RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 FKBP11Q9NYL4 201 aa17.53■□□□□ 0.4
CTCF-202ENST00000401394 J3QT63 122 aa17.53■□□□□ 0.4
CTCF-202ENST00000401394 NTN3O00634 580 aaPredicted RBP17.53■□□□□ 0.4
CTCF-202ENST00000401394 ADMP35318 185 aa17.53■□□□□ 0.4
CTCF-202ENST00000401394 HLA-DRB5Q30154 266 aa17.53■□□□□ 0.4
CTCF-202ENST00000401394 COA6Q5JTJ3 125 aaKnown RBP17.53■□□□□ 0.4
CTCF-202ENST00000401394 TMEM251Q8N6I4 163 aa17.53■□□□□ 0.4
CTCF-202ENST00000401394 TMEM18Q96B42 140 aa17.53■□□□□ 0.4
CTCF-202ENST00000401394 TNCP24821 2201 aa17.53■□□□□ 0.4
CTCF-202ENST00000401394 IGKV3D-15A0A087WSY6 115 aa17.52■□□□□ 0.4
CTCF-202ENST00000401394 GGCTO75223 188 aaKnown RBP17.52■□□□□ 0.4
CTCF-202ENST00000401394 HBZP02008 142 aa17.52■□□□□ 0.4
CTCF-202ENST00000401394 GABRA2P47869 451 aa17.52■□□□□ 0.4
CTCF-202ENST00000401394 CDC34P49427 236 aaPredicted RBP17.52■□□□□ 0.4
CTCF-202ENST00000401394 SSMEM1Q8WWF3 244 aa17.52■□□□□ 0.4
CTCF-202ENST00000401394 MANBALQ9NQG1 85 aa17.52■□□□□ 0.4
CTCF-202ENST00000401394 TP53TG5Q9Y2B4 290 aa17.52■□□□□ 0.4
CTCF-202ENST00000401394 TMEM250H0YL14 139 aa17.52■□□□□ 0.4
CTCF-202ENST00000401394 AQP7O14520 342 aa17.52■□□□□ 0.4
CTCF-202ENST00000401394 OR9G9P0C7N8 305 aa17.52■□□□□ 0.4
CTCF-202ENST00000401394 RPL15P61313 204 aaKnown RBP17.52■□□□□ 0.4
CTCF-202ENST00000401394 PRR31Q5SQ13 230 aa17.52■□□□□ 0.4
CTCF-202ENST00000401394 PRAMEF6Q5VXH4 476 aa17.52■□□□□ 0.4
CTCF-202ENST00000401394 PSG11Q9UQ72 335 aa17.52■□□□□ 0.4
CTCF-202ENST00000401394 DMXL1Q9Y485 3027 aa17.52■□□□□ 0.39
CTCF-202ENST00000401394 TRAV3A0A0B4J244 114 aa17.52■□□□□ 0.39
CTCF-202ENST00000401394 SCO2A0A1W2PP80 73 aa17.52■□□□□ 0.39
CTCF-202ENST00000401394 SYNGR4O95473 234 aa17.52■□□□□ 0.39
CTCF-202ENST00000401394 COX5AP20674 150 aa17.52■□□□□ 0.39
CTCF-202ENST00000401394 CDKN1AP38936 164 aa17.52■□□□□ 0.39
CTCF-202ENST00000401394 IL17BQ9UHF5 180 aa17.52■□□□□ 0.39
CTCF-202ENST00000401394 TP53TG3Q9ULZ0 132 aa17.52■□□□□ 0.39
CTCF-202ENST00000401394 RNF114Q9Y508 228 aa17.52■□□□□ 0.39
CTCF-202ENST00000401394 CACNA1GO43497 2377 aa17.52■□□□□ 0.39
CTCF-202ENST00000401394 MPV17P39210 176 aa17.51■□□□□ 0.39
CTCF-202ENST00000401394 PDLIM4P50479 330 aa17.51■□□□□ 0.39
CTCF-202ENST00000401394 SPCS3P61009 180 aa17.51■□□□□ 0.39
CTCF-202ENST00000401394 SPATA31B1PQ5VZV4 182 aa17.51■□□□□ 0.39
CTCF-202ENST00000401394 TGIF2LYQ8IUE0 185 aa17.51■□□□□ 0.39
CTCF-202ENST00000401394 ZNF709Q8N972 641 aa17.51■□□□□ 0.39
CTCF-202ENST00000401394 TGOLN2O43493 480 aa17.51■□□□□ 0.39
CTCF-202ENST00000401394 LYZL6O75951 148 aa17.51■□□□□ 0.39
CTCF-202ENST00000401394 HAND1O96004 215 aa17.51■□□□□ 0.39
CTCF-202ENST00000401394 WNT2P09544 360 aa17.51■□□□□ 0.39
CTCF-202ENST00000401394 FOSL1P15407 271 aa17.51■□□□□ 0.39
CTCF-202ENST00000401394 SLC35B1P78383 322 aa17.51■□□□□ 0.39
CTCF-202ENST00000401394 MIC13Q5XKP0 118 aa17.51■□□□□ 0.39
CTCF-202ENST00000401394 PMS2CLQ68D20 193 aa17.51■□□□□ 0.39
CTCF-202ENST00000401394 ZNF705AQ6ZN79 300 aaPredicted RBP17.51■□□□□ 0.39
CTCF-202ENST00000401394 TBX15Q96SF7 602 aa17.51■□□□□ 0.39
CTCF-202ENST00000401394 PPIAL4AQ9Y536 164 aa17.51■□□□□ 0.39
CTCF-202ENST00000401394 OR5B21A6NL26 309 aa17.5■□□□□ 0.39
CTCF-202ENST00000401394 PLGLB1Q02325 96 aa17.5■□□□□ 0.39
CTCF-202ENST00000401394 BATFQ16520 125 aa17.5■□□□□ 0.39
CTCF-202ENST00000401394 ALKBH2Q6NS38 261 aa17.5■□□□□ 0.39
CTCF-202ENST00000401394 ABHD12Q8N2K0 398 aa17.5■□□□□ 0.39
CTCF-202ENST00000401394 MPC1Q9Y5U8 109 aa17.5■□□□□ 0.39
CTCF-202ENST00000401394 C15orf62A8K5M9 175 aa17.5■□□□□ 0.39
CTCF-202ENST00000401394 GCGP01275 180 aa17.5■□□□□ 0.39
CTCF-202ENST00000401394 EDDM3AQ14507 147 aa17.5■□□□□ 0.39
CTCF-202ENST00000401394 OR1C1Q15619 314 aa17.5■□□□□ 0.39
CTCF-202ENST00000401394 H2BFWTQ7Z2G1 175 aa17.5■□□□□ 0.39
CTCF-202ENST00000401394 FAM122AQ96E09 287 aa17.5■□□□□ 0.39
CTCF-202ENST00000401394 COQ2Q96H96 371 aa17.5■□□□□ 0.39
CTCF-202ENST00000401394 NOL4LQ96MY1 436 aaPredicted RBP17.5■□□□□ 0.39
CTCF-202ENST00000401394 STRADBQ9C0K7 418 aa17.5■□□□□ 0.39
CTCF-202ENST00000401394 CTNNBIP1Q9NSA3 81 aaPredicted RBP17.5■□□□□ 0.39
CTCF-202ENST00000401394 CEP250Q9BV73 2442 aa17.5■□□□□ 0.39
CTCF-202ENST00000401394 HCFC1P51610 2035 aa17.5■□□□□ 0.39
CTCF-202ENST00000401394 CSMD1Q96PZ7 3565 aa17.5■□□□□ 0.39
CTCF-202ENST00000401394 AGFG2O95081 481 aa17.49■□□□□ 0.39
CTCF-202ENST00000401394 ARL14EPLP0DKL9 152 aa17.49■□□□□ 0.39
CTCF-202ENST00000401394 MYOD1P15172 320 aa17.49■□□□□ 0.39
CTCF-202ENST00000401394 LINC00310P59036 64 aa17.49■□□□□ 0.39
CTCF-202ENST00000401394 ATP1A1-AS1Q5TC04 95 aa17.49■□□□□ 0.39
CTCF-202ENST00000401394 ZNF645Q8N7E2 425 aa17.49■□□□□ 0.39
CTCF-202ENST00000401394 OR13A1Q8NGR1 328 aa17.49■□□□□ 0.39
CTCF-202ENST00000401394 SLC25A40Q8TBP6 338 aa17.49■□□□□ 0.39
CTCF-202ENST00000401394 MS4A10Q96PG2 267 aa17.49■□□□□ 0.39
CTCF-202ENST00000401394 IER2Q9BTL4 223 aa17.49■□□□□ 0.39
CTCF-202ENST00000401394 MBNL3Q9NUK0 354 aaKnown RBP17.49■□□□□ 0.39
CTCF-202ENST00000401394 BOKQ9UMX3 212 aaPredicted RBP17.49■□□□□ 0.39
CTCF-202ENST00000401394 P0C879 139 aa17.49■□□□□ 0.39
CTCF-202ENST00000401394 ZNF25P17030 456 aaPredicted RBP17.49■□□□□ 0.39
CTCF-202ENST00000401394 ERVK11-1P61568 191 aa17.49■□□□□ 0.39
CTCF-202ENST00000401394 GALMQ96C23 342 aa17.49■□□□□ 0.39
CTCF-202ENST00000401394 ATMQ13315 3056 aa17.49■□□□□ 0.39
CTCF-202ENST00000401394 PROP1O75360 226 aa17.49■□□□□ 0.39
CTCF-202ENST00000401394 FOXH1O75593 365 aa17.49■□□□□ 0.39
CTCF-202ENST00000401394 CLDN14O95500 239 aa17.49■□□□□ 0.39
CTCF-202ENST00000401394 LEAP2Q969E1 77 aa17.49■□□□□ 0.39
CTCF-202ENST00000401394 ACY3Q96HD9 319 aa17.49■□□□□ 0.39
CTCF-202ENST00000401394 LINC00470Q9BZP3 86 aa17.49■□□□□ 0.39
CTCF-202ENST00000401394 ARR3P36575 388 aa17.48■□□□□ 0.39
CTCF-202ENST00000401394 PSG7Q13046 419 aa17.48■□□□□ 0.39
CTCF-202ENST00000401394 OR5I1Q13606 314 aa17.48■□□□□ 0.39
CTCF-202ENST00000401394 DNLZQ5SXM8 178 aa17.48■□□□□ 0.39
CTCF-202ENST00000401394 Q6ZWC4 215 aa17.48■□□□□ 0.39
CTCF-202ENST00000401394 OCC1Q8TAD7 63 aa17.48■□□□□ 0.39
CTCF-202ENST00000401394 OBP2BQ9NPH6 170 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms