RNA–Protein interactions for RNA: ENST00000399804.5

SCAF4-202, Transcript of SR-related CTD associated factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF4, Length 4,127 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-202ENST00000399804 NEIL1Q96FI4 390 aaPredicted RBP11.79□□□□□ -0.52
SCAF4-202ENST00000399804 CDH23Q9H251 3354 aa11.79□□□□□ -0.52
SCAF4-202ENST00000399804 C17orf98A8MV24 154 aa11.79□□□□□ -0.52
SCAF4-202ENST00000399804 FAM157AC9JC47 383 aa11.79□□□□□ -0.52
SCAF4-202ENST00000399804 K7ENP7 123 aa11.79□□□□□ -0.52
SCAF4-202ENST00000399804 NDUFA2O43678 99 aa11.79□□□□□ -0.52
SCAF4-202ENST00000399804 NPY1RP25929 384 aa11.79□□□□□ -0.52
SCAF4-202ENST00000399804 TAS2R45P59539 299 aa11.79□□□□□ -0.52
SCAF4-202ENST00000399804 TNFRSF9Q07011 255 aa11.79□□□□□ -0.52
SCAF4-202ENST00000399804 TNXAQ16473 311 aa11.79□□□□□ -0.52
SCAF4-202ENST00000399804 MBNL2Q5VZF2 373 aaKnown RBP11.79□□□□□ -0.52
SCAF4-202ENST00000399804 MISP3Q96FF7 219 aa11.79□□□□□ -0.52
SCAF4-202ENST00000399804 HES4Q9HCC6 221 aa11.79□□□□□ -0.52
SCAF4-202ENST00000399804 RBFOX3A6NFN3 312 aa11.78□□□□□ -0.52
SCAF4-202ENST00000399804 ZNF729A6NN14 1252 aaPredicted RBP11.78□□□□□ -0.52
SCAF4-202ENST00000399804 SELLP14151 372 aa11.78□□□□□ -0.52
SCAF4-202ENST00000399804 DNM1P46Q6ZS02 220 aa11.78□□□□□ -0.52
SCAF4-202ENST00000399804 ZG16O60844 167 aa11.78□□□□□ -0.52
SCAF4-202ENST00000399804 IGHV1-46P01743 117 aa11.78□□□□□ -0.52
SCAF4-202ENST00000399804 CT45A6P0DMU7 189 aa11.78□□□□□ -0.52
SCAF4-202ENST00000399804 CT45A5P0DMU8 189 aa11.78□□□□□ -0.52
SCAF4-202ENST00000399804 CT45A7P0DMV0 189 aa11.78□□□□□ -0.52
SCAF4-202ENST00000399804 CEACAM3P40198 252 aa11.78□□□□□ -0.52
SCAF4-202ENST00000399804 CT45A1Q5HYN5 189 aa11.78□□□□□ -0.52
SCAF4-202ENST00000399804 CT45A3Q8NHU0 189 aa11.78□□□□□ -0.52
SCAF4-202ENST00000399804 A8MXK9 166 aa11.78□□□□□ -0.52
SCAF4-202ENST00000399804 SRRM5B3KS81 715 aa11.78□□□□□ -0.52
SCAF4-202ENST00000399804 APELAP0DMC3 54 aa11.78□□□□□ -0.52
SCAF4-202ENST00000399804 CDC34P49427 236 aaPredicted RBP11.78□□□□□ -0.52
SCAF4-202ENST00000399804 LPAR2Q9HBW0 351 aa11.78□□□□□ -0.52
SCAF4-202ENST00000399804 AMMECR1Q9Y4X0 333 aaPredicted RBP11.78□□□□□ -0.52
SCAF4-202ENST00000399804 WISP2O76076 250 aa11.77□□□□□ -0.52
SCAF4-202ENST00000399804 ZNF324BQ6AW86 544 aaPredicted RBP11.77□□□□□ -0.52
SCAF4-202ENST00000399804 ZNF429Q86V71 674 aa11.77□□□□□ -0.52
SCAF4-202ENST00000399804 OR4C12Q96R67 309 aa11.77□□□□□ -0.52
SCAF4-202ENST00000399804 SH3BGRL3Q9H299 93 aa11.77□□□□□ -0.52
SCAF4-202ENST00000399804 METRNQ9UJH8 293 aa11.77□□□□□ -0.52
SCAF4-202ENST00000399804 TMEM56-RWDD3S4R434 201 aa11.77□□□□□ -0.52
SCAF4-202ENST00000399804 H7BYZ3 331 aa11.77□□□□□ -0.53
SCAF4-202ENST00000399804 FHITP49789 147 aa11.77□□□□□ -0.53
SCAF4-202ENST00000399804 TMEM140Q9NV12 185 aa11.77□□□□□ -0.53
SCAF4-202ENST00000399804 MDFIC2A0A1B0GVS7 189 aa11.77□□□□□ -0.53
SCAF4-202ENST00000399804 C20orf204Q6ZNR8 217 aa11.77□□□□□ -0.53
SCAF4-202ENST00000399804 FAM90A1Q86YD7 464 aa11.77□□□□□ -0.53
SCAF4-202ENST00000399804 OR13D1Q8NGV5 346 aa11.77□□□□□ -0.53
SCAF4-202ENST00000399804 WFIKKN1Q96NZ8 548 aa11.77□□□□□ -0.53
SCAF4-202ENST00000399804 TUBD1Q9UJT1 453 aa11.77□□□□□ -0.53
SCAF4-202ENST00000399804 SPTBN4Q9H254 2564 aa11.77□□□□□ -0.53
SCAF4-202ENST00000399804 MALRD1Q5VYJ5 2156 aa11.76□□□□□ -0.53
SCAF4-202ENST00000399804 IGSF23A1L1A6 192 aa11.76□□□□□ -0.53
SCAF4-202ENST00000399804 ZNF737O75373 536 aa11.76□□□□□ -0.53
SCAF4-202ENST00000399804 SPCS3P61009 180 aa11.76□□□□□ -0.53
SCAF4-202ENST00000399804 GUCA2BQ16661 112 aa11.76□□□□□ -0.53
SCAF4-202ENST00000399804 S100A7AQ86SG5 101 aa11.76□□□□□ -0.53
SCAF4-202ENST00000399804 OR10A7Q8NGE5 316 aa11.76□□□□□ -0.53
SCAF4-202ENST00000399804 RNASE6Q93091 150 aaKnown RBP11.76□□□□□ -0.53
SCAF4-202ENST00000399804 OR51B2Q9Y5P1 312 aa11.76□□□□□ -0.53
SCAF4-202ENST00000399804 PRRC2CQ9Y520 2896 aaKnown RBP11.76□□□□□ -0.53
SCAF4-202ENST00000399804 F6UZH7 168 aa11.76□□□□□ -0.53
SCAF4-202ENST00000399804 COX7A2P2O60397 106 aa11.76□□□□□ -0.53
SCAF4-202ENST00000399804 CLEC12BQ2HXU8 276 aa11.76□□□□□ -0.53
SCAF4-202ENST00000399804 Q6P435 159 aa11.76□□□□□ -0.53
SCAF4-202ENST00000399804 OR1L8Q8NGR8 309 aa11.76□□□□□ -0.53
SCAF4-202ENST00000399804 USP34Q70CQ2 3546 aa11.76□□□□□ -0.53
SCAF4-202ENST00000399804 KBTBD11-OT1A0A1B0GTJ5 212 aa11.76□□□□□ -0.53
SCAF4-202ENST00000399804 IGFL2Q6UWQ7 119 aa11.76□□□□□ -0.53
SCAF4-202ENST00000399804 FAM90A26D6RGX4 464 aa11.75□□□□□ -0.53
SCAF4-202ENST00000399804 MGST1P10620 155 aaKnown RBP11.75□□□□□ -0.53
SCAF4-202ENST00000399804 HNF1AP20823 631 aa11.75□□□□□ -0.53
SCAF4-202ENST00000399804 HTD2P86397 168 aa11.75□□□□□ -0.53
SCAF4-202ENST00000399804 FLI1Q01543 452 aaPredicted RBP11.75□□□□□ -0.53
SCAF4-202ENST00000399804 TVP23CQ96ET8 276 aa11.75□□□□□ -0.53
SCAF4-202ENST00000399804 C18orf12Q96KH6 178 aa11.75□□□□□ -0.53
SCAF4-202ENST00000399804 PATZ1Q9HBE1 687 aaKnown RBP11.75□□□□□ -0.53
SCAF4-202ENST00000399804 FAM215AQ9Y5M1 114 aa11.75□□□□□ -0.53
SCAF4-202ENST00000399804 EIF3GO75821 320 aaKnown RBP eCLIP11.75□□□□□ -0.53
SCAF4-202ENST00000399804 ARF6P62330 175 aa11.75□□□□□ -0.53
SCAF4-202ENST00000399804 NHLH1Q02575 133 aa11.75□□□□□ -0.53
SCAF4-202ENST00000399804 KCNIP4Q6PIL6 250 aa11.75□□□□□ -0.53
SCAF4-202ENST00000399804 ABHD12Q8N2K0 398 aa11.75□□□□□ -0.53
SCAF4-202ENST00000399804 TMEM171Q8WVE6 324 aa11.75□□□□□ -0.53
SCAF4-202ENST00000399804 VCANP13611 3396 aa11.75□□□□□ -0.53
SCAF4-202ENST00000399804 A0A1W2PN81 502 aa11.75□□□□□ -0.53
SCAF4-202ENST00000399804 CHRNA7P36544 502 aa11.75□□□□□ -0.53
SCAF4-202ENST00000399804 LINC00518Q8N0U6 118 aa11.75□□□□□ -0.53
SCAF4-202ENST00000399804 PCGF1Q9BSM1 259 aa11.75□□□□□ -0.53
SCAF4-202ENST00000399804 DOK5Q9P104 306 aa11.75□□□□□ -0.53
SCAF4-202ENST00000399804 ANKRD11Q6UB99 2663 aaPredicted RBP11.75□□□□□ -0.53
SCAF4-202ENST00000399804 ZNF98A6NK75 572 aa11.75□□□□□ -0.53
SCAF4-202ENST00000399804 LYNX1G3V0Z9 82 aa11.75□□□□□ -0.53
SCAF4-202ENST00000399804 LYNX1P0DP58 116 aa11.75□□□□□ -0.53
SCAF4-202ENST00000399804 CD1BP29016 333 aa11.75□□□□□ -0.53
SCAF4-202ENST00000399804 HOXA4Q00056 320 aaPredicted RBP11.75□□□□□ -0.53
SCAF4-202ENST00000399804 NECAP1Q8NC96 275 aa11.75□□□□□ -0.53
SCAF4-202ENST00000399804 PPIAL4CA0A0B4J2A2 164 aa11.74□□□□□ -0.53
SCAF4-202ENST00000399804 FABP1P07148 127 aa11.74□□□□□ -0.53
SCAF4-202ENST00000399804 PPIAL4GP0DN37 164 aa11.74□□□□□ -0.53
SCAF4-202ENST00000399804 CCL3L1P16619 93 aa11.74□□□□□ -0.53
SCAF4-202ENST00000399804 EGR1P18146 543 aa11.74□□□□□ -0.53
SCAF4-202ENST00000399804 LYPD6Q86Y78 171 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms