown RBP4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 IZUMO4Q1ZYL8 232 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 CDCP2Q5VXM1 449 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 TOMM20LQ6UXN7 152 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 H2BFWTQ7Z2G1 175 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 CT55Q8WUE5 264 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 IL1F10Q8WWZ1 152 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 TMEM68Q96MH6 324 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 SNHG12Q9BXW3 62 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 TTTY12Q9BZ98 90 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 IL36BQ9NZH7 164 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 KCNS2Q9ULS6 477 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 TRAPPC1Q9Y5R8 145 aa4.79□□□□□ -1.64
CCDC88A-203ENST00000412148 DSCAML1Q8TD84 2053 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 TANC2Q9HCD6 1990 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 HSPB6O14558 160 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 ZG16O60844 167 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 RAMP3O60896 148 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 WDR1O75083 606 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 S1PR2O95136 353 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 MT-CO3P00414 261 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 SP1P08047 785 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 LINC00614P0C842 121 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 KITLGP21583 273 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 CA6P23280 308 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 CD82P27701 267 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 CFHR2P36980 270 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 TPPP2P59282 170 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 TFF3Q07654 80 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 POU2AF1Q16633 256 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 RTL8BQ17RB0 113 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 OR8G2PQ6IF36 304 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 TEX38Q6PEX7 206 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 INO80CQ6PI98 192 aaPredicted RBP4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 UBALD2Q8IYN6 164 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 ZNF436-AS1Q8NC38 126 aaPredicted RBP4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 ZNF488Q96MN9 340 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 C19orf24Q9BVV8 132 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 GNB1LQ9BYB4 327 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 OR2D2Q9H210 308 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 TMEM106BQ9NUM4 274 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 JPT1Q9UK76 154 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 WASF3Q9UPY6 502 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 TET2Q6N021 2002 aaPredicted RBP4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 A0A096LPE4 126 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 MDFIC2A0A1B0GVS7 189 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 A0A1W2PPZ6 126 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 C15orf65H3BRN8 121 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 MT-CO2P00403 227 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 DUTP33316 252 aaKnown RBP4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 G6PCP35575 357 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 TGFBR3Q03167 851 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 MZT1Q08AG7 82 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 TMEM30BQ3MIR4 351 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 OR10J3Q5JRS4 329 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 SPATA46Q5T0L3 261 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 RASL11AQ6T310 242 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 TGIF2LXQ8IUE1 241 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 MRPL41Q8IXM3 137 aaKnown RBP4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 C11orf53Q8IXP5 236 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 C17orf78Q8N4C9 275 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 MDS2Q8NDY4 140 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 CORO2AQ92828 525 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 SDSLQ96GA7 329 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 COQ2Q96H96 371 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 MIEN1Q9BRT3 115 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 GGTLC1Q9BX51 225 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 CLN8Q9UBY8 286 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 KLF13Q9Y2Y9 288 aaPredicted RBP4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 RBM7Q9Y580 266 aaKnown RBP4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 FREM1Q5H8C1 2179 aa4.78□□□□□ -1.64
CCDC88A-203ENST00000412148 RTTNQ86VV8 2226 aa4.78□□□□□ -1.65
CCDC88A-203ENST00000412148 MARCH11A6NNE9 402 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 152.4 ms