RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 PRDX1Q06830 199 aaKnown RBP4.6□□□□□ -1.67
CLK1-202ENST00000409403 TMEM187Q14656 261 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 SHBQ15464 509 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 LYSMD4Q5XG99 296 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 ASPHD2Q6ICH7 369 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 FAM71F2Q6NXP2 309 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 COX15Q7KZN9 410 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 BHLHA15Q7RTS1 189 aaPredicted RBP4.6□□□□□ -1.67
CLK1-202ENST00000409403 Q8NFD4 153 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 OR52R1Q8NGF1 315 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 OR2AJ1Q8NGZ0 328 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 OR52N5Q8NH56 324 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 OR4S2Q8NH73 311 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 ZPLD1Q8TCW7 415 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 SCGB1C1Q8TD33 95 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 VN1R17PQ8TDU5 208 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 ABHD3Q8WU67 409 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 RLN3Q8WXF3 142 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 DYRK2Q92630 601 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 C18orf12Q96KH6 178 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 HSPB9Q9BQS6 159 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 PATZ1Q9HBE1 687 aaKnown RBP4.6□□□□□ -1.67
CLK1-202ENST00000409403 PNO1Q9NRX1 252 aaKnown RBP4.6□□□□□ -1.67
CLK1-202ENST00000409403 CLN8Q9UBY8 286 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 SLC22A13Q9Y226 551 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 MRPS28Q9Y2Q9 187 aaKnown RBP4.6□□□□□ -1.67
CLK1-202ENST00000409403 RHBDD3Q9Y3P4 386 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 LSM4Q9Y4Z0 139 aaKnown RBP4.6□□□□□ -1.67
CLK1-202ENST00000409403 OR1A2Q9Y585 309 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 INSL5Q9Y5Q6 135 aa4.6□□□□□ -1.67
CLK1-202ENST00000409403 ZNF320A2RRD8 509 aa4.59□□□□□ -1.67
CLK1-202ENST00000409403 C17orf112F2Z3M2 114 aa4.59□□□□□ -1.67
CLK1-202ENST00000409403 CORTO00230 105 aa4.59□□□□□ -1.67
CLK1-202ENST00000409403 HS3ST1O14792 307 aa4.59□□□□□ -1.67
CLK1-202ENST00000409403 XRCC2O43543 280 aa4.59□□□□□ -1.67
CLK1-202ENST00000409403 NKX2-2O95096 273 aa4.59□□□□□ -1.67
CLK1-202ENST00000409403 ZNF728P0DKX0 622 aa4.59□□□□□ -1.67
CLK1-202ENST00000409403 CPMP14384 443 aa4.59□□□□□ -1.67
CLK1-202ENST00000409403 CRISP2P16562 243 aa4.59□□□□□ -1.67
CLK1-202ENST00000409403 MDKP21741 143 aaPredicted RBP4.59□□□□□ -1.67
CLK1-202ENST00000409403 CD38P28907 300 aa4.59□□□□□ -1.67
CLK1-202ENST00000409403 ZNF93P35789 620 aaPredicted RBP4.59□□□□□ -1.67
CLK1-202ENST00000409403 RPL23P62829 140 aaKnown RBP4.59□□□□□ -1.67
CLK1-202ENST00000409403 MEF2BQ02080 365 aaPredicted RBP4.59□□□□□ -1.67
CLK1-202ENST00000409403 RBPJQ06330 500 aa4.59□□□□□ -1.67
CLK1-202ENST00000409403 FMODQ06828 376 aa4.59□□□□□ -1.67
CLK1-202ENST00000409403 FAM27E3Q08E93 113 aa4.59□□□□□ -1.67
CLK1-202ENST00000409403 Q0VG73 95 aa4.59□□□□□ -1.67
CLK1-202ENST00000409403 NFATC4Q14934 902 aa4.59□□□□□ -1.67
CLK1-202ENST00000409403 CD226Q15762 336 aa4.59□□□□□ -1.67
CLK1-202ENST00000409403 ZNF141Q15928 474 aa4.59□□□□□ -1.67
CLK1-202ENST00000409403 EXT1Q16394 746 aa4.59□□□□□ -1.67
CLK1-202ENST00000409403 SRSF7Q16629 238 aaKnown RBP eCLIP4.59□□□□□ -1.67
CLK1-202ENST00000409403 SLC22A6Q4U2R8 563 aa4.59□□□□□ -1.67
CLK1-202ENST00000409403 FAM78AQ5JUQ0 283 aa4.59□□□□□ -1.67
CLK1-202ENST00000409403 SPIN3Q5JUX0 258 aa4.59□□□□□ -1.67
CLK1-202ENST00000409403 RAET1LQ5VY80 246 aa4.59□□□□□ -1.67
CLK1-202ENST00000409403 MORN5Q5VZ52 161 aa4.59□□□□□ -1.67
CLK1-202ENST00000409403 C19orf35Q6ZS72 473 aa4.59□□□□□ -1.67
CLK1-202ENST00000409403 LRRC75AQ8NAA5 344 aa4.59□□□□□ -1.67
CLK1-202ENST00000409403 NECAP1Q8NC96 275 aa4.59□□□□□ -1.67
CLK1-202ENST00000409403 OR5AR1Q8NGP9 310 aa4.59□□□□□ -1.67
CLK1-202ENST00000409403 MPLKIPQ8TAP9 179 aa4.59□□□□□ -1.67
CLK1-202ENST00000409403 ZNF596Q8TC21 504 aa4.59□□□□□ -1.67
CLK1-202ENST00000409403 PSMF1Q92530 271 aa4.59□□□□□ -1.67
CLK1-202ENST00000409403 ADIPOR1Q96A54 375 aa4.59□□□□□ -1.67
CLK1-202ENST00000409403 TMEM56Q96MV1 263 aa4.59□□□□□ -1.67
CLK1-202ENST00000409403 NPFFR1Q9GZQ6 430 aa4.59□□□□□ -1.67
CLK1-202ENST00000409403 CALHM2Q9HA72 323 aa4.59□□□□□ -1.67
CLK1-202ENST00000409403 NECAP2Q9NVZ3 263 aa4.59□□□□□ -1.67
CLK1-202ENST00000409403 LRP12Q9Y561 859 aa4.59□□□□□ -1.67
CLK1-202ENST00000409403 TMEM56-RWDD3S4R434 201 aa4.59□□□□□ -1.67
CLK1-202ENST00000409403 SAA2-SAA4A0A096LPE2 208 aa4.58□□□□□ -1.68
CLK1-202ENST00000409403 IGSF23A1L1A6 192 aa4.58□□□□□ -1.68
CLK1-202ENST00000409403 NPIPB7O75200 414 aa4.58□□□□□ -1.68
CLK1-202ENST00000409403 ZNF253O75346 499 aa4.58□□□□□ -1.68
CLK1-202ENST00000409403 TRAPPC6AO75865 159 aa4.58□□□□□ -1.68
CLK1-202ENST00000409403 CSTAP01040 98 aa4.58□□□□□ -1.68
CLK1-202ENST00000409403 GYPAP02724 150 aa4.58□□□□□ -1.68
CLK1-202ENST00000409403 MT-ND6P03923 174 aa4.58□□□□□ -1.68
CLK1-202ENST00000409403 SERPINA7P05543 415 aa4.58□□□□□ -1.68
CLK1-202ENST00000409403 ASAH2BP0C7U1 165 aa4.58□□□□□ -1.68
CLK1-202ENST00000409403 SMIM17P0DL12 118 aa4.58□□□□□ -1.68
CLK1-202ENST00000409403 GZMHP20718 246 aa4.58□□□□□ -1.68
CLK1-202ENST00000409403 IL3RAP26951 378 aa4.58□□□□□ -1.68
CLK1-202ENST00000409403 CMPK1P30085 196 aa4.58□□□□□ -1.68
CLK1-202ENST00000409403 TSPOP30536 169 aa4.58□□□□□ -1.68
CLK1-202ENST00000409403 BIDP55957 195 aa4.58□□□□□ -1.68
CLK1-202ENST00000409403 PIGPP57054 158 aa4.58□□□□□ -1.68
CLK1-202ENST00000409403 MRPS34P82930 218 aaKnown RBP4.58□□□□□ -1.68
CLK1-202ENST00000409403 HIST3H3Q16695 136 aa4.58□□□□□ -1.68
CLK1-202ENST00000409403 CXorf66Q5JRM2 361 aaPredicted RBP4.58□□□□□ -1.68
CLK1-202ENST00000409403 FHL5Q5TD97 284 aa4.58□□□□□ -1.68
CLK1-202ENST00000409403 PRAMEF20Q5VT98 475 aa4.58□□□□□ -1.68
CLK1-202ENST00000409403 SAMD13Q5VXD3 122 aa4.58□□□□□ -1.68
CLK1-202ENST00000409403 WBP2NLQ6ICG8 309 aa4.58□□□□□ -1.68
CLK1-202ENST00000409403 OR4A47Q6IF82 309 aa4.58□□□□□ -1.68
CLK1-202ENST00000409403 GLIPR1L1Q6UWM5 242 aa4.58□□□□□ -1.68
CLK1-202ENST00000409403 GTF2H5Q6ZYL4 71 aa4.58□□□□□ -1.68
CLK1-202ENST00000409403 TMEM144Q7Z5S9 345 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms