RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 BTBD17A6NE02 478 aa16.59■□□□□ 0.25
USP39-204ENST00000409766 FAM90A9PA6NNJ1 464 aa16.59■□□□□ 0.25
USP39-204ENST00000409766 OR9G9P0C7N8 305 aa16.59■□□□□ 0.25
USP39-204ENST00000409766 ZNF436-AS1Q8NC38 126 aaPredicted RBP16.59■□□□□ 0.25
USP39-204ENST00000409766 ZNF439Q8NDP4 499 aa16.59■□□□□ 0.25
USP39-204ENST00000409766 RNASE6Q93091 150 aaKnown RBP16.59■□□□□ 0.25
USP39-204ENST00000409766 CIB3Q96Q77 187 aaPredicted RBP16.59■□□□□ 0.25
USP39-204ENST00000409766 PSMG3Q9BT73 122 aaPredicted RBP16.59■□□□□ 0.25
USP39-204ENST00000409766 IDI2-AS1Q9NZ38 188 aa16.59■□□□□ 0.25
USP39-204ENST00000409766 PRELID3BQ9Y3B1 194 aa16.59■□□□□ 0.25
USP39-204ENST00000409766 A0A1W2PPE3 182 aa16.58■□□□□ 0.25
USP39-204ENST00000409766 E7EQL1 145 aa16.58■□□□□ 0.25
USP39-204ENST00000409766 RBMXL2O75526 392 aaKnown RBP16.58■□□□□ 0.25
USP39-204ENST00000409766 TLE4Q04727 773 aa16.58■□□□□ 0.25
USP39-204ENST00000409766 OR8G2PQ6IF36 304 aa16.58■□□□□ 0.25
USP39-204ENST00000409766 TMEM88Q6PEY1 159 aa16.58■□□□□ 0.25
USP39-204ENST00000409766 KDF1Q8NAX2 398 aaPredicted RBP16.58■□□□□ 0.25
USP39-204ENST00000409766 S1PR3Q99500 378 aa16.58■□□□□ 0.25
USP39-204ENST00000409766 ZNF251Q9BRH9 671 aa16.58■□□□□ 0.25
USP39-204ENST00000409766 WDR61Q9GZS3 305 aaKnown RBP16.58■□□□□ 0.25
USP39-204ENST00000409766 ZZEF1O43149 2961 aa16.58■□□□□ 0.24
USP39-204ENST00000409766 SAA2-SAA4A0A096LPE2 208 aa16.58■□□□□ 0.24
USP39-204ENST00000409766 NKX6-3A6NJ46 265 aa16.58■□□□□ 0.24
USP39-204ENST00000409766 PMS2P5A8MQ11 134 aa16.58■□□□□ 0.24
USP39-204ENST00000409766 TMEM178BH3BS89 294 aa16.58■□□□□ 0.24
USP39-204ENST00000409766 SAA2P0DJI9 122 aaPredicted RBP16.58■□□□□ 0.24
USP39-204ENST00000409766 NFYBP25208 207 aa16.58■□□□□ 0.24
USP39-204ENST00000409766 CA7P43166 264 aa16.58■□□□□ 0.24
USP39-204ENST00000409766 KIR2DS2P43631 304 aa16.58■□□□□ 0.24
USP39-204ENST00000409766 CASP6P55212 293 aa16.58■□□□□ 0.24
USP39-204ENST00000409766 DHRS7BQ6IAN0 325 aaPredicted RBP16.58■□□□□ 0.24
USP39-204ENST00000409766 NEUROG1Q92886 237 aa16.58■□□□□ 0.24
USP39-204ENST00000409766 QTRT1Q9BXR0 403 aaKnown RBP16.58■□□□□ 0.24
USP39-204ENST00000409766 MMP23AO75900 390 aa16.57■□□□□ 0.24
USP39-204ENST00000409766 TMEM30BQ3MIR4 351 aa16.57■□□□□ 0.24
USP39-204ENST00000409766 C1orf87Q8N0U7 546 aa16.57■□□□□ 0.24
USP39-204ENST00000409766 CLRN3Q8NCR9 226 aa16.57■□□□□ 0.24
USP39-204ENST00000409766 SFT2D1Q8WV19 159 aa16.57■□□□□ 0.24
USP39-204ENST00000409766 KIAA1456Q9P272 454 aa16.57■□□□□ 0.24
USP39-204ENST00000409766 YLPM1P49750 1951 aaKnown RBP16.57■□□□□ 0.24
USP39-204ENST00000409766 PKDREJQ9NTG1 2253 aa16.57■□□□□ 0.24
USP39-204ENST00000409766 hADV38S2A0JD32 116 aa16.57■□□□□ 0.24
USP39-204ENST00000409766 NDUFB7P17568 137 aa16.57■□□□□ 0.24
USP39-204ENST00000409766 ATF4P18848 351 aaPredicted RBP16.57■□□□□ 0.24
USP39-204ENST00000409766 SERF2P84101 59 aa16.57■□□□□ 0.24
USP39-204ENST00000409766 KLRB1Q12918 225 aa16.57■□□□□ 0.24
USP39-204ENST00000409766 CBLN2Q8IUK8 224 aa16.57■□□□□ 0.24
USP39-204ENST00000409766 RARRES2Q99969 163 aa16.57■□□□□ 0.24
USP39-204ENST00000409766 SMDT1Q9H4I9 107 aa16.57■□□□□ 0.24
USP39-204ENST00000409766 SLC25A10Q9UBX3 287 aaPredicted RBP16.57■□□□□ 0.24
USP39-204ENST00000409766 RPUSD1Q9UJJ7 312 aaKnown RBP16.57■□□□□ 0.24
USP39-204ENST00000409766 LINC00312Q9Y6C7 94 aa16.57■□□□□ 0.24
USP39-204ENST00000409766 SPTA1P02549 2419 aa16.57■□□□□ 0.24
USP39-204ENST00000409766 PPIAL4EA0A075B759 164 aa16.56■□□□□ 0.24
USP39-204ENST00000409766 CEBPZOSA8MTT3 80 aa16.56■□□□□ 0.24
USP39-204ENST00000409766 PPIAL4DF5H284 164 aa16.56■□□□□ 0.24
USP39-204ENST00000409766 PPIAL4FP0DN26 164 aa16.56■□□□□ 0.24
USP39-204ENST00000409766 NQO2P16083 231 aa16.56■□□□□ 0.24
USP39-204ENST00000409766 OR2B8PP59922 312 aa16.56■□□□□ 0.24
USP39-204ENST00000409766 SPINK9Q5DT21 86 aa16.56■□□□□ 0.24
USP39-204ENST00000409766 SSX9Q7RTT3 188 aa16.56■□□□□ 0.24
USP39-204ENST00000409766 VKORC1L1Q8N0U8 176 aa16.56■□□□□ 0.24
USP39-204ENST00000409766 TAF15Q92804 592 aaKnown RBP eCLIP16.56■□□□□ 0.24
USP39-204ENST00000409766 SLC35B3Q9H1N7 401 aa16.56■□□□□ 0.24
USP39-204ENST00000409766 RPRMQ9NS64 109 aa16.56■□□□□ 0.24
USP39-204ENST00000409766 TMEM106BQ9NUM4 274 aa16.56■□□□□ 0.24
USP39-204ENST00000409766 PPIAL4AQ9Y536 164 aa16.56■□□□□ 0.24
USP39-204ENST00000409766 UBE2L5PA0A1B0GUS4 154 aa16.55■□□□□ 0.24
USP39-204ENST00000409766 RBFOX3A6NFN3 312 aa16.55■□□□□ 0.24
USP39-204ENST00000409766 FCN3O75636 299 aa16.55■□□□□ 0.24
USP39-204ENST00000409766 MRPS11P82912 194 aaKnown RBP16.55■□□□□ 0.24
USP39-204ENST00000409766 ATP6V1FQ16864 119 aa16.55■□□□□ 0.24
USP39-204ENST00000409766 PRAMEF5Q5TYX0 476 aa16.55■□□□□ 0.24
USP39-204ENST00000409766 CCL17Q92583 94 aa16.55■□□□□ 0.24
USP39-204ENST00000409766 TRAV1-1A0A0B4J248 108 aa16.55■□□□□ 0.24
USP39-204ENST00000409766 TNFRSF13BO14836 293 aaPredicted RBP16.55■□□□□ 0.24
USP39-204ENST00000409766 ERVK-16P61578 105 aa16.55■□□□□ 0.24
USP39-204ENST00000409766 MEF2CQ06413 473 aaPredicted RBP16.55■□□□□ 0.24
USP39-204ENST00000409766 FBXL19-AS1Q494R0 122 aa16.55■□□□□ 0.24
USP39-204ENST00000409766 LYG1Q8N1E2 194 aa16.55■□□□□ 0.24
USP39-204ENST00000409766 OR4S2Q8NH73 311 aa16.55■□□□□ 0.24
USP39-204ENST00000409766 VSIRQ9H7M9 311 aa16.55■□□□□ 0.24
USP39-204ENST00000409766 ARFGEF3Q5TH69 2177 aa16.54■□□□□ 0.24
USP39-204ENST00000409766 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP16.54■□□□□ 0.24
USP39-204ENST00000409766 HBE1P02100 147 aa16.54■□□□□ 0.24
USP39-204ENST00000409766 THBS3P49746 956 aa16.54■□□□□ 0.24
USP39-204ENST00000409766 SLC25A48Q6ZT89 311 aaKnown RBP16.54■□□□□ 0.24
USP39-204ENST00000409766 ST6GALNAC3Q8NDV1 305 aa16.54■□□□□ 0.24
USP39-204ENST00000409766 OR10P1Q8NGE3 313 aa16.54■□□□□ 0.24
USP39-204ENST00000409766 OR4A16Q8NH70 328 aa16.54■□□□□ 0.24
USP39-204ENST00000409766 PINX1Q96BK5 328 aaKnown RBP16.54■□□□□ 0.24
USP39-204ENST00000409766 MS4A5Q9H3V2 200 aa16.54■□□□□ 0.24
USP39-204ENST00000409766 DYNLRB1Q9NP97 96 aa16.54■□□□□ 0.24
USP39-204ENST00000409766 IFNA17P01571 189 aa16.53■□□□□ 0.24
USP39-204ENST00000409766 CD3EP07766 207 aa16.53■□□□□ 0.24
USP39-204ENST00000409766 C1QTNF9P0C862 333 aa16.53■□□□□ 0.24
USP39-204ENST00000409766 APOBEC3AP31941 199 aaPredicted RBP16.53■□□□□ 0.24
USP39-204ENST00000409766 GNG10P50151 68 aa16.53■□□□□ 0.24
USP39-204ENST00000409766 RPL31P62899 125 aaKnown RBP16.53■□□□□ 0.24
USP39-204ENST00000409766 RELBQ01201 579 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms