RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 COA4Q9NYJ1 87 aa12.42□□□□□ -0.42
GPC3-202ENST00000394299 RAB29O14966 203 aa12.42□□□□□ -0.42
GPC3-202ENST00000394299 TAS2R30P59541 319 aa12.42□□□□□ -0.42
GPC3-202ENST00000394299 MSMO1Q15800 293 aa12.42□□□□□ -0.42
GPC3-202ENST00000394299 SPSB3Q6PJ21 355 aa12.42□□□□□ -0.42
GPC3-202ENST00000394299 LYG1Q8N1E2 194 aa12.42□□□□□ -0.42
GPC3-202ENST00000394299 STRAPQ9Y3F4 350 aaKnown RBP12.42□□□□□ -0.42
GPC3-202ENST00000394299 SAA2-SAA4A0A096LPE2 208 aa12.41□□□□□ -0.42
GPC3-202ENST00000394299 TMEM178BH3BS89 294 aa12.41□□□□□ -0.42
GPC3-202ENST00000394299 IFNA5P01569 189 aa12.41□□□□□ -0.42
GPC3-202ENST00000394299 SAA2P0DJI9 122 aaPredicted RBP12.41□□□□□ -0.42
GPC3-202ENST00000394299 CCL3L1P16619 93 aa12.41□□□□□ -0.42
GPC3-202ENST00000394299 CA7P43166 264 aa12.41□□□□□ -0.42
GPC3-202ENST00000394299 RAB5CP51148 216 aa12.41□□□□□ -0.42
GPC3-202ENST00000394299 ARFGEF3Q5TH69 2177 aa12.41□□□□□ -0.42
GPC3-202ENST00000394299 ETV3LQ6ZN32 361 aa12.41□□□□□ -0.42
GPC3-202ENST00000394299 SVBPQ8N300 66 aa12.41□□□□□ -0.42
GPC3-202ENST00000394299 LILRB2Q8N423 598 aa12.41□□□□□ -0.42
GPC3-202ENST00000394299 SEC11CQ9BY50 192 aa12.41□□□□□ -0.42
GPC3-202ENST00000394299 CARHSP1Q9Y2V2 147 aaKnown RBP12.41□□□□□ -0.42
GPC3-202ENST00000394299 TACC2O95359 2948 aa12.41□□□□□ -0.42
GPC3-202ENST00000394299 HCFC1P51610 2035 aa12.41□□□□□ -0.42
GPC3-202ENST00000394299 LYNX1G3V0Z9 82 aa12.41□□□□□ -0.42
GPC3-202ENST00000394299 SIAH2O43255 324 aa12.41□□□□□ -0.42
GPC3-202ENST00000394299 LYNX1P0DP58 116 aa12.41□□□□□ -0.42
GPC3-202ENST00000394299 UCNP55089 124 aa12.41□□□□□ -0.42
GPC3-202ENST00000394299 AKIRIN2Q53H80 203 aa12.41□□□□□ -0.42
GPC3-202ENST00000394299 CBLN2Q8IUK8 224 aa12.41□□□□□ -0.42
GPC3-202ENST00000394299 DTD1Q8TEA8 209 aa12.41□□□□□ -0.42
GPC3-202ENST00000394299 ZNF251Q9BRH9 671 aa12.41□□□□□ -0.42
GPC3-202ENST00000394299 DFFBO76075 338 aa12.4□□□□□ -0.42
GPC3-202ENST00000394299 KLRB1Q12918 225 aa12.4□□□□□ -0.42
GPC3-202ENST00000394299 TMEM14EPQ6UXP3 125 aa12.4□□□□□ -0.42
GPC3-202ENST00000394299 GNPNAT1Q96EK6 184 aaPredicted RBP12.4□□□□□ -0.42
GPC3-202ENST00000394299 DYNLRB1Q9NP97 96 aa12.4□□□□□ -0.42
GPC3-202ENST00000394299 IDI2-AS1Q9NZ38 188 aa12.4□□□□□ -0.42
GPC3-202ENST00000394299 SLC25A10Q9UBX3 287 aaPredicted RBP12.4□□□□□ -0.42
GPC3-202ENST00000394299 PPIAL4EA0A075B759 164 aa12.4□□□□□ -0.43
GPC3-202ENST00000394299 CEBPZOSA8MTT3 80 aa12.4□□□□□ -0.43
GPC3-202ENST00000394299 FAM90A26D6RGX4 464 aa12.4□□□□□ -0.43
GPC3-202ENST00000394299 PPIAL4DF5H284 164 aa12.4□□□□□ -0.43
GPC3-202ENST00000394299 PPIAL4FP0DN26 164 aa12.4□□□□□ -0.43
GPC3-202ENST00000394299 LY6DQ14210 128 aa12.4□□□□□ -0.43
GPC3-202ENST00000394299 AKR1C8PQ5T2L2 129 aa12.4□□□□□ -0.43
GPC3-202ENST00000394299 SFT2D1Q8WV19 159 aa12.4□□□□□ -0.43
GPC3-202ENST00000394299 S1PR3Q99500 378 aa12.4□□□□□ -0.43
GPC3-202ENST00000394299 TMEM106BQ9NUM4 274 aa12.4□□□□□ -0.43
GPC3-202ENST00000394299 PPIAL4AQ9Y536 164 aa12.4□□□□□ -0.43
GPC3-202ENST00000394299 TANC2Q9HCD6 1990 aa12.39□□□□□ -0.43
GPC3-202ENST00000394299 UBE2L5PA0A1B0GUS4 154 aa12.39□□□□□ -0.43
GPC3-202ENST00000394299 HPRT1P00492 218 aa12.39□□□□□ -0.43
GPC3-202ENST00000394299 H2AFB1P0C5Y9 115 aa12.39□□□□□ -0.43
GPC3-202ENST00000394299 CASP6P55212 293 aa12.39□□□□□ -0.43
GPC3-202ENST00000394299 SLC38A11Q08AI6 406 aa12.39□□□□□ -0.43
GPC3-202ENST00000394299 ZNF439Q8NDP4 499 aa12.39□□□□□ -0.43
GPC3-202ENST00000394299 SCGB1C1Q8TD33 95 aa12.39□□□□□ -0.43
GPC3-202ENST00000394299 EGLN1Q9GZT9 426 aa12.39□□□□□ -0.43
GPC3-202ENST00000394299 TRAV38-1A0A0B4J264 116 aa12.38□□□□□ -0.43
GPC3-202ENST00000394299 IFNA17P01571 189 aa12.38□□□□□ -0.43
GPC3-202ENST00000394299 AKR1C3P42330 323 aa12.38□□□□□ -0.43
GPC3-202ENST00000394299 RPL31P62899 125 aaKnown RBP12.38□□□□□ -0.43
GPC3-202ENST00000394299 MRPS11P82912 194 aaKnown RBP12.38□□□□□ -0.43
GPC3-202ENST00000394299 ADORA2A-AS1P86434 159 aa12.38□□□□□ -0.43
GPC3-202ENST00000394299 SSX7Q7RTT5 188 aa12.38□□□□□ -0.43
GPC3-202ENST00000394299 TCTEX1D1Q8N7M0 179 aa12.38□□□□□ -0.43
GPC3-202ENST00000394299 ZNF383Q8NA42 475 aa12.38□□□□□ -0.43
GPC3-202ENST00000394299 DDB2Q92466 427 aa12.38□□□□□ -0.43
GPC3-202ENST00000394299 H1FXQ92522 213 aaKnown RBP12.38□□□□□ -0.43
GPC3-202ENST00000394299 DIRC2Q96SL1 478 aa12.38□□□□□ -0.43
GPC3-202ENST00000394299 NGBQ9NPG2 151 aa12.38□□□□□ -0.43
GPC3-202ENST00000394299 RPRMQ9NS64 109 aa12.38□□□□□ -0.43
GPC3-202ENST00000394299 ITPR1Q14643 2758 aa12.38□□□□□ -0.43
GPC3-202ENST00000394299 ANKHD1Q8IWZ3 2542 aaKnown RBP12.38□□□□□ -0.43
GPC3-202ENST00000394299 PMS2P5A8MQ11 134 aa12.38□□□□□ -0.43
GPC3-202ENST00000394299 UMAD1C9J7I0 102 aa12.38□□□□□ -0.43
GPC3-202ENST00000394299 CD3EP07766 207 aa12.38□□□□□ -0.43
GPC3-202ENST00000394299 FBP1P09467 338 aa12.38□□□□□ -0.43
GPC3-202ENST00000394299 OR13C7P0DN81 318 aa12.38□□□□□ -0.43
GPC3-202ENST00000394299 MYOD1P15172 320 aa12.38□□□□□ -0.43
GPC3-202ENST00000394299 HAGHQ16775 308 aa12.38□□□□□ -0.43
GPC3-202ENST00000394299 LRRC75BQ2VPJ9 315 aa12.38□□□□□ -0.43
GPC3-202ENST00000394299 NCOR1P1Q9H4R4 102 aa12.38□□□□□ -0.43
GPC3-202ENST00000394299 CISD1Q9NZ45 108 aaKnown RBP12.38□□□□□ -0.43
GPC3-202ENST00000394299 CTSZQ9UBR2 303 aa12.38□□□□□ -0.43
GPC3-202ENST00000394299 RALYQ9UKM9 306 aaKnown RBP12.38□□□□□ -0.43
GPC3-202ENST00000394299 ZNF729A6NN14 1252 aaPredicted RBP12.37□□□□□ -0.43
GPC3-202ENST00000394299 HBG1P69891 147 aa12.37□□□□□ -0.43
GPC3-202ENST00000394299 HBG2P69892 147 aa12.37□□□□□ -0.43
GPC3-202ENST00000394299 TMEM200BQ69YZ2 307 aa12.37□□□□□ -0.43
GPC3-202ENST00000394299 CD300LFQ8TDQ1 290 aa12.37□□□□□ -0.43
GPC3-202ENST00000394299 ZCCHC14Q8WYQ9 949 aaKnown RBP12.37□□□□□ -0.43
GPC3-202ENST00000394299 WDR61Q9GZS3 305 aaKnown RBP12.37□□□□□ -0.43
GPC3-202ENST00000394299 VSTM5A8MXK1 200 aa12.37□□□□□ -0.43
GPC3-202ENST00000394299 APOBEC3AP31941 199 aaPredicted RBP12.37□□□□□ -0.43
GPC3-202ENST00000394299 ELLP55199 621 aaPredicted RBP12.37□□□□□ -0.43
GPC3-202ENST00000394299 CORO2AQ92828 525 aa12.37□□□□□ -0.43
GPC3-202ENST00000394299 RPUSD1Q9UJJ7 312 aaKnown RBP12.37□□□□□ -0.43
GPC3-202ENST00000394299 PRELID3BQ9Y3B1 194 aa12.37□□□□□ -0.43
GPC3-202ENST00000394299 hADV38S2A0JD32 116 aa12.36□□□□□ -0.43
GPC3-202ENST00000394299 NKX6-3A6NJ46 265 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms